pycom05g23630

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000525
Physical Location & Seq
Forward (+)
25451932 .. 25457764
5833 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23630.16

Sequence Viewer

Length: 2340 bp
ATGGATGCTTACAGTGGAAGGTTAGTTTCTGAGTTTGGAATTGGTTGTGTTGTCAATTTTGGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATATGTGTTTTTTGGGAGAGAGGTCTATCTGATTTTGTGGATTTGTTATAGGAGCCAAACTACAAAGGGTATTTGGATTGCCAAGTGTGTTGGCATTGAGCCGTGCACGATTGCCATGGATTTGGAGGGGACTGATGGGAGGGAGAGGGGCGAGGTCATGATGCGCCTATTCAGCCCCCGTAAAACGACATTACTTTTTGTTATACGTGATAAAACAAAGACTCCTTTTGAATACCTGGAACCTATGCTAAGGGAAGATATACAAAAGATATGGGATGGAGTACCGAAGCCCCAAGCCCATAAAAGCACCCCATTGAGTGAATTTTTTATTGTGAGATCTCTTATACTCTTCTCTATTCTCTGGTCAACTTTGCTCTGTATAATGTTCTCATCAGTCAAGTTTGTTGTCTCTGATACGTCATTCTTCGATGTTGCTCAACTGAGGCAGCGCTTTTTCCATTCTATTTCTCCAGGAGGGCTTGCTGGCGATAGAAGGGGTGTTGTCCCAGCGTCAGGATTTTCTTTTAGTGCACAACAGATTTGGAAAGTAATCAAAGAGAACAAGGACTTGGATCTTCCCGCTCACAAGGTTATGGTTGCTACGGTTCGGTGTGAAGAGATTGCCAACCAGAAATTCAAACAGTTGGTCCATGATGAGGGTTGGTTAGCACTGCAAGAAGCTGTTGAAACTGGTCCCGTACAAGGCTTTGGTAAAAGGCTCAGTTCCATTCTAGTCACCTATCTTTCCAAGTATGACATGGAGGCCATCTACTTTGATGAAGGTGTAAGGAACTCAAAACGACAACTGTTGGAGTCAAAAGCATTGGATTTTGTTTACCCTGCGTACTCGGCCATGCTCGGACACCTACGTTCTAAAGCCTTCGAAGATTTTCAAGTGAGGCTGGAGCAGTCGTTGAACAAAGGAGAAGGATTCGCTTCATCTGCTCGTACCTGTGCTCAGTCTTCTATGCTTGAGTTTGAGAAAGGATGTGCAGATGCTACCATACAACAAGCTAATTGGGATGCTTCAAAAGTCCGGGAAAAGCTTCGACGTGATATAGATGCACATGCATCATCGGTTCGTAGTGCAAAACTGGCAGAATTGAATTCCAACTATGAGAAAAAACTTTCTTCGTCTTTAAGCGGTCCTGTAGAGGCTCTACTGGAAACTGGTGCAAATGACACCTGGGCTTCGATACGAAAACTCCTTAATCGTGAGACCAAAGTTGCAGTATCGGAGTTCTCAACTGCAGTTGCCAATTTTGAGTTGGACAATGAAACGGTTGTCAAAATGAAGGAGCATTTGAAGGATTATGCTAGAAATGTGGTGGAGACAAAAGCAAGAGAAGAGGCTGGGAAAATTATGATCCACATGAAGGATCGGTTTGCCGCAGTGTTCAATTATGACAGCGATTCAATGCCTAGGGTTTGGACTGGGAACGAAGACATTAGAAGTATTACCAAGGATGCACGAACTGCGTCTCTGAAGCTTTTGTCGACCATGGCTGCCATTCGCTTGGATGAGAAGCCTGATAATATTGAAAATGTCCTCGTTTCTTCTCTGGTGGACGGGACTGTTACTGTTTCATCTTCACAAAATAGGAAACTAGGACCTTCTACAGATCCTCTTGCCTCAAGCTCTTGGGAAGAGGTTTCTTCAAAGGATACCTTAATTACCCCAGTACAGTGCAAGTCATTGTGGAGGCAGTTCAAAGCAGAGACCGAATATAGCGTCACTCAAGCTATTGCAGCACAGGAGGCTCACAAGCAGAGTAACAACTGGTTACCTCCTCCATGGGCTATAATGGCGATGATCGTTCTTGGTTTTAACGAATTTATGATGCTTTTAAAGAACCCTCTCTACCTCATGGTTCTATTTGTTGCATTTTTACTTGCAAAGGCCTTATGGGTACAGATGGACATCACGGGACAGTTCCAGCATGGCGCTCTGTCAGGAATACTGTCTATCTCATCAAGGTTTCTTCCAACCGTCATGAATCTTCTAAGAAAACTCGCAGAAGAAGCTCAGGGGAATCAAACACCGGAAGCACAAAGGCGGCCAGTTTCTCTTTCTTCTCAGAGTTATAGAAATGAAACACCTCAGCCAAATCCAGCAACAAGCTCATTCCCGGAGTCCTCAGTGTCATCCAATATCTCGTCATCAGATACCGGCATGGAATACTCAAGCCCTCCTTTAAGACAAAGGCGAACGGCAAACGTTGAGGAAGTTGAATCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

780

Amino Acids

87.7

Weight (kDa)

6.83

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 680
AccI GTMKAC 1 cut(s) 1595
AciI CCGC 4 cut(s) 678, 1242, 1488, 2155
AclI AACGTT 1 cut(s) 2316
AclWI GGATC 4 cut(s) 678, 1459, 1485, 1715
AcoI YGGCCR 2 cut(s) 948, 2156
AcsI RAATTY 4 cut(s) 419, 731, 1204, 1931
AcuI CTGAAG 1 cut(s) 1604
AfaI GTAC 6 cut(s) 381, 798, 944, 1048, 1782, 2010
AfeI AGCGCT 1 cut(s) 548
AfiI CCNNNNNNNGG 4 cut(s) 611, 754, 800, 1474
AjiI CACGTC 1 cut(s) 1151
AjnI CCWGG 3 cut(s) 333, 568, 1283
AjuI GAANNNNNNNTTGG 4 cut(s) 650, 682, 716, 748
AluBI AGCT 8 cut(s) 779, 1112, 1144, 1588, 1737, 1841, 2123, 2220
AluI AGCT 8 cut(s) 779, 1112, 1144, 1588, 1737, 1841, 2123, 2220
Alw21I GWGCWC 3 cut(s) 206, 631, 1057
Alw26I GTCTC 5 cut(s) 511, 1310, 1424, 1584, 1811
Alw44I GTGCAC 2 cut(s) 202, 627
AlwI GGATC 4 cut(s) 678, 1459, 1485, 1715
Aor51HI AGCGCT 1 cut(s) 548
AoxI GGCC 4 cut(s) 861, 948, 1998, 2156
ApaLI GTGCAC 2 cut(s) 202, 627
ApeKI GCWGC 3 cut(s) 544, 1604, 1847
ApoI RAATTY 4 cut(s) 419, 731, 1204, 1931
ArsI GACNNNNNNTTYG 4 cut(s) 729, 761, 1815, 1847
Asp700I GAANNNNTTC 2 cut(s) 987, 1143
AspA2I CCTAGG 1 cut(s) 1520
AspLEI GCGC 3 cut(s) 264, 549, 2045
AspS9I GGNCC 4 cut(s) 745, 791, 1244, 1709
AsuC2I CCSGG 2 cut(s) 1136, 2228
AsuHPI GGTGA 1 cut(s) 826
AsuII TTCGAA 1 cut(s) 981
AvaII GGWCC 4 cut(s) 745, 791, 1244, 1709
AvrII CCTAGG 1 cut(s) 1520
BaeGI GKGCMC 2 cut(s) 206, 631
BbsI GAAGAC 2 cut(s) 1053, 1548
Bbv12I GWGCWC 3 cut(s) 206, 631, 1057
BbvCI CCTCAGC 1 cut(s) 2199
BbvI GCAGC 3 cut(s) 556, 1591, 1859
BccI CCATC 4 cut(s) 227, 368, 872, 2008
BceAI ACGGC 2 cut(s) 184, 2325
BciT130I CCWGG 3 cut(s) 335, 570, 1285
BciVI GTATCC 1 cut(s) 1756
BcnI CCSGG 2 cut(s) 1136, 2228
BcoDI GTCTC 5 cut(s) 511, 1310, 1424, 1584, 1811
