Protein ROOT HAIR DEFECTIVE 3 homolog
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| URGCP_GTPase | PF25683 | 33 - 132 | 3.8e-07 | URGCP-like GTPase domain |
| RHD3_GTPase | PF05879 | 44 - 151 | 4.3e-47 | Root hair defective 3 GTP-binding protein (RHD3) GTPase domain |
| RHD3_GTPase | PF05879 | 151 - 241 | 5.3e-21 | Root hair defective 3 GTP-binding protein (RHD3) GTPase domain |
| Sey1_3HB | PF20428 | 283 - 384 | 7.7e-14 | Sey1 three-helix bundle domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1236 |
| AarI | CACCTGC | 1 cut(s) | 614 |
| Acc36I | ACCTGC | 1 cut(s) | 614 |
| AciI | CCGC | 2 cut(s) | 102, 147 |
| AclWI | GGATC | 1 cut(s) | 1059 |
| AcoI | YGGCCR | 1 cut(s) | 243 |
| AcsI | RAATTY | 5 cut(s) | 185, 485, 659, 1034, 1355 |
| AcuI | CTGAAG | 2 cut(s) | 1128, 1349 |
| AfaI | GTAC | 4 cut(s) | 843, 992, 1021, 1148 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 550, 655, 799 |
| AflIII | ACRYGT | 1 cut(s) | 823 |
| AgsI | TTSAA | 4 cut(s) | 52, 166, 598, 811 |
| AjiI | CACGTC | 1 cut(s) | 824 |
| AjnI | CCWGG | 2 cut(s) | 315, 649 |
| AluBI | AGCT | 7 cut(s) | 72, 91, 341, 862, 867, 1333, 1424 |
| AluI | AGCT | 7 cut(s) | 72, 91, 341, 862, 867, 1333, 1424 |
| Alw21I | GWGCWC | 1 cut(s) | 158 |
| Alw26I | GTCTC | 1 cut(s) | 632 |
| AlwI | GGATC | 1 cut(s) | 1059 |
| AoxI | GGCC | 3 cut(s) | 243, 313, 477 |
| ApeKI | GCWGC | 9 cut(s) | 203, 206, 341, 390, 416, 586, 859, 1112, 1421 |
| ApoI | RAATTY | 5 cut(s) | 185, 485, 659, 1034, 1355 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1083, 1334 |
| AspLEI | GCGC | 4 cut(s) | 355, 390, 591, 792 |
| AspS9I | GGNCC | 6 cut(s) | 134, 478, 646, 836, 907, 1168 |
| AsuHPI | GGTGA | 1 cut(s) | 641 |
| AsuII | TTCGAA | 1 cut(s) | 1291 |
| AsuNHI | GCTAGC | 1 cut(s) | 355 |
| AvaII | GGWCC | 5 cut(s) | 134, 646, 836, 907, 1168 |
| Bbv12I | GWGCWC | 1 cut(s) | 158 |
| BbvI | GCAGC | 9 cut(s) | 215, 218, 328, 377, 403, 573, 871, 1124, 1433 |
| BccI | CCATC | 4 cut(s) | 35, 177, 293, 552 |
| BceAI | ACGGC | 1 cut(s) | 52 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1101, 1135 |
| BciT130I | CCWGG | 2 cut(s) | 317, 651 |
| BcoDI | GTCTC | 1 cut(s) | 632 |
| BfaI | CTAG | 3 cut(s) | 356, 1439, 1447 |
| BfmI | CTRYAG | 1 cut(s) | 391 |
| BfuAI | ACCTGC | 1 cut(s) | 614 |
| BisI | GCNGC | 9 cut(s) | 204, 207, 342, 391, 417, 587, 860, 1113, 1422 |
| BlpI | GCTNAGC | 1 cut(s) | 863 |
| BlsI | GCNGC | 9 cut(s) | 205, 208, 343, 392, 418, 588, 861, 1114, 1423 |
| BmcAI | AGTACT | 1 cut(s) | 1148 |
| Bme1390I | CCNGG | 2 cut(s) | 317, 651 |
| Bme18I | GGWCC | 5 cut(s) | 134, 646, 836, 907, 1168 |
| BmgBI | CACGTC | 1 cut(s) | 824 |
| BmgT120I | GGNCC | 6 cut(s) | 134, 478, 646, 836, 907, 1168 |
| BmiI | GGNNCC | 3 cut(s) | 135, 648, 1170 |
