MD10G1237400.v1.1

Protein ROOT HAIR DEFECTIVE 3 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
33362205 .. 33368491
6287 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1237400.v1.1.491

Sequence Viewer

Length: 2496 bp
ATGGAGGAAGATTGCTGCGCCAGGCAACTAATCTATGGGGACGGAGAATTCAACGCAGATGGGCTCGATAGGTTCGTGAAGGAAGTCAAGCTTGCTGAGTGTGGACTCTCTTATGCGGTTGTTGCAATCATGGGTCCGCAGAGCAGCGGGAAAAGCACTTTGTTGAATCATCTGTTTCGGACTAAGTTCAGGGAGATGGATGCTTACAGTGGAAGGAGCCAAACAACAAAGGGTATTTGGATTGCCAAGTGTGTTGGCATCGAGCCGTGCACGATTGCCATGGATTTGGAGGGGACTGATGGGAGGGAGAGAGGCGAGGATGATACTACATTCGAGAAGCAAAGCGCCCTATTTGCTTTGGCAGTTTCAGACATTGTGCTGATAAATATGTGGTGTCATGATATTGGTCGGGAGCAAGCTGCTAATAAACCTTTACTGAAAACAGTTTTTCAGGTCATGATGCGCCTATTCAGCCCCCGTAAAACGAAGTTACTTTTTGTTATACGTGATAAAACAAAGACCCCTTTTGAATATCTGGAACCTGTGCTAAGGGAAGATATACAGAAGATATGGGATGGAGTACCGAAGCCCCAAGCCCATAAAAGTACCCCCTTGAGTGAATTTTTTACTGTAGAAGTAGTTGCTTTGTCCAGTTATGAAGAGAAGGAGGAGAAGTTTAACGAGGAGGTTGCTCAACTGAGGCAGCTCTTTTTCCATTCTATTTCTCCAGGAGGGCTTGCTGGTGATAGACGTGGTGTTGTCCCCGCGTCAGGATTTTCCTTTAGTGCACAACAGATTTGGAAAGTAATCAAACAGAACAAGGACCTGGATCTTCCCGCTCACAAGGTTATGGTTGCTACGGTTCGGTGTGAAGAGATAGCCAACCAGAAATTCAAACAGTTGGTCCATGATGAGCGTTGGTTAGCACTGGAAGAAGCTGTAGAAACTGGTCCGGTACAAGGCTTTGGTAAAAGGCTCAGTTCCATTCTAGCCACGTATCTTTCTGAATATGACATGGAGGCCATCTACTTTGACGAAGGTGTAAGGAACTCAAAACGACAATTTTTGGAGTCAAAAGTATTGGATTTTGTTTACCCTGCGTACTCGGCTATGCTTGGACACCTACGTTCTAAAGTGCTTGAAGATTTTCAAGTGAGGCTGGAGCAATCGCTGAACAAAGGAGAAGGATTTGCTTCATCTGTTCGTACTTGTGCTCAGTCTTCTATGCTTGAGTTTGAGAAAGGATGTGCAGATGCTGCCATACAACAAGCTAATTGGGATGCTTCAAAAGTTCGGGAAAAGCTTCGACGTGATATAGATGTACATACATCATCAGTTCGTAGTGCAAAACTGGCAGAATTGAATTCCACCTATGAGAAAAAACTTTCTTCGTCTTTAAGTGGTCCTGTAGAGGCTCTACTCGAAACTGGTGCAAAAGACACCTGGGCTTCGATACGGAAACTTCTTAATTGTGAGACCGAAGTTGCAGTATCGGAGTTCTCAACTGCAGTTGCCAATTTTGAGTTGGACAACGAAACGGTTGTCAAAATGAAGCAACATTTGAAGGATTATGCGAGAAATGTGGTGGAGACAAGAGCAAGAGAAGAGGCTGGGAAAATTATGATCCACATGAAGGATCGGTTTGGCACGGTCTTCAATTATGACAGTGATTCAATGCCAAGGGTTTGGACTGGGAAAGACGACATTAGAAGTATTACCAAGGATGCACGAACTGCGTCTCTGAAGCTTTTATCCACCATGGCTGCTATACGCTTGGATGAGAAGCCAGATAATATTGAAAATGTTCTTGTTTCTTCTCTGGTGGACGGGACTGTTACTGTTTCATCTTCACAAAATAGGAAGCTAGGACCTTCTACCGATCCTCTTGCCTCAAGCTCTTGGGAAGAGGTTTCTTCAAAGGATACCTTAATTACCCCAGTACAGTGCAAGTCAATGTGGAGGCAGTTCAAGGCAGAGACTGAATATAGCGTCACTCAAGCTATTTCGGCACAGGAGGCTCACAAGCGGAGTAACAACTGGTTACCTCCTCCATGGGCTATTATGGCGATGATCGTTCTTGGTTTTAACGAATTTATGATGCTTTTAAAGAACCCTCTCTACCTCTTGGTTCTATTTATTGTATTTTTACTTTCAAAGGCCTTATGGGTACAGATGGACATTTCGGGACAGTTCCAACATGGCGCTCTGTCAGGGATACTATCTATTTCATCGAGGTTTCTTCCAACTATCATGAATCTTCTAAGAAAACTTGCAGAAGAAGCTCAGGGGAATCAAACGCCAGAAGCACAAGGGCCACCAGTTTCTCTTGCTTCTCAGAGTTATAGAAATGAAACACCTCAGCCAAATCCAGTAACAAGCTCATTCCCGGAGTCCTCAGTGTCATCCAATATCTCGACATCAGATAGCGGCATGGAATACTCAAGCCCTCCTTTAAGACAAAGGCGAACGGCAAACGTTGAGGAAGTGGAATCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

832

Amino Acids

93.13

Weight (kDa)

5.79

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
URGCP_GTPase PF25683 39 - 166 2.4e-06 URGCP-like GTPase domain
RHD3_GTPase PF05879 44 - 279 2.4e-112 Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
Sey1_3HB PF20428 321 - 760 1.7e-142 Sey1 three-helix bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 839
AccII CGCG 1 cut(s) 767
AciI CCGC 7 cut(s) 116, 137, 147, 765, 837, 2026, 2427
AclI AACGTT 1 cut(s) 2475
AclWI GGATC 4 cut(s) 837, 1618, 1644, 1874
AcsI RAATTY 5 cut(s) 47, 620, 890, 1363, 2090
AcuI CTGAAG 1 cut(s) 1763
AfaI GTAC 8 cut(s) 582, 607, 957, 1103, 1207, 1323, 1941, 2169
AfiI CCNNNNNNNGG 3 cut(s) 770, 959, 1633
AjiI CACGTC 2 cut(s) 752, 1310
AjnI CCWGG 4 cut(s) 20, 727, 825, 1442
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
Alw21I GWGCWC 3 cut(s) 272, 790, 1216
Alw26I GTCTC 4 cut(s) 1469, 1583, 1743, 1970
Alw44I GTGCAC 2 cut(s) 268, 786
AlwI GGATC 4 cut(s) 837, 1618, 1644, 1874
AlwNI CAGNNNCTG 2 cut(s) 1256, 1979
AoxI GGCC 3 cut(s) 1020, 2157, 2312
ApaLI GTGCAC 2 cut(s) 268, 786
ApeKI GCWGC 6 cut(s) 15, 144, 419, 703, 1256, 1763
ApoI RAATTY 5 cut(s) 47, 620, 890, 1363, 2090
ArsI GACNNNNNNTTYG 4 cut(s) 888, 920, 1527, 1559
Asp700I GAANNNNTTC 3 cut(s) 1146, 1302, 1803
AspLEI GCGC 4 cut(s) 20, 347, 465, 2204
AspS9I GGNCC 7 cut(s) 134, 823, 904, 950, 1403, 1868, 2312
AsuC2I CCSGG 1 cut(s) 2387
AsuHPI GGTGA 1 cut(s) 755
AvaII GGWCC 6 cut(s) 134, 823, 904, 950, 1403, 1868
BaeGI GKGCMC 2 cut(s) 272, 790
