Rroxscaffold_1G00058650

Protein ROOT HAIR DEFECTIVE 3 homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
80532151 .. 80539021
6871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058650.1

Sequence Viewer

Length: 2496 bp
ATGGCGGCGGAGGATTGCTACGCCACGCAGCTGATCGACGGCGACGGCGAATTCAATGCCGCCGGGCTGGACCGATTCGTGAAGGAAGCGAAGGTTATCGATTGCGGGCTCTCGTACGCCGTAGTCGCCATTATGGGGCCGCAGAGTAGCGGGAAGAGTACTTTGATGAATCATCTGTTTCATACTAAGTTCAGGGAGATGGATGCGTTTAGGGGAAGGAGCCAAACGACGAAGGGGATTTGGATTGCCAAGTGTGTTGGCATTGAGCCTTGCACTATAGGCATGGATTTGGAGGGTACTGATGGCAGGGAGAGAGGCGAGGATGATACTACATTTGAGAAACAAAGCGCTCTTTTTGCGTTGGCAGTTTCAGACATTGTGCTGATTAACATGTGGTGCCATGATATTGGTCGGGAGCAGGCTGCAAACAAACCTTTACTGAAAACAGTTTTTCAGGTGATGATGCGCTTATTTAGCCCACGTAAAACGACGTTGTTGTTTGTTATACGCGATAAAACAAAGACCCCATTTGAGTATCTGGAACCTGTTTTAAGGGAAGATATACAAAAGATATGGGATTCAGTTCCAAAGCCCCAAGCCCACAAAAGCACCCCGCTCAGCGAATTTTTCACTGTAGAAGTAGTTGCTTTGTCCAGTTATGAAGAGAAGGAGGAGAAGTTTAAGGAGGAGGTTGCTGAACTGCGGCAGCGTTTTTTCCATTCTATTTCTCCAGGAGGGCTTGCTGGTGATAGACGGGGTGTTGTCCCTGCCTCCGGATTTTCATTTAGCGCACAACGGATTTGGAAAATAATCAAAGAAAACAAAGACCTGGATCTTCCTGCTCACAAGGTTATGGTTGCTACTGTTCGGTGTGAAGAGATTGCTAATGAGAAATTCAATCACTTGACGTTTAATGAGGATTGGTTGGCATTGGAAGAAGCTGTGCAAAGTGGTCCAGTACCAGGTTTTGGTAAACAGCTCAGCTCCATCCTAGACACCTATCTTTCTGAATATGACATGGAGGCCATATACTTTGATGAAGGTGTAAGGAACTCAAGACGACACCAATTGGAAAAAAGAGCATTGGACTTTGTGTTCCCTGCATACACTACCATGCTTGGGCACCTACGTTCTAATGCATTGGAAAATTTTAAAGTGAGATTGGAGCAGTCATTGAACAATGGAGAAAGTTTTGCCTCATCTGTTCGAACCTGTCTGGAGGGATGCATGCTTGAGTTTGACCGTGGATGTGCAGATGCTGCTGTACAGCAGGTTAATTGGGATACTTCAAGAGTTCGGGAAAAGCTCCGACGTGATATAGATGCACATGCATCATCTATTCGTAGTACAAAGTTGTCGGAATTGAATACCAGTTATGAGAAAAAACTCTCAGCTTCTTTAACTGAACCTGTGGGGGCTCTACTTGATGCCGGAGGAGAAGACACCTGGGCTTCAATAAGGAAACTTCTTAATCATGAGACTGAATCTGTAGTATTAGAGTTCTCAAAAGCAGTTGTTGGTTTTGAGTTGGATAAAGTAACAATTGCGAAAATGGTGCAAAATTTAAGGGATTATGCAAGAAATGTAGTGGAGATAAAAGCAAGAGAAGAGGCTGGCAAAGTTCTGATCCACATGAAGGATCGGTTTTCAACAGTCTTCAATTATGACAGTGATTCAATGCCTAGGATATGGACCGGGAAGGAAGACATTAAAACCATAACCAAGGATGCCCGCTCTGCGTCTCTCAAGATTTTATCGGTTAGAGCTGCTATTCGCTTGGATGAGAAGCCTGATAATATTGAAAAAGTGATCTTTTCTTCTCTAATGGATGGAACTGGTACTGCTTTGTCCTCACAAGATACGAGAACAAGAGCTTTAGCAGATCCTCTTGCAACAAGCACTTGGGAGGAGGTTTCTCCAAAGGATACACTGATTACACCAGTGCAATGCAAATCACTGTGGAGACAGTTCAAATCAGAAACTGAGTATACTATCACTCAAGCTATTTCAGCACAGGAGGCTCACAAGCGTAGTAACAACTGGTTGCCTCCTCCATGGGCCATTATGGCAATGATTCTTCTTGGTTTCAATGAATTTATGCTCCTTTTAAGGAACCCTCTCTACCTCTTGGTTCTTTTTGTTGCATATTTACTTACGAAGGCCTTATGGGTACAGATGGACATTGCGGGAGAGTTCCGACATGGCGCTCTTTCAGGAATATTATCCATTTCATCGAAGTTTCTTCCCACTGTTATGGATATCCTGAGACGGCTTGCAGAAGAAGCTCAAGGGCGTCCAACACCTGAAGCGCCAAGACAGCCAGTTTCTCTTGCTTCTCAAAGTTATAGAAGTGAAACACCTCAGCCAAATCCAGTGACGAGCTCAGTTCCTGAGTCATCCGTATCATCTAATATTTCATCTTCTGATAGTGGCATGGAATACTCGAGCCCTAACTTGACACACAGGCGAACCACAAACATTCAGGAGATGGAATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

831

Amino Acids

93.4

Weight (kDa)

5.79

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RHD3_GTPase PF05879 45 - 280 1.8e-113 Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
Sey1_3HB PF20428 322 - 761 6.6e-138 Sey1 three-helix bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1261
AccB1I GGYRCC 2 cut(s) 396, 1122
AccB7I CCANNNNNTGG 1 cut(s) 968
AccBSI CCGCTC 2 cut(s) 616, 1734
AccI GTMKAC 1 cut(s) 1988
AccII CGCG 1 cut(s) 510
AccIII TCCGGA 1 cut(s) 773
AclWI GGATC 4 cut(s) 840, 1621, 1647, 1877
AcsI RAATTY 6 cut(s) 50, 623, 893, 1147, 1561, 2093
AcuI CTGAAG 1 cut(s) 2325
AcyI GRCGYC 1 cut(s) 2293
AfaI GTAC 8 cut(s) 116, 160, 298, 960, 1266, 1348, 1840, 2172
AfeI AGCGCT 1 cut(s) 349
AfiI CCNNNNNNNGG 6 cut(s) 135, 773, 962, 968, 1119, 1636
AflIII ACRYGT 1 cut(s) 390
AjiI CACGTC 1 cut(s) 1313
AjnI CCWGG 4 cut(s) 730, 828, 961, 1445
AloI GAACNNNNNNTCC 2 cut(s) 1079, 1111
Alw21I GWGCWC 1 cut(s) 2384
Alw26I GTCTC 4 cut(s) 1472, 1746, 1957, 2260
AlwI GGATC 4 cut(s) 840, 1621, 1647, 1877
AlwNI CAGNNNCTG 3 cut(s) 1259, 1982, 2390
Ama87I CYCGRG 1 cut(s) 2443
Aor13HI TCCGGA 1 cut(s) 773
Aor51HI AGCGCT 1 cut(s) 349
AoxI GGCC 4 cut(s) 137, 1023, 2058, 2160
ApeKI GCWGC 5 cut(s) 28, 422, 706, 1259, 1766
ApoI RAATTY 6 cut(s) 50, 623, 893, 1147, 1561, 2093
AspA2I CCTAGG 1 cut(s) 1682
AspLEI GCGC 5 cut(s) 350, 468, 791, 2207, 2311
AspS9I GGNCC 5 cut(s) 70, 137, 953, 1692, 2058
AsuC2I CCSGG 2 cut(s) 64, 1696
AsuHPI GGTGA 2 cut(s) 469, 758
AsuII TTCGAA 1 cut(s) 1207
AvaI CYCGRG 1 cut(s) 2443
AvaII GGWCC 3 cut(s) 70, 953, 1692