BfaI CTAG 4 cut(s) 830, 1416, 1521, 1706
BfmI CTRYAG 3 cut(s) 1248, 1347, 1716
BfoI RGCGCY 2 cut(s) 550, 2046
BfuI GTATCC 1 cut(s) 1756
BglII AGATCT 1 cut(s) 434
BisI GCNGC 5 cut(s) 545, 1488, 1605, 1848, 2156
BlnI CCTAGG 1 cut(s) 1520
BlsI GCNGC 5 cut(s) 546, 1489, 1606, 1849, 2157
Bme1390I CCNGG 5 cut(s) 335, 570, 1136, 1285, 2228
Bme18I GGWCC 4 cut(s) 745, 791, 1244, 1709
BmgBI CACGTC 1 cut(s) 1151
BmgT120I GGNCC 4 cut(s) 745, 791, 1244, 1709
BmiI GGNNCC 3 cut(s) 152, 339, 793
BmrFI CCNGG 5 cut(s) 335, 570, 1136, 1285, 2228
BmrI ACTGGG 2 cut(s) 1542, 1772
BmsI GCATC 7 cut(s) 249, 1084, 1111, 1150, 1178, 1555, 1929
BmuI ACTGGG 2 cut(s) 1542, 1772
BpiI GAAGAC 2 cut(s) 1053, 1548
BpmI CTGGAG 2 cut(s) 552, 1022
Bpu10I CCTNAGC 3 cut(s) 347, 2124, 2199
Bpu14I TTCGAA 1 cut(s) 981
BpuEI CTTGAG 4 cut(s) 1091, 1717, 1821, 2266
BpuMI CCSGG 2 cut(s) 1136, 2228
BsaAI YACGTR 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 2018
BsaI GGTCTC 2 cut(s) 1310, 1811
BsaJI CCNNGG 6 cut(s) 213, 1284, 1520, 1560, 1599, 1892
BsaWI WCCGGW 1 cut(s) 2140
BsaXI ACNNNNNCTCC 6 cut(s) 304, 334, 995, 1025, 1287, 1317
Bsc4I CCNNNNNNNGG 4 cut(s) 611, 754, 800, 1474
Bse118I RCCGGY 1 cut(s) 2267
Bse1I ACTGG 8 cut(s) 793, 1197, 1266, 1273, 1537, 1778, 1883, 2159
Bse8I GATNNNNATC 1 cut(s) 2018
BseBI CCWGG 3 cut(s) 335, 570, 1285
BseDI CCNNGG 6 cut(s) 213, 1284, 1520, 1560, 1599, 1892
BseGI GGATG 7 cut(s) 10, 379, 1091, 1126, 1570, 1624, 2243
BseJI GATNNNNATC 1 cut(s) 2018
BseLI CCNNNNNNNGG 4 cut(s) 611, 754, 800, 1474
BseMII CTCAG 8 cut(s) 21, 530, 832, 1070, 2138, 2189, 2213, 2250
BseNI ACTGG 8 cut(s) 793, 1197, 1266, 1273, 1537, 1778, 1883, 2159
BseRI GAGGAG 1 cut(s) 1878
BseSI GKGCMC 2 cut(s) 206, 631
BseXI GCAGC 3 cut(s) 556, 1591, 1859
BseYI CCCAGC 2 cut(s) 604, 1451
BsgI GTGCAG 1 cut(s) 1110
BshFI GGCC 4 cut(s) 863, 950, 2000, 2158
BsiHKAI GWGCWC 3 cut(s) 206, 631, 1057
BsiSI CCGG 4 cut(s) 1135, 2141, 2228, 2268
BslFI GGGAC 5 cut(s) 241, 587, 777, 1684, 2040
BslI CCNNNNNNNGG 4 cut(s) 611, 754, 800, 1474
BsmAI GTCTC 5 cut(s) 511, 1310, 1424, 1584, 1811
BsmBI CGTCTC 1 cut(s) 1584
BsmFI GGGAC 5 cut(s) 241, 587, 777, 1684, 2040
BsnI GGCC 4 cut(s) 863, 950, 2000, 2158