BanII GRGCYC 1 cut(s) 66
BbsI GAAGAC 2 cut(s) 1212, 1645
Bbv12I GWGCWC 3 cut(s) 272, 790, 1216
BbvCI CCTCAGC 1 cut(s) 2358
BbvI GCAGC 6 cut(s) 2, 156, 406, 715, 1243, 1750
BccI CCATC 6 cut(s) 53, 190, 293, 569, 1031, 2167
BceAI ACGGC 2 cut(s) 250, 2484
BcgI CGANNNNNNTGC 6 cut(s) 671, 705, 1412, 1446, 1868, 1902
BciT130I CCWGG 4 cut(s) 22, 729, 827, 1444
BciVI GTATCC 2 cut(s) 1915, 2208
BcnI CCSGG 1 cut(s) 2387
BcoDI GTCTC 4 cut(s) 1469, 1583, 1743, 1970
BfaI CTAG 2 cut(s) 989, 1865
BfmI CTRYAG 4 cut(s) 630, 939, 1407, 1506
BfoI RGCGCY 2 cut(s) 348, 2205
BfuI GTATCC 2 cut(s) 1915, 2208
BisI GCNGC 7 cut(s) 16, 145, 420, 704, 1257, 1764, 2428
BlsI GCNGC 7 cut(s) 17, 146, 421, 705, 1258, 1765, 2429
Bme1390I CCNGG 5 cut(s) 22, 729, 827, 1444, 2387
Bme18I GGWCC 6 cut(s) 134, 823, 904, 950, 1403, 1868
BmgBI CACGTC 2 cut(s) 752, 1310
BmgT120I GGNCC 7 cut(s) 134, 823, 904, 950, 1403, 1868, 2312
BmiI GGNNCC 3 cut(s) 135, 218, 540
BmrFI CCNGG 5 cut(s) 22, 729, 827, 1444, 2387
BmrI ACTGGG 2 cut(s) 1701, 1931
BmsI GCATC 7 cut(s) 190, 267, 450, 1243, 1270, 1714, 2088
BmuI ACTGGG 2 cut(s) 1701, 1931
BpiI GAAGAC 2 cut(s) 1212, 1645
BpmI CTGGAG 2 cut(s) 711, 1181
Bpu10I CCTNAGC 3 cut(s) 548, 2283, 2358
BpuEI CTTGAG 5 cut(s) 634, 1250, 1876, 1980, 2425
BpuMI CCSGG 1 cut(s) 2387
BsaAI YACGTR 2 cut(s) 506, 996
BsaI GGTCTC 1 cut(s) 1469
BsaJI CCNNGG 6 cut(s) 279, 1443, 1679, 1719, 1758, 2051
BsaWI WCCGGW 1 cut(s) 952
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 3 cut(s) 770, 959, 1633
BseBI CCWGG 4 cut(s) 22, 729, 827, 1444
BseDI CCNNGG 6 cut(s) 279, 1443, 1679, 1719, 1758, 2051
BseGI GGATG 8 cut(s) 205, 325, 580, 1250, 1285, 1729, 1783, 2402
BseLI CCNNNNNNNGG 3 cut(s) 770, 959, 1633
BseMII CTCAG 8 cut(s) 87, 689, 991, 1229, 2297, 2348, 2372, 2409
BseRI GAGGAG 3 cut(s) 683, 698, 2037
BseSI GKGCMC 2 cut(s) 272, 790
BseXI GCAGC 6 cut(s) 2, 156, 406, 715, 1243, 1750
BseYI CCCAGC 1 cut(s) 1610
BsgI GTGCAG 1 cut(s) 1269
Bsh1236I CGCG 1 cut(s) 767
BshFI GGCC 3 cut(s) 1022, 2159, 2314
BsiHKAI GWGCWC 3 cut(s) 272, 790, 1216
BsiSI CCGG 2 cut(s) 953, 2387
BslFI GGGAC 5 cut(s) 53, 307, 746, 1843, 2199
BslI CCNNNNNNNGG 3 cut(s) 770, 959, 1633