AvrII CCTAGG 1 cut(s) 1682
BaeGI GKGCMC 1 cut(s) 1125
BanI GGYRCC 2 cut(s) 396, 1122
BanII GRGCYC 4 cut(s) 111, 1420, 2384, 2450
BbsI GAAGAC 3 cut(s) 1446, 1648, 1710
Bbv12I GWGCWC 1 cut(s) 2384
BbvCI CCTCAGC 1 cut(s) 2361
BbvI GCAGC 5 cut(s) 40, 409, 718, 1246, 1753
BccI CCATC 6 cut(s) 193, 296, 995, 1823, 2170, 2482
BceAI ACGGC 4 cut(s) 55, 61, 104, 2285
BcgI CGANNNNNNTGC 4 cut(s) 38, 72, 1537, 1571
BciT130I CCWGG 4 cut(s) 732, 830, 963, 1447
BciVI GTATCC 2 cut(s) 1276, 1918
BcnI CCSGG 2 cut(s) 64, 1696
BcoDI GTCTC 4 cut(s) 1472, 1746, 1957, 2260
BfaI CTAG 2 cut(s) 992, 1683
BfmI CTRYAG 3 cut(s) 276, 633, 1488
BfoI RGCGCY 3 cut(s) 351, 2208, 2312
BfuAI ACCTGC 1 cut(s) 1261
BfuI GTATCC 2 cut(s) 1276, 1918
BglI GCCNNNNNGGC 1 cut(s) 2066
BisI GCNGC 9 cut(s) 6, 29, 60, 140, 423, 704, 707, 1260, 1767
BlnI CCTAGG 1 cut(s) 1682
BlpI GCTNAGC 2 cut(s) 617, 980
BlsI GCNGC 9 cut(s) 7, 30, 61, 141, 424, 705, 708, 1261, 1768
BmcAI AGTACT 1 cut(s) 160
Bme1390I CCNGG 6 cut(s) 64, 732, 830, 963, 1447, 1696
Bme18I GGWCC 3 cut(s) 70, 953, 1692
BmeT110I CYCGRG 1 cut(s) 2443
BmgBI CACGTC 1 cut(s) 1313
BmgT120I GGNCC 5 cut(s) 70, 137, 953, 1692, 2058
BmiI GGNNCC 6 cut(s) 138, 221, 398, 543, 1124, 2114
BmrFI CCNGG 6 cut(s) 64, 732, 830, 963, 1447, 1696
BmsI GCATC 8 cut(s) 193, 453, 1214, 1246, 1312, 1340, 1417, 1717
BpiI GAAGAC 3 cut(s) 1446, 1648, 1710
BpmI CTGGAG 2 cut(s) 714, 1238
Bpu10I CCTNAGC 1 cut(s) 2361
Bpu1102I GCTNAGC 2 cut(s) 617, 980
Bpu14I TTCGAA 1 cut(s) 1207
BpuEI CTTGAG 5 cut(s) 1039, 1253, 1730, 1983, 2271
BpuMI CCSGG 2 cut(s) 64, 1696
Bsa29I ATCGAT 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 2293
BsaJI CCNNGG 5 cut(s) 1243, 1446, 1682, 1722, 2054
BsaWI WCCGGW 1 cut(s) 773
BsaXI ACNNNNNCTCC 2 cut(s) 662, 692
Bsc4I CCNNNNNNNGG 6 cut(s) 135, 773, 962, 968, 1119, 1636
Bse1I ACTGG 8 cut(s) 654, 956, 1371, 1840, 1940, 2045, 2321, 2372
Bse3DI GCAATG 3 cut(s) 1952, 2076, 2181
BseAI TCCGGA 1 cut(s) 773
BseBI CCWGG 4 cut(s) 732, 830, 963, 1447
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 5 cut(s) 1243, 1446, 1682, 1722, 2054
BseGI GGATG 9 cut(s) 208, 328, 987, 1229, 1253, 1732, 1786, 1834, 2396
BseLI CCNNNNNNNGG 6 cut(s) 135, 773, 962, 968, 1119, 1636