Bso31I GGTCTC 2 cut(s) 1310, 1811
Bsp119I TTCGAA 1 cut(s) 981
Bsp1286I GDGCHC 3 cut(s) 206, 631, 1057
Bsp143I GATC 6 cut(s) 434, 670, 1464, 1477, 1720, 1911
Bsp19I CCATGG 3 cut(s) 213, 1599, 1892
BspACI CCGC 4 cut(s) 678, 1242, 1488, 2155
BspANI GGCC 4 cut(s) 863, 950, 2000, 2158
BspCNI CTCAG 8 cut(s) 22, 531, 831, 1069, 2137, 2188, 2212, 2249
BspHI TCATGA 3 cut(s) 255, 2091, 2336
BspLI GGNNCC 3 cut(s) 152, 339, 793
BspMAI CTGCAG 1 cut(s) 1351
BspPI GGATC 4 cut(s) 678, 1459, 1485, 1715
BspT104I TTCGAA 1 cut(s) 981
BspTNI GGTCTC 2 cut(s) 1310, 1811
BsrBI CCGCTC 1 cut(s) 680
BsrFI RCCGGY 1 cut(s) 2267
BsrI ACTGG 8 cut(s) 793, 1197, 1266, 1273, 1537, 1778, 1883, 2159
BssAI RCCGGY 1 cut(s) 2267
BssECI CCNNGG 6 cut(s) 213, 1284, 1520, 1560, 1599, 1892
BssMI GATC 6 cut(s) 434, 670, 1464, 1477, 1720, 1911
BssT1I CCWWGG 5 cut(s) 213, 1520, 1560, 1599, 1892
Bst2UI CCWGG 3 cut(s) 335, 570, 1285
Bst6I CTCTTC 4 cut(s) 452, 708, 1440, 1740
BstAPI GCANNNNNTGC 1 cut(s) 1574
BstBAI YACGTR 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 981
BstC8I GCNNGC 2 cut(s) 579, 583
BstDSI CCRYGG 3 cut(s) 213, 1599, 1892
BstEII GGTNACC 1 cut(s) 1881
BstF5I GGATG 7 cut(s) 10, 379, 1091, 1126, 1570, 1624, 2243
BstH2I RGCGCY 2 cut(s) 550, 2046
BstHHI GCGC 3 cut(s) 264, 549, 2045
BstKTI GATC 6 cut(s) 437, 673, 1467, 1480, 1723, 1914
BstMAI GTCTC 5 cut(s) 511, 1310, 1424, 1584, 1811
BstMBI GATC 6 cut(s) 434, 670, 1464, 1477, 1720, 1911
BstMWI GCNNNNNNNGC 9 cut(s) 270, 947, 1040, 1193, 1574, 1847, 1856, 1904, 2120
BstNI CCWGG 3 cut(s) 335, 570, 1285
BstNSI RCATGY 1 cut(s) 1169
BstPI GGTNACC 1 cut(s) 1881
BstSCI CCNGG 5 cut(s) 333, 568, 1134, 1283, 2226
BstSFI CTRYAG 3 cut(s) 1248, 1347, 1716
BstSLI GKGCMC 2 cut(s) 206, 631
BstV1I GCAGC 3 cut(s) 556, 1591, 1859
BstV2I GAAGAC 2 cut(s) 1053, 1548
BstX2I RGATCY 3 cut(s) 434, 670, 1720
BstXI CCANNNNNNTGG 2 cut(s) 220, 1615
BstYI RGATCY 3 cut(s) 434, 670, 1720
BsuI GTATCC 1 cut(s) 1756
BsuRI GGCC 4 cut(s) 863, 950, 2000, 2158
BtgI CCRYGG 3 cut(s) 213, 1599, 1892
BtgZI GCGATG 1 cut(s) 1922
BtrI CACGTC 1 cut(s) 1151
BtsCI GGATG 7 cut(s) 10, 379, 1091, 1126, 1570, 1624, 2243
BtsI GCAGTG 2 cut(s) 767, 1497
BtsIMutI CAGTG 5 cut(s) 19, 767, 1497, 1790, 2244