BsmAI GTCTC 4 cut(s) 1469, 1583, 1743, 1970
BsmBI CGTCTC 1 cut(s) 1743
BsmFI GGGAC 5 cut(s) 53, 307, 746, 1843, 2199
BsnI GGCC 3 cut(s) 1022, 2159, 2314
Bso31I GGTCTC 1 cut(s) 1469
Bsp1286I GDGCHC 4 cut(s) 66, 272, 790, 1216
Bsp1407I TGTACA 1 cut(s) 1321
Bsp143I GATC 5 cut(s) 829, 1623, 1636, 1879, 2070
Bsp19I CCATGG 3 cut(s) 279, 1758, 2051
BspACI CCGC 7 cut(s) 116, 137, 147, 765, 837, 2026, 2427
BspANI GGCC 3 cut(s) 1022, 2159, 2314
BspCNI CTCAG 8 cut(s) 88, 690, 990, 1228, 2296, 2347, 2371, 2408
BspFNI CGCG 1 cut(s) 767
BspHI TCATGA 3 cut(s) 397, 456, 2250
BspLI GGNNCC 3 cut(s) 135, 218, 540
BspMAI CTGCAG 1 cut(s) 1510
BspPI GGATC 4 cut(s) 837, 1618, 1644, 1874
BspTNI GGTCTC 1 cut(s) 1469
BsrBI CCGCTC 1 cut(s) 839
BsrGI TGTACA 1 cut(s) 1321
BssECI CCNNGG 6 cut(s) 279, 1443, 1679, 1719, 1758, 2051
BssMI GATC 5 cut(s) 829, 1623, 1636, 1879, 2070
BssT1I CCWWGG 5 cut(s) 279, 1679, 1719, 1758, 2051
Bst2UI CCWGG 4 cut(s) 22, 729, 827, 1444
Bst6I CTCTTC 4 cut(s) 654, 867, 1599, 1899
BstAPI GCANNNNNTGC 2 cut(s) 1256, 1733
BstAUI TGTACA 1 cut(s) 1321
BstBAI YACGTR 2 cut(s) 506, 996
BstC8I GCNNGC 3 cut(s) 93, 417, 738
BstDSI CCRYGG 3 cut(s) 279, 1758, 2051
BstEII GGTNACC 1 cut(s) 2040
BstF5I GGATG 8 cut(s) 205, 325, 580, 1250, 1285, 1729, 1783, 2402
BstFNI CGCG 1 cut(s) 767
BstH2I RGCGCY 2 cut(s) 348, 2205
BstHHI GCGC 4 cut(s) 20, 347, 465, 2204
BstKTI GATC 5 cut(s) 832, 1626, 1639, 1882, 2073
BstMAI GTCTC 4 cut(s) 1469, 1583, 1743, 1970
BstMBI GATC 5 cut(s) 829, 1623, 1636, 1879, 2070
BstNI CCWGG 4 cut(s) 22, 729, 827, 1444
BstPI GGTNACC 1 cut(s) 2040
BstSCI CCNGG 5 cut(s) 20, 727, 825, 1442, 2385
BstSFI CTRYAG 4 cut(s) 630, 939, 1407, 1506
BstSLI GKGCMC 2 cut(s) 272, 790
BstUI CGCG 1 cut(s) 767
BstV1I GCAGC 6 cut(s) 2, 156, 406, 715, 1243, 1750
BstV2I GAAGAC 2 cut(s) 1212, 1645
BstX2I RGATCY 1 cut(s) 829
BstXI CCANNNNNNTGG 2 cut(s) 286, 1686
BstYI RGATCY 1 cut(s) 829
BsuI GTATCC 2 cut(s) 1915, 2208
BsuRI GGCC 3 cut(s) 1022, 2159, 2314
BtgI CCRYGG 3 cut(s) 279, 1758, 2051
BtgZI GCGATG 1 cut(s) 2081
BtrI CACGTC 2 cut(s) 752, 1310
BtsCI GGATG 8 cut(s) 205, 325, 580, 1250, 1285, 1729, 1783, 2402