BseMI GCAATG 3 cut(s) 1952, 2076, 2181
BseMII CTCAG 8 cut(s) 631, 994, 1404, 1974, 2255, 2375, 2382, 2397
BseNI ACTGG 8 cut(s) 654, 956, 1371, 1840, 1940, 2045, 2321, 2372
BseRI GAGGAG 5 cut(s) 686, 701, 1449, 1922, 2040
BseSI GKGCMC 1 cut(s) 1125
BseXI GCAGC 5 cut(s) 40, 409, 718, 1246, 1753
BsgI GTGCAG 1 cut(s) 1272
Bsh1236I CGCG 1 cut(s) 510
BshFI GGCC 4 cut(s) 139, 1025, 2060, 2162
BshNI GGYRCC 2 cut(s) 396, 1122
BshVI ATCGAT 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 2384
BsiHKCI CYCGRG 1 cut(s) 2443
BsiSI CCGG 4 cut(s) 63, 774, 1431, 1695
BsiWI CGTACG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 749
BslI CCNNNNNNNGG 6 cut(s) 135, 773, 962, 968, 1119, 1636
BsmAI GTCTC 4 cut(s) 1472, 1746, 1957, 2260
BsmBI CGTCTC 2 cut(s) 1746, 2260
BsmFI GGGAC 1 cut(s) 749
BsnI GGCC 4 cut(s) 139, 1025, 2060, 2162
BsoBI CYCGRG 1 cut(s) 2443
Bsp119I TTCGAA 1 cut(s) 1207
Bsp1286I GDGCHC 5 cut(s) 111, 1125, 1420, 2384, 2450
Bsp13I TCCGGA 1 cut(s) 773
Bsp1407I TGTACA 1 cut(s) 1264
Bsp143I GATC 6 cut(s) 33, 832, 1626, 1639, 1809, 1882
Bsp1720I GCTNAGC 2 cut(s) 617, 980
Bsp19I CCATGG 1 cut(s) 2054
BspANI GGCC 4 cut(s) 139, 1025, 2060, 2162
BspCNI CTCAG 8 cut(s) 630, 993, 1403, 1975, 2256, 2374, 2383, 2396
BspDI ATCGAT 1 cut(s) 99
BspEI TCCGGA 1 cut(s) 773
BspFNI CGCG 1 cut(s) 510
BspHI TCATGA 1 cut(s) 1474
BspLI GGNNCC 6 cut(s) 138, 221, 398, 543, 1124, 2114
BspMI ACCTGC 1 cut(s) 1261
BspPI GGATC 4 cut(s) 840, 1621, 1647, 1877
BspT104I TTCGAA 1 cut(s) 1207
BspT107I GGYRCC 2 cut(s) 396, 1122
BsrBI CCGCTC 2 cut(s) 616, 1734
BsrDI GCAATG 3 cut(s) 1952, 2076, 2181
BsrGI TGTACA 1 cut(s) 1264
BsrI ACTGG 8 cut(s) 654, 956, 1371, 1840, 1940, 2045, 2321, 2372
BssECI CCNNGG 5 cut(s) 1243, 1446, 1682, 1722, 2054
BssMI GATC 6 cut(s) 33, 832, 1626, 1639, 1809, 1882
BssNAI GTATAC 1 cut(s) 1989
BssNI GRCGYC 1 cut(s) 2293
BssT1I CCWWGG 3 cut(s) 1682, 1722, 2054
Bst1107I GTATAC 1 cut(s) 1989
Bst2UI CCWGG 4 cut(s) 732, 830, 963, 1447
Bst4CI ACNGT 9 cut(s) 448, 634, 865, 1244, 1654, 1670, 1959, 1968, 2251
Bst6I CTCTTC 4 cut(s) 149, 657, 870, 1602
BstACI GRCGYC 1 cut(s) 2293
BstAPI GCANNNNNTGC 1 cut(s) 1259
BstAUI TGTACA 1 cut(s) 1264