Cac8I GCNNGC 2 cut(s) 579, 583
CciI TCATGA 3 cut(s) 255, 2091, 2336
CfoI GCGC 3 cut(s) 264, 549, 2045
Cfr10I RCCGGY 1 cut(s) 2267
Cfr13I GGNCC 4 cut(s) 745, 791, 1244, 1709
CseI GACGC 3 cut(s) 597, 1566, 1819
Csp6I GTAC 6 cut(s) 380, 797, 943, 1047, 1781, 2009
CviQI GTAC 6 cut(s) 380, 797, 943, 1047, 1781, 2009
DpnI GATC 6 cut(s) 436, 672, 1466, 1479, 1722, 1913
DpnII GATC 6 cut(s) 434, 670, 1464, 1477, 1720, 1911
DraI TTTAAA 1 cut(s) 1947
EaeI YGGCCR 2 cut(s) 948, 2156
Eam1104I CTCTTC 4 cut(s) 452, 708, 1440, 1740
EarI CTCTTC 4 cut(s) 452, 708, 1440, 1740
Eco130I CCWWGG 5 cut(s) 213, 1520, 1560, 1599, 1892
Eco147I AGGCCT 1 cut(s) 2000
Eco31I GGTCTC 2 cut(s) 1310, 1811
Eco47I GGWCC 4 cut(s) 745, 791, 1244, 1709
Eco47III AGCGCT 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 1604
Eco91I GGTNACC 1 cut(s) 1881
EcoO109I RGGNCCY 1 cut(s) 1709
EcoO65I GGTNACC 1 cut(s) 1881
EcoRI GAATTC 1 cut(s) 1204
EcoRII CCWGG 3 cut(s) 333, 568, 1283
EcoT14I CCWWGG 5 cut(s) 213, 1520, 1560, 1599, 1892
EcoT22I ATGCAT 1 cut(s) 1171
ErhI CCWWGG 5 cut(s) 213, 1520, 1560, 1599, 1892
Esp3I CGTCTC 1 cut(s) 1584
FalI AAGNNNNNCTT 4 cut(s) 1751, 1783, 2275, 2307
FaqI GGGAC 5 cut(s) 241, 587, 777, 1684, 2040
FauI CCCGC 1 cut(s) 685
FblI GTMKAC 1 cut(s) 1595
Fnu4HI GCNGC 5 cut(s) 545, 1488, 1605, 1848, 2156
FokI GGATG 7 cut(s) 17, 386, 1098, 1133, 1577, 1631, 2230
Fsp4HI GCNGC 5 cut(s) 545, 1488, 1605, 1848, 2156
FspBI CTAG 4 cut(s) 830, 1416, 1521, 1706
GlaI GCGC 3 cut(s) 263, 548, 2044
GluI GCNGC 5 cut(s) 545, 1488, 1605, 1848, 2156
GsaI CCCAGC 2 cut(s) 608, 1455
GsuI CTGGAG 2 cut(s) 552, 1022
HaeII RGCGCY 2 cut(s) 550, 2046
HaeIII GGCC 4 cut(s) 863, 950, 2000, 2158
HapII CCGG 4 cut(s) 1135, 2141, 2228, 2268
HgaI GACGC 3 cut(s) 597, 1566, 1819
HhaI GCGC 3 cut(s) 264, 549, 2045
Hin6I GCGC 3 cut(s) 262, 547, 2043
HinP1I GCGC 3 cut(s) 262, 547, 2043
HincII GTYRAC 2 cut(s) 465, 1596
HindII GTYRAC 2 cut(s) 465, 1596
HindIII AAGCTT 2 cut(s) 1142, 1586
HinfI GANTC 8 cut(s) 319, 911, 1029, 1511, 2095, 2131, 2231, 2330
HpaII CCGG 4 cut(s) 1135, 2141, 2228, 2268
HphI GGTGA 1 cut(s) 826
Hpy166II GTNNAC 6 cut(s) 204, 465, 629, 934, 1596, 1666