BtsIMutI CAGTG 5 cut(s) 214, 926, 1672, 1949, 2403
Cac8I GCNNGC 3 cut(s) 93, 417, 738
CaiI CAGNNNCTG 2 cut(s) 1256, 1979
CciI TCATGA 3 cut(s) 397, 456, 2250
CfoI GCGC 4 cut(s) 20, 347, 465, 2204
Cfr13I GGNCC 7 cut(s) 134, 823, 904, 950, 1403, 1868, 2312
CseI GACGC 3 cut(s) 756, 1725, 1978
Csp6I GTAC 8 cut(s) 581, 606, 956, 1102, 1206, 1322, 1940, 2168
CviQI GTAC 8 cut(s) 581, 606, 956, 1102, 1206, 1322, 1940, 2168
DpnI GATC 5 cut(s) 831, 1625, 1638, 1881, 2072
DpnII GATC 5 cut(s) 829, 1623, 1636, 1879, 2070
DraI TTTAAA 1 cut(s) 2106
Eam1104I CTCTTC 4 cut(s) 654, 867, 1599, 1899
EarI CTCTTC 4 cut(s) 654, 867, 1599, 1899
Eco130I CCWWGG 5 cut(s) 279, 1679, 1719, 1758, 2051
Eco147I AGGCCT 1 cut(s) 2159
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 1469
Eco47I GGWCC 6 cut(s) 134, 823, 904, 950, 1403, 1868
Eco57I CTGAAG 1 cut(s) 1763
Eco91I GGTNACC 1 cut(s) 2040
EcoO109I RGGNCCY 2 cut(s) 823, 1868
EcoO65I GGTNACC 1 cut(s) 2040
EcoRI GAATTC 2 cut(s) 47, 1363
EcoRII CCWGG 4 cut(s) 20, 727, 825, 1442
EcoT14I CCWWGG 5 cut(s) 279, 1679, 1719, 1758, 2051
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 5 cut(s) 279, 1679, 1719, 1758, 2051
Esp3I CGTCTC 1 cut(s) 1743
FalI AAGNNNNNCTT 6 cut(s) 75, 107, 1910, 1942, 2434, 2466
FaqI GGGAC 5 cut(s) 53, 307, 746, 1843, 2199
FauI CCCGC 3 cut(s) 140, 772, 844
Fnu4HI GCNGC 7 cut(s) 16, 145, 420, 704, 1257, 1764, 2428
FokI GGATG 8 cut(s) 212, 332, 587, 1257, 1292, 1736, 1790, 2389
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 7 cut(s) 16, 145, 420, 704, 1257, 1764, 2428
FspBI CTAG 2 cut(s) 989, 1865
GlaI GCGC 4 cut(s) 19, 346, 464, 2203
GluI GCNGC 7 cut(s) 16, 145, 420, 704, 1257, 1764, 2428
GsaI CCCAGC 1 cut(s) 1614
GsuI CTGGAG 2 cut(s) 711, 1181
HaeII RGCGCY 2 cut(s) 348, 2205
HaeIII GGCC 3 cut(s) 1022, 2159, 2314
HapII CCGG 2 cut(s) 953, 2387
HgaI GACGC 3 cut(s) 756, 1725, 1978
HhaI GCGC 4 cut(s) 20, 347, 465, 2204
Hin6I GCGC 4 cut(s) 18, 345, 463, 2202
HinP1I GCGC 4 cut(s) 18, 345, 463, 2202
HindIII AAGCTT 3 cut(s) 89, 1301, 1745
HinfI GANTC 8 cut(s) 105, 166, 1070, 1670, 2254, 2290, 2390, 2489
HpaII CCGG 2 cut(s) 953, 2387
HphI GGTGA 1 cut(s) 755