BstBAI YACGTR 1 cut(s) 482
BstBI TTCGAA 1 cut(s) 1207
BstC8I GCNNGC 7 cut(s) 107, 420, 741, 1229, 1615, 1732, 2274
BstDEI CTNAG 9 cut(s) 186, 617, 980, 1390, 1983, 2264, 2361, 2383, 2391
BstDSI CCRYGG 2 cut(s) 1243, 2054
BstF5I GGATG 9 cut(s) 208, 328, 987, 1229, 1253, 1732, 1786, 1834, 2396
BstFNI CGCG 1 cut(s) 510
BstH2I RGCGCY 3 cut(s) 351, 2208, 2312
BstHHI GCGC 5 cut(s) 350, 468, 791, 2207, 2311
BstKTI GATC 6 cut(s) 36, 835, 1629, 1642, 1812, 1885
BstMAI GTCTC 4 cut(s) 1472, 1746, 1957, 2260
BstMBI GATC 6 cut(s) 33, 832, 1626, 1639, 1809, 1882
BstNI CCWGG 4 cut(s) 732, 830, 963, 1447
BstNSI RCATGY 3 cut(s) 394, 1231, 1331
BstSCI CCNGG 6 cut(s) 62, 730, 828, 961, 1445, 1694
BstSFI CTRYAG 3 cut(s) 276, 633, 1488
BstSLI GKGCMC 1 cut(s) 1125
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 5 cut(s) 40, 409, 718, 1246, 1753
BstV2I GAAGAC 3 cut(s) 1446, 1648, 1710
BstX2I RGATCY 2 cut(s) 832, 1882
BstXI CCANNNNNNTGG 2 cut(s) 407, 2254
BstYI RGATCY 2 cut(s) 832, 1882
BstZ17I GTATAC 1 cut(s) 1989
Bsu15I ATCGAT 1 cut(s) 99
BsuI GTATCC 2 cut(s) 1276, 1918
BsuRI GGCC 4 cut(s) 139, 1025, 2060, 2162
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 2 cut(s) 1243, 2054
BtrI CACGTC 1 cut(s) 1313
BtsCI GGATG 9 cut(s) 208, 328, 987, 1229, 1253, 1732, 1786, 1834, 2396
BtsIMutI CAGTG 7 cut(s) 630, 1675, 1928, 1947, 1955, 2247, 2379
BveI ACCTGC 1 cut(s) 1261
Cac8I GCNNGC 7 cut(s) 107, 420, 741, 1229, 1615, 1732, 2274
CaiI CAGNNNCTG 3 cut(s) 1259, 1982, 2390
CciI TCATGA 1 cut(s) 1474
CfoI GCGC 5 cut(s) 350, 468, 791, 2207, 2311
Cfr13I GGNCC 5 cut(s) 70, 137, 953, 1692, 2058
ClaI ATCGAT 1 cut(s) 99
CseI GACGC 2 cut(s) 1728, 2282
CsiI ACCWGGT 1 cut(s) 961
Csp6I GTAC 8 cut(s) 115, 159, 297, 959, 1265, 1347, 1839, 2171
CviQI GTAC 8 cut(s) 115, 159, 297, 959, 1265, 1347, 1839, 2171
DdeI CTNAG 9 cut(s) 186, 617, 980, 1390, 1983, 2264, 2361, 2383, 2391
DpnI GATC 6 cut(s) 35, 834, 1628, 1641, 1811, 1884
DpnII GATC 6 cut(s) 33, 832, 1626, 1639, 1809, 1882
DraI TTTAAA 1 cut(s) 1153
Eam1104I CTCTTC 4 cut(s) 149, 657, 870, 1602
EarI CTCTTC 4 cut(s) 149, 657, 870, 1602
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 2382