| BmrFI | CCNGG | 2 cut(s) | 317, 651 |
| BmsI | GCATC | 2 cut(s) | 1255, 1277 |
| BmtI | GCTAGC | 1 cut(s) | 359 |
| BoxI | GACNNNNGTC | 2 cut(s) | 402, 644 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 863 |
| Bpu14I | TTCGAA | 1 cut(s) | 1291 |
| BpuEI | CTTGAG | 1 cut(s) | 601 |
| BsaJI | CCNNGG | 3 cut(s) | 474, 649, 1164 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1410, 1440 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 550, 655, 799 |
| Bse1I | ACTGG | 1 cut(s) | 839 |
| BseBI | CCWGG | 2 cut(s) | 317, 651 |
| BseDI | CCNNGG | 3 cut(s) | 474, 649, 1164 |
| BseGI | GGATG | 6 cut(s) | 463, 540, 979, 1158, 1270, 1287 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 550, 655, 799 |
| BseMII | CTCAG | 4 cut(s) | 87, 152, 425, 877 |
| BseNI | ACTGG | 1 cut(s) | 839 |
| BseRI | GAGGAG | 2 cut(s) | 581, 917 |
| BseXI | GCAGC | 9 cut(s) | 215, 218, 328, 377, 403, 573, 871, 1124, 1433 |
| BsgI | GTGCAG | 1 cut(s) | 708 |
| BshFI | GGCC | 3 cut(s) | 245, 315, 479 |
| BsiHKAI | GWGCWC | 1 cut(s) | 158 |
| BsiWI | CGTACG | 1 cut(s) | 990 |
| BslFI | GGGAC | 2 cut(s) | 147, 632 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 550, 655, 799 |
| BsmAI | GTCTC | 1 cut(s) | 632 |
| BsmFI | GGGAC | 2 cut(s) | 147, 632 |
| BsmI | GAATGC | 2 cut(s) | 205, 418 |
| BsnI | GGCC | 3 cut(s) | 245, 315, 479 |
| Bsp119I | TTCGAA | 1 cut(s) | 1291 |
| Bsp1286I | GDGCHC | 1 cut(s) | 158 |
| Bsp143I | GATC | 4 cut(s) | 10, 781, 927, 1051 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 863 |
| BspACI | CCGC | 2 cut(s) | 102, 147 |
| BspANI | GGCC | 3 cut(s) | 245, 315, 479 |
| BspCNI | CTCAG | 4 cut(s) | 88, 151, 426, 876 |
| BspHI | TCATGA | 1 cut(s) | 1195 |
| BspLI | GGNNCC | 3 cut(s) | 135, 648, 1170 |
| BspMAI | CTGCAG | 1 cut(s) | 395 |
| BspMI | ACCTGC | 1 cut(s) | 614 |
| BspOI | GCTAGC | 1 cut(s) | 359 |
| BspPI | GGATC | 1 cut(s) | 1059 |
| BspQI | GCTCTTC | 1 cut(s) | 146 |
| BspT104I | TTCGAA | 1 cut(s) | 1291 |
| BsrI | ACTGG | 1 cut(s) | 839 |
| BssECI | CCNNGG | 3 cut(s) | 474, 649, 1164 |
| BssMI | GATC | 4 cut(s) | 10, 781, 927, 1051 |
| BssT1I | CCWWGG | 2 cut(s) | 474, 1164 |
| Bst2UI | CCWGG | 2 cut(s) | 317, 651 |
| Bst4CI | ACNGT | 6 cut(s) | 17, 442, 643, 748, 1242, 1346 |
| Bst6I | CTCTTC | 1 cut(s) | 146 |
| BstBI | TTCGAA | 1 cut(s) | 1291 |
| BstC8I | GCNNGC | 6 cut(s) | 93, 243, 357, 621, 1001, 1311 |
| BstDEI | CTNAG | 5 cut(s) | 96, 138, 434, 863, 1150 |
| BstF5I | GGATG | 6 cut(s) | 463, 540, 979, 1158, 1270, 1287 |
| BstHHI | GCGC | 4 cut(s) | 355, 390, 591, 792 |
| BstKTI | GATC | 4 cut(s) | 13, 784, 930, 1054 |
| BstMAI | GTCTC | 1 cut(s) | 632 |
| BstMBI | GATC | 4 cut(s) | 10, 781, 927, 1051 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 153, 300, 350 |
| BstNI | CCWGG | 2 cut(s) | 317, 651 |
| BstNSI | RCATGY | 2 cut(s) | 1003, 1313 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 402, 644 |
| BstSCI | CCNGG | 2 cut(s) | 315, 649 |
| BstSFI | CTRYAG | 1 cut(s) | 391 |
| BstV1I | GCAGC | 9 cut(s) | 215, 218, 328, 377, 403, 573, 871, 1124, 1433 |
| BsuRI | GGCC | 3 cut(s) | 245, 315, 479 |
| BtgZI | GCGATG | 1 cut(s) | 54 |
| BtrI | CACGTC | 1 cut(s) | 824 |
| BtsCI | GGATG | 6 cut(s) | 463, 540, 979, 1158, 1270, 1287 |
| BtsI | GCAGTG | 1 cut(s) | 400 |
| BtsIMutI | CAGTG | 2 cut(s) | 22, 400 |
| BveI | ACCTGC | 1 cut(s) | 614 |
| Cac8I | GCNNGC | 6 cut(s) | 93, 243, 357, 621, 1001, 1311 |
| CciI | TCATGA | 1 cut(s) | 1195 |
| CfoI | GCGC | 4 cut(s) | 355, 390, 591, 792 |
| Cfr13I | GGNCC | 6 cut(s) | 134, 478, 646, 836, 907, 1168 |
| CseI | GACGC | 1 cut(s) | 1373 |
| Csp6I | GTAC | 4 cut(s) | 842, 991, 1020, 1147 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 665, 700 |
| CviAII | CATG | 5 cut(s) | 1000, 1196, 1223, 1310, 1339 |
| CviQI | GTAC | 4 cut(s) | 842, 991, 1020, 1147 |
| DdeI | CTNAG | 5 cut(s) | 96, 138, 434, 863, 1150 |
| DpnI | GATC | 4 cut(s) | 12, 783, 929, 1053 |
| DpnII | GATC | 4 cut(s) | 10, 781, 927, 1051 |
| DraI | TTTAAA | 1 cut(s) | 1039 |
| EaeI | YGGCCR | 1 cut(s) | 243 |
| Eam1104I | CTCTTC | 1 cut(s) | 146 |
| EarI | CTCTTC | 1 cut(s) | 146 |
| Eco130I | CCWWGG | 2 cut(s) | 474, 1164 |
| Eco47I | GGWCC | 5 cut(s) | 134, 646, 836, 907, 1168 |
| Eco57I | CTGAAG | 2 cut(s) | 1128, 1349 |
| EcoO109I | RGGNCCY | 2 cut(s) | 134, 1168 |
| EcoRII | CCWGG | 2 cut(s) | 315, 649 |
| EcoT14I | CCWWGG | 2 cut(s) | 474, 1164 |
| EcoT22I | ATGCAT | 1 cut(s) | 1270 |
| ErhI | CCWWGG | 2 cut(s) | 474, 1164 |
| FaeI | CATG | 5 cut(s) | 1003, 1199, 1226, 1313, 1342 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 75, 107, 603, 635 |
| FaqI | GGGAC | 2 cut(s) | 147, 632 |
| FatI | CATG | 5 cut(s) | 999, 1195, 1222, 1309, 1338 |
| FauI | CCCGC | 1 cut(s) | 140 |
| Fnu4HI | GCNGC | 9 cut(s) | 204, 207, 342, 391, 417, 587, 860, 1113, 1422 |
| FokI | GGATG | 6 cut(s) | 470, 527, 986, 1145, 1277, 1294 |
| Fsp4HI | GCNGC | 9 cut(s) | 204, 207, 342, 391, 417, 587, 860, 1113, 1422 |
| FspBI | CTAG | 3 cut(s) | 356, 1439, 1447 |
| GlaI | GCGC | 4 cut(s) | 354, 389, 590, 791 |
| GluI | GCNGC | 9 cut(s) | 204, 207, 342, 391, 417, 587, 860, 1113, 1422 |
| HaeIII | GGCC | 3 cut(s) | 245, 315, 479 |
| HgaI | GACGC | 1 cut(s) | 1373 |
| HhaI | GCGC | 4 cut(s) | 355, 390, 591, 792 |
| Hin1II | CATG | 5 cut(s) | 1003, 1199, 1226, 1313, 1342 |
| Hin6I | GCGC | 4 cut(s) | 353, 388, 589, 790 |
| HinP1I | GCGC | 4 cut(s) | 353, 388, 589, 790 |
| HincII | GTYRAC | 1 cut(s) | 1060 |
| HindII | GTYRAC | 1 cut(s) | 1060 |
| HindIII | AAGCTT | 1 cut(s) | 89 |
| HinfI | GANTC | 4 cut(s) | 105, 495, 715, 1192 |