Hpy166II GTNNAC 5 cut(s) 104, 270, 788, 1093, 1825
Hpy188I TCNGA 7 cut(s) 180, 370, 1006, 1495, 1743, 2337, 2422
Hpy8I GTNNAC 5 cut(s) 104, 270, 788, 1093, 1825
Hpy99I CGWCG 1 cut(s) 1311
HpyAV CCTTC 8 cut(s) 73, 207, 658, 1031, 1178, 1558, 1627, 1881
HpyCH4IV ACGT 6 cut(s) 505, 751, 995, 1126, 1309, 2475
HpySE526I ACGT 6 cut(s) 505, 751, 995, 1126, 1309, 2475
HspAI GCGC 4 cut(s) 18, 345, 463, 2202
Kzo9I GATC 5 cut(s) 829, 1623, 1636, 1879, 2070
LmnI GCTCC 3 cut(s) 216, 412, 1162
Lsp1109I GCAGC 6 cut(s) 2, 156, 406, 715, 1243, 1750
LweI GCATC 7 cut(s) 190, 267, 450, 1243, 1270, 1714, 2088
MaeI CTAG 2 cut(s) 989, 1865
MaeII ACGT 6 cut(s) 505, 751, 995, 1126, 1309, 2475
MaeIII GTNAC 6 cut(s) 489, 1834, 1990, 2030, 2040, 2371
MalI GATC 5 cut(s) 831, 1625, 1638, 1881, 2072
MbiI CCGCTC 1 cut(s) 839
MboI GATC 5 cut(s) 829, 1623, 1636, 1879, 2070
MflI RGATCY 1 cut(s) 829
MhlI GDGCHC 4 cut(s) 66, 272, 790, 1216
MlyI GAGTC 3 cut(s) 99, 1079, 2399
MmeI TCCRAC 3 cut(s) 1506, 2218, 2267
MroXI GAANNNNTTC 3 cut(s) 1146, 1302, 1803
MseI TTAA 7 cut(s) 678, 1397, 1467, 1928, 2085, 2105, 2453
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 2 cut(s) 953, 2387
MspR9I CCNGG 5 cut(s) 22, 729, 827, 1444, 2387
MvaI CCWGG 4 cut(s) 22, 729, 827, 1444
MvnI CGCG 1 cut(s) 767
NciI CCSGG 1 cut(s) 2387
NcoI CCATGG 3 cut(s) 279, 1758, 2051
NdeII GATC 5 cut(s) 829, 1623, 1636, 1879, 2070
NlaIV GGNNCC 3 cut(s) 135, 218, 540
NmeAIII GCCGAG 1 cut(s) 1085
NmuCI GTSAC 1 cut(s) 1990
PagI TCATGA 3 cut(s) 397, 456, 2250
PceI AGGCCT 1 cut(s) 2159
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdmI GAANNNNTTC 3 cut(s) 1146, 1302, 1803
PfeI GAWTC 5 cut(s) 166, 1670, 2254, 2290, 2489
PfoI TCCNGGA 2 cut(s) 727, 2385
PkrI GCNGC 7 cut(s) 17, 146, 421, 705, 1258, 1765, 2429
PleI GAGTC 3 cut(s) 99, 1078, 2398
PpsI GAGTC 3 cut(s) 99, 1078, 2398
Ppu21I YACGTR 2 cut(s) 506, 996
PpuMI RGGWCCY 2 cut(s) 823, 1868
Psp1406I AACGTT 1 cut(s) 2475
Psp5II RGGWCCY 2 cut(s) 823, 1868
Psp6I CCWGG 4 cut(s) 20, 727, 825, 1442
PspEI GGTNACC 1 cut(s) 2040
PspFI CCCAGC 1 cut(s) 1610
PspGI CCWGG 4 cut(s) 20, 727, 825, 1442
PspN4I GGNNCC 3 cut(s) 135, 218, 540