Eco130I CCWWGG 3 cut(s) 1682, 1722, 2054
Eco147I AGGCCT 1 cut(s) 2162
Eco24I GRGCYC 4 cut(s) 111, 1420, 2384, 2450
Eco32I GATATC 1 cut(s) 2260
Eco47I GGWCC 3 cut(s) 70, 953, 1692
Eco47III AGCGCT 1 cut(s) 349
Eco53kI GAGCTC 1 cut(s) 2382
Eco57I CTGAAG 1 cut(s) 2325
Eco88I CYCGRG 1 cut(s) 2443
EcoICRI GAGCTC 1 cut(s) 2382
EcoRI GAATTC 1 cut(s) 50
EcoRII CCWGG 4 cut(s) 730, 828, 961, 1445
EcoRV GATATC 1 cut(s) 2260
EcoT14I CCWWGG 3 cut(s) 1682, 1722, 2054
EcoT22I ATGCAT 3 cut(s) 1141, 1229, 1333
EcoT38I GRGCYC 4 cut(s) 111, 1420, 2384, 2450
ErhI CCWWGG 3 cut(s) 1682, 1722, 2054
Esp3I CGTCTC 2 cut(s) 1746, 2260
FaqI GGGAC 1 cut(s) 749
FauI CCCGC 5 cut(s) 98, 143, 621, 1739, 2179
FblI GTMKAC 1 cut(s) 1988
Fnu4HI GCNGC 9 cut(s) 6, 29, 60, 140, 423, 704, 707, 1260, 1767
FokI GGATG 9 cut(s) 215, 335, 974, 1236, 1260, 1739, 1793, 1841, 2383
FriOI GRGCYC 4 cut(s) 111, 1420, 2384, 2450
Fsp4HI GCNGC 9 cut(s) 6, 29, 60, 140, 423, 704, 707, 1260, 1767
FspBI CTAG 2 cut(s) 992, 1683
GlaI GCGC 5 cut(s) 349, 467, 790, 2206, 2310
GluI GCNGC 9 cut(s) 6, 29, 60, 140, 423, 704, 707, 1260, 1767
GsuI CTGGAG 2 cut(s) 714, 1238
HaeII RGCGCY 3 cut(s) 351, 2208, 2312
HaeIII GGCC 4 cut(s) 139, 1025, 2060, 2162
HapII CCGG 4 cut(s) 63, 774, 1431, 1695
HgaI GACGC 2 cut(s) 1728, 2282
HhaI GCGC 5 cut(s) 350, 468, 791, 2207, 2311
Hin1I GRCGYC 1 cut(s) 2293
Hin6I GCGC 5 cut(s) 348, 466, 789, 2205, 2309
HinP1I GCGC 5 cut(s) 348, 466, 789, 2205, 2309
HinfI GANTC 7 cut(s) 75, 169, 578, 1484, 1673, 2074, 2393
HpaII CCGG 4 cut(s) 63, 774, 1431, 1695
HphI GGTGA 2 cut(s) 469, 758
Hpy166II GTNNAC 2 cut(s) 974, 1989
Hpy188I TCNGA 8 cut(s) 373, 1009, 1310, 1360, 1626, 1978, 2198, 2425
Hpy8I GTNNAC 2 cut(s) 974, 1989
Hpy99I CGWCG 5 cut(s) 41, 47, 232, 493, 1314
HpyAV CCTTC 9 cut(s) 76, 85, 210, 226, 661, 1034, 1630, 1693, 2152
HpyCH4III ACNGT 9 cut(s) 448, 634, 865, 1244, 1654, 1670, 1959, 1968, 2251
HpyCH4IV ACGT 5 cut(s) 481, 491, 908, 1129, 1312
HpyF3I CTNAG 9 cut(s) 186, 617, 980, 1390, 1983, 2264, 2361, 2383, 2391
HpySE526I ACGT 5 cut(s) 481, 491, 908, 1129, 1312
Hsp92I GRCGYC 1 cut(s) 2293
HspAI GCGC 5 cut(s) 348, 466, 789, 2205, 2309
Kpn2I TCCGGA 1 cut(s) 773