Hpy188I TCNGA 8 cut(s) 31, 129, 511, 959, 1336, 1584, 2178, 2263
Hpy188III TCNNGA 6 cut(s) 256, 612, 1313, 2052, 2092, 2337
Hpy8I GTNNAC 6 cut(s) 204, 465, 629, 934, 1596, 1666
Hpy99I CGWCG 1 cut(s) 1152
HpyAV CCTTC 9 cut(s) 12, 585, 872, 988, 1019, 1387, 1399, 1468, 1722
HpyCH4IV ACGT 5 cut(s) 304, 515, 967, 1150, 2316
HpyF10VI GCNNNNNNNGC 9 cut(s) 270, 947, 1040, 1193, 1574, 1847, 1856, 1904, 2120
HpySE526I ACGT 5 cut(s) 304, 515, 967, 1150, 2316
HspAI GCGC 3 cut(s) 262, 547, 2043
Kzo9I GATC 6 cut(s) 434, 670, 1464, 1477, 1720, 1911
LmnI GCTCC 3 cut(s) 150, 1003, 1396
Lsp1109I GCAGC 3 cut(s) 556, 1591, 1859
LweI GCATC 7 cut(s) 249, 1084, 1111, 1150, 1178, 1555, 1929
MaeI CTAG 4 cut(s) 830, 1416, 1521, 1706
MaeII ACGT 5 cut(s) 304, 515, 967, 1150, 2316
MaeIII GTNAC 5 cut(s) 832, 1675, 1831, 1871, 1881
MalI GATC 6 cut(s) 436, 672, 1466, 1479, 1722, 1913
MbiI CCGCTC 1 cut(s) 680
MboI GATC 6 cut(s) 434, 670, 1464, 1477, 1720, 1911
MflI RGATCY 3 cut(s) 434, 670, 1720
MhlI GDGCHC 3 cut(s) 206, 631, 1057
MlyI GAGTC 3 cut(s) 313, 920, 2240
MmeI TCCRAC 4 cut(s) 888, 1233, 1347, 2108
Mph1103I ATGCAT 1 cut(s) 1171
MroXI GAANNNNTTC 2 cut(s) 987, 1143
MseI TTAA 6 cut(s) 1238, 1308, 1769, 1926, 1946, 2294
MspI CCGG 4 cut(s) 1135, 2141, 2228, 2268
MspR9I CCNGG 5 cut(s) 335, 570, 1136, 1285, 2228
MvaI CCWGG 3 cut(s) 335, 570, 1285
MwoI GCNNNNNNNGC 9 cut(s) 270, 947, 1040, 1193, 1574, 1847, 1856, 1904, 2120
NciI CCSGG 2 cut(s) 1136, 2228
NcoI CCATGG 3 cut(s) 213, 1599, 1892
NdeII GATC 6 cut(s) 434, 670, 1464, 1477, 1720, 1911
NlaIV GGNNCC 3 cut(s) 152, 339, 793
NmeAIII GCCGAG 1 cut(s) 926
NmuCI GTSAC 2 cut(s) 832, 1831
NsiI ATGCAT 1 cut(s) 1171
NspI RCATGY 1 cut(s) 1169
NspV TTCGAA 1 cut(s) 981
PagI TCATGA 3 cut(s) 255, 2091, 2336
PceI AGGCCT 1 cut(s) 2000
PdmI GAANNNNTTC 2 cut(s) 987, 1143
PfeI GAWTC 5 cut(s) 1029, 1511, 2095, 2131, 2330
PfoI TCCNGGA 3 cut(s) 568, 1134, 2226
PkrI GCNGC 5 cut(s) 546, 1489, 1606, 1849, 2157
PleI GAGTC 3 cut(s) 313, 919, 2239
PpsI GAGTC 3 cut(s) 313, 919, 2239
Ppu21I YACGTR 1 cut(s) 305
PpuMI RGGWCCY 1 cut(s) 1709
Psp1406I AACGTT 1 cut(s) 2316
Psp5II RGGWCCY 1 cut(s) 1709
Psp6I CCWGG 3 cut(s) 333, 568, 1283
PspEI GGTNACC 1 cut(s) 1881
PspFI CCCAGC 2 cut(s) 604, 1451