PspPI GGNCC 7 cut(s) 134, 823, 904, 950, 1403, 1868, 2312
PspPPI RGGWCCY 2 cut(s) 823, 1868
PsrI GAACNNNNNNTAC 2 cut(s) 2102, 2134
PstI CTGCAG 1 cut(s) 1510
PstNI CAGNNNCTG 2 cut(s) 1256, 1979
PsuI RGATCY 1 cut(s) 829
RsaI GTAC 8 cut(s) 582, 607, 957, 1103, 1207, 1323, 1941, 2169
RsaNI GTAC 8 cut(s) 581, 606, 956, 1102, 1206, 1322, 1940, 2168
SaqAI TTAA 7 cut(s) 678, 1397, 1467, 1928, 2085, 2105, 2453
SatI GCNGC 7 cut(s) 16, 145, 420, 704, 1257, 1764, 2428
Sau3AI GATC 5 cut(s) 829, 1623, 1636, 1879, 2070
Sau96I GGNCC 7 cut(s) 134, 823, 904, 950, 1403, 1868, 2312
SchI GAGTC 3 cut(s) 99, 1079, 2399
ScrFI CCNGG 5 cut(s) 22, 729, 827, 1444, 2387
SduI GDGCHC 4 cut(s) 66, 272, 790, 1216
SfaNI GCATC 7 cut(s) 190, 267, 450, 1243, 1270, 1714, 2088
SfcI CTRYAG 4 cut(s) 630, 939, 1407, 1506
SinI GGWCC 6 cut(s) 134, 823, 904, 950, 1403, 1868
SmlI CTYRAG 5 cut(s) 613, 1229, 1891, 1995, 2440
SmoI CTYRAG 5 cut(s) 613, 1229, 1891, 1995, 2440
SseBI AGGCCT 1 cut(s) 2159
SsiI CCGC 7 cut(s) 116, 137, 147, 765, 837, 2026, 2427
SspI AATATT 1 cut(s) 1795
SspMI CTAG 2 cut(s) 989, 1865
StuI AGGCCT 1 cut(s) 2159
StyD4I CCNGG 5 cut(s) 20, 727, 825, 1442, 2385
StyI CCWWGG 5 cut(s) 279, 1679, 1719, 1758, 2051
TaiI ACGT 6 cut(s) 508, 754, 998, 1129, 1312, 2478
TaqI TCGA 8 cut(s) 66, 261, 333, 1306, 1422, 1451, 2231, 2414
TaqII GACCGA 1 cut(s) 1493
TatI WGTACW 2 cut(s) 1321, 1939
TauI GCSGC 1 cut(s) 2430
TfiI GAWTC 5 cut(s) 166, 1670, 2254, 2290, 2489
Tru1I TTAA 7 cut(s) 678, 1397, 1467, 1928, 2085, 2105, 2453
Tru9I TTAA 7 cut(s) 678, 1397, 1467, 1928, 2085, 2105, 2453
TscAI CASTG 5 cut(s) 214, 933, 1672, 1949, 2403
TseFI GTSAC 1 cut(s) 1990
TseI GCWGC 6 cut(s) 15, 144, 419, 703, 1256, 1763
Tsp45I GTSAC 1 cut(s) 1990
TspDTI ATGAA 8 cut(s) 672, 1185, 1565, 1646, 1833, 2217, 2267, 2364
TspGWI ACGGA 2 cut(s) 57, 1471
TspRI CASTG 5 cut(s) 214, 933, 1672, 1949, 2403
VneI GTGCAC 2 cut(s) 268, 786
VpaK11BI GGWCC 6 cut(s) 134, 823, 904, 950, 1403, 1868
XapI RAATTY 5 cut(s) 47, 620, 890, 1363, 2090
XcmI CCANNNNNNNNNTGG 1 cut(s) 1522
XmnI GAANNNNTTC 3 cut(s) 1146, 1302, 1803
XspI CTAG 2 cut(s) 989, 1865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.