Kzo9I GATC 6 cut(s) 33, 832, 1626, 1639, 1809, 1882
LmnI GCTCC 6 cut(s) 219, 415, 989, 1165, 1311, 2106
Lsp1109I GCAGC 5 cut(s) 40, 409, 718, 1246, 1753
LweI GCATC 8 cut(s) 193, 453, 1214, 1246, 1312, 1340, 1417, 1717
MabI ACCWGGT 1 cut(s) 961
MaeI CTAG 2 cut(s) 992, 1683
MaeII ACGT 5 cut(s) 481, 491, 908, 1129, 1312
MaeIII GTNAC 3 cut(s) 1537, 2033, 2374
MalI GATC 6 cut(s) 35, 834, 1628, 1641, 1811, 1884
MbiI CCGCTC 2 cut(s) 616, 1734
MboI GATC 6 cut(s) 33, 832, 1626, 1639, 1809, 1882
MfeI CAATTG 2 cut(s) 1067, 1542
MflI RGATCY 2 cut(s) 832, 1882
MhlI GDGCHC 5 cut(s) 111, 1125, 1420, 2384, 2450
MlyI GAGTC 1 cut(s) 2402
MmeI TCCRAC 5 cut(s) 1333, 1338, 1509, 2221, 2321
Mph1103I ATGCAT 3 cut(s) 1141, 1229, 1333
MroI TCCGGA 1 cut(s) 773
MslI CAYNNNNRTG 2 cut(s) 1112, 2252
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 4 cut(s) 63, 774, 1431, 1695
MspR9I CCNGG 6 cut(s) 64, 732, 830, 963, 1447, 1696
MunI CAATTG 2 cut(s) 1067, 1542
MvaI CCWGG 4 cut(s) 732, 830, 963, 1447
MvnI CGCG 1 cut(s) 510
NciI CCSGG 2 cut(s) 64, 1696
NcoI CCATGG 1 cut(s) 2054
NdeII GATC 6 cut(s) 33, 832, 1626, 1639, 1809, 1882
NlaIV GGNNCC 6 cut(s) 138, 221, 398, 543, 1124, 2114
NmuCI GTSAC 1 cut(s) 2374
NsiI ATGCAT 3 cut(s) 1141, 1229, 1333
NspI RCATGY 3 cut(s) 394, 1231, 1331
NspV TTCGAA 1 cut(s) 1207
PaeI GCATGC 1 cut(s) 1231
PaeR7I CTCGAG 1 cut(s) 2443
PagI TCATGA 1 cut(s) 1474
PceI AGGCCT 1 cut(s) 2162
PciI ACATGT 1 cut(s) 390
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 6 cut(s) 75, 169, 578, 1484, 1673, 2074
Pfl23II CGTACG 1 cut(s) 114
PflMI CCANNNNNTGG 1 cut(s) 968
PfoI TCCNGGA 1 cut(s) 730
PkrI GCNGC 9 cut(s) 7, 30, 61, 141, 424, 705, 708, 1261, 1768
PleI GAGTC 1 cut(s) 2401
PpsI GAGTC 1 cut(s) 2401
Ppu21I YACGTR 1 cut(s) 482
PscI ACATGT 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 2384
Psp6I CCWGG 4 cut(s) 730, 828, 961, 1445
PspGI CCWGG 4 cut(s) 730, 828, 961, 1445
PspLI CGTACG 1 cut(s) 114
PspN4I GGNNCC 6 cut(s) 138, 221, 398, 543, 1124, 2114
PspPI GGNCC 5 cut(s) 70, 137, 953, 1692, 2058
PspXI VCTCGAGB 1 cut(s) 2443
PsrI GAACNNNNNNTAC 2 cut(s) 2105, 2137
PstNI CAGNNNCTG 3 cut(s) 1259, 1982, 2390
PsuI RGATCY 2 cut(s) 832, 1882
PvuII CAGCTG 1 cut(s) 31