PspGI CCWGG 3 cut(s) 333, 568, 1283
PspN4I GGNNCC 3 cut(s) 152, 339, 793
PspPI GGNCC 4 cut(s) 745, 791, 1244, 1709
PspPPI RGGWCCY 1 cut(s) 1709
PsrI GAACNNNNNNTAC 2 cut(s) 1943, 1975
PstI CTGCAG 1 cut(s) 1351
PsuI RGATCY 3 cut(s) 434, 670, 1720
RsaI GTAC 6 cut(s) 381, 798, 944, 1048, 1782, 2010
RsaNI GTAC 6 cut(s) 380, 797, 943, 1047, 1781, 2009
SalI GTCGAC 1 cut(s) 1594
SaqAI TTAA 6 cut(s) 1238, 1308, 1769, 1926, 1946, 2294
SatI GCNGC 5 cut(s) 545, 1488, 1605, 1848, 2156
Sau3AI GATC 6 cut(s) 434, 670, 1464, 1477, 1720, 1911
Sau96I GGNCC 4 cut(s) 745, 791, 1244, 1709
SchI GAGTC 3 cut(s) 313, 920, 2240
ScrFI CCNGG 5 cut(s) 335, 570, 1136, 1285, 2228
SduI GDGCHC 3 cut(s) 206, 631, 1057
SfaNI GCATC 7 cut(s) 249, 1084, 1111, 1150, 1178, 1555, 1929
SfcI CTRYAG 3 cut(s) 1248, 1347, 1716
SfuI TTCGAA 1 cut(s) 981
SinI GGWCC 4 cut(s) 745, 791, 1244, 1709
SmlI CTYRAG 4 cut(s) 1070, 1732, 1836, 2281
SmoI CTYRAG 4 cut(s) 1070, 1732, 1836, 2281
SseBI AGGCCT 1 cut(s) 2000
SsiI CCGC 4 cut(s) 678, 1242, 1488, 2155
SspI AATATT 1 cut(s) 1636
SspMI CTAG 4 cut(s) 830, 1416, 1521, 1706
StuI AGGCCT 1 cut(s) 2000
StyD4I CCNGG 5 cut(s) 333, 568, 1134, 1283, 2226
StyI CCWWGG 5 cut(s) 213, 1520, 1560, 1599, 1892
TaiI ACGT 5 cut(s) 307, 518, 970, 1153, 2319
TaqI TCGA 5 cut(s) 525, 981, 1147, 1292, 1595
TaqII GACCGA 1 cut(s) 1835
TatI WGTACW 1 cut(s) 1780
TauI GCSGC 2 cut(s) 1490, 2158
TfiI GAWTC 5 cut(s) 1029, 1511, 2095, 2131, 2330
Tru1I TTAA 6 cut(s) 1238, 1308, 1769, 1926, 1946, 2294
Tru9I TTAA 6 cut(s) 1238, 1308, 1769, 1926, 1946, 2294
TscAI CASTG 5 cut(s) 19, 774, 1497, 1790, 2244
TseFI GTSAC 2 cut(s) 832, 1831
TseI GCWGC 3 cut(s) 544, 1604, 1847
Tsp45I GTSAC 2 cut(s) 832, 1831
TspDTI ATGAA 9 cut(s) 891, 1026, 1389, 1406, 1487, 1674, 2108, 2205, 2325
TspRI CASTG 5 cut(s) 19, 774, 1497, 1790, 2244
VneI GTGCAC 2 cut(s) 202, 627
VpaK11BI GGWCC 4 cut(s) 745, 791, 1244, 1709
XapI RAATTY 4 cut(s) 419, 731, 1204, 1931
XceI RCATGY 1 cut(s) 1169
XcmI CCANNNNNNNNNTGG 2 cut(s) 853, 1363
XmaJI CCTAGG 1 cut(s) 1520
XmiI GTMKAC 1 cut(s) 1595
XmnI GAANNNNTTC 2 cut(s) 987, 1143
XspI CTAG 4 cut(s) 830, 1416, 1521, 1706
Zsp2I ATGCAT 1 cut(s) 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.