RsaI GTAC 8 cut(s) 116, 160, 298, 960, 1266, 1348, 1840, 2172
RsaNI GTAC 8 cut(s) 115, 159, 297, 959, 1265, 1347, 1839, 2171
RseI CAYNNNNRTG 2 cut(s) 1112, 2252
SacI GAGCTC 1 cut(s) 2384
SatI GCNGC 9 cut(s) 6, 29, 60, 140, 423, 704, 707, 1260, 1767
Sau3AI GATC 6 cut(s) 33, 832, 1626, 1639, 1809, 1882
Sau96I GGNCC 5 cut(s) 70, 137, 953, 1692, 2058
ScaI AGTACT 1 cut(s) 160
SchI GAGTC 1 cut(s) 2402
ScrFI CCNGG 6 cut(s) 64, 732, 830, 963, 1447, 1696
SduI GDGCHC 5 cut(s) 111, 1125, 1420, 2384, 2450
SexAI ACCWGGT 1 cut(s) 961
SfaNI GCATC 8 cut(s) 193, 453, 1214, 1246, 1312, 1340, 1417, 1717
SfcI CTRYAG 3 cut(s) 276, 633, 1488
Sfr274I CTCGAG 1 cut(s) 2443
SfuI TTCGAA 1 cut(s) 1207
SinI GGWCC 3 cut(s) 70, 953, 1692
SlaI CTCGAG 1 cut(s) 2443
SmiMI CAYNNNNRTG 2 cut(s) 1112, 2252
SmlI CTYRAG 6 cut(s) 1054, 1232, 1745, 1998, 2286, 2443
SmoI CTYRAG 6 cut(s) 1054, 1232, 1745, 1998, 2286, 2443
SphI GCATGC 1 cut(s) 1231
SseBI AGGCCT 1 cut(s) 2162
SspI AATATT 3 cut(s) 1798, 2220, 2413
SspMI CTAG 2 cut(s) 992, 1683
SstI GAGCTC 1 cut(s) 2384
StuI AGGCCT 1 cut(s) 2162
StyD4I CCNGG 6 cut(s) 62, 730, 828, 961, 1445, 1694
StyI CCWWGG 3 cut(s) 1682, 1722, 2054
TaaI ACNGT 9 cut(s) 448, 634, 865, 1244, 1654, 1670, 1959, 1968, 2251
TaiI ACGT 5 cut(s) 484, 494, 911, 1132, 1315
TaqI TCGA 5 cut(s) 36, 99, 1207, 2234, 2444
TaqII GACCGA 1 cut(s) 87
TatI WGTACW 3 cut(s) 158, 1264, 1346
TauI GCSGC 4 cut(s) 8, 62, 142, 706
TfiI GAWTC 6 cut(s) 75, 169, 578, 1484, 1673, 2074
TscAI CASTG 7 cut(s) 637, 1675, 1935, 1947, 1962, 2254, 2379
TseFI GTSAC 1 cut(s) 2374
TseI GCWGC 5 cut(s) 28, 422, 706, 1259, 1766
Tsp45I GTSAC 1 cut(s) 2374
TspDTI ATGAA 9 cut(s) 170, 182, 675, 771, 1053, 1649, 2106, 2220, 2406
TspGWI ACGGA 2 cut(s) 811, 2389
TspRI CASTG 7 cut(s) 637, 1675, 1935, 1947, 1962, 2254, 2379
Van91I CCANNNNNTGG 1 cut(s) 968
VpaK11BI GGWCC 3 cut(s) 70, 953, 1692
XapI RAATTY 6 cut(s) 50, 623, 893, 1147, 1561, 2093
XceI RCATGY 3 cut(s) 394, 1231, 1331
XhoI CTCGAG 1 cut(s) 2443
XmaJI CCTAGG 1 cut(s) 1682
XmiI GTMKAC 1 cut(s) 1988
XspI CTAG 2 cut(s) 992, 1683
ZrmI AGTACT 1 cut(s) 160
Zsp2I ATGCAT 3 cut(s) 1141, 1229, 1333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.