| HpaI | GTTAAC | 1 cut(s) | 1060 |
| HphI | GGTGA | 1 cut(s) | 641 |
| Hpy166II | GTNNAC | 3 cut(s) | 674, 982, 1060 |
| Hpy188I | TCNGA | 6 cut(s) | 141, 367, 468, 549, 892, 1123 |
| Hpy188III | TCNNGA | 8 cut(s) | 65, 271, 407, 800, 931, 1196, 1327, 1439 |
| Hpy8I | GTNNAC | 3 cut(s) | 674, 982, 1060 |
| Hpy99I | CGWCG | 2 cut(s) | 38, 1020 |
| HpyAV | CCTTC | 3 cut(s) | 73, 605, 812 |
| HpyCH4III | ACNGT | 6 cut(s) | 17, 442, 643, 748, 1242, 1346 |
| HpyCH4IV | ACGT | 2 cut(s) | 823, 943 |
| HpyCH4V | TGCA | 8 cut(s) | 203, 326, 393, 623, 725, 1268, 1309, 1313 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 153, 300, 350 |
| HpyF3I | CTNAG | 5 cut(s) | 96, 138, 434, 863, 1150 |
| HpySE526I | ACGT | 2 cut(s) | 823, 943 |
| Hsp92II | CATG | 5 cut(s) | 1003, 1199, 1226, 1313, 1342 |
| HspAI | GCGC | 4 cut(s) | 353, 388, 589, 790 |
| KspAI | GTTAAC | 1 cut(s) | 1060 |
| Kzo9I | GATC | 4 cut(s) | 10, 781, 927, 1051 |
| LguI | GCTCTTC | 1 cut(s) | 146 |
| LmnI | GCTCC | 1 cut(s) | 1418 |
| Lsp1109I | GCAGC | 9 cut(s) | 215, 218, 328, 377, 403, 573, 871, 1124, 1433 |
| LweI | GCATC | 2 cut(s) | 1255, 1277 |
| MaeI | CTAG | 3 cut(s) | 356, 1439, 1447 |
| MaeII | ACGT | 2 cut(s) | 823, 943 |
| MaeIII | GTNAC | 2 cut(s) | 395, 1295 |
| MalI | GATC | 4 cut(s) | 12, 783, 929, 1053 |
| MboI | GATC | 4 cut(s) | 10, 781, 927, 1051 |
| MboII | GAAGA | 4 cut(s) | 163, 225, 710, 1088 |
| MhlI | GDGCHC | 1 cut(s) | 158 |
| Mph1103I | ATGCAT | 1 cut(s) | 1270 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1083, 1334 |
| MseI | TTAA | 5 cut(s) | 261, 561, 1038, 1059, 1257 |
| MslI | CAYNNNNRTG | 2 cut(s) | 374, 1280 |
| MspA1I | CMGCKG | 1 cut(s) | 1424 |
| MspR9I | CCNGG | 2 cut(s) | 317, 651 |
| Mva1269I | GAATGC | 2 cut(s) | 205, 418 |
| MvaI | CCWGG | 2 cut(s) | 317, 651 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 153, 300, 350 |
| NdeII | GATC | 4 cut(s) | 10, 781, 927, 1051 |
| NheI | GCTAGC | 1 cut(s) | 355 |
| NlaIII | CATG | 5 cut(s) | 1003, 1199, 1226, 1313, 1342 |
| NlaIV | GGNNCC | 3 cut(s) | 135, 648, 1170 |
| NmeAIII | GCCGAG | 1 cut(s) | 271 |
| NmuCI | GTSAC | 2 cut(s) | 395, 1295 |
| NsiI | ATGCAT | 1 cut(s) | 1270 |
| NspI | RCATGY | 2 cut(s) | 1003, 1313 |
| NspV | TTCGAA | 1 cut(s) | 1291 |
| PaeI | GCATGC | 2 cut(s) | 1003, 1313 |
| PagI | TCATGA | 1 cut(s) | 1195 |
| PaqCI | CACCTGC | 1 cut(s) | 614 |
| PciSI | GCTCTTC | 1 cut(s) | 146 |
| PctI | GAATGC | 2 cut(s) | 205, 418 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1083, 1334 |
| PfeI | GAWTC | 4 cut(s) | 105, 495, 715, 1192 |
| Pfl23II | CGTACG | 1 cut(s) | 990 |
| PkrI | GCNGC | 9 cut(s) | 205, 208, 343, 392, 418, 588, 861, 1114, 1423 |
| PpuMI | RGGWCCY | 2 cut(s) | 134, 1168 |
| PshAI | GACNNNNGTC | 2 cut(s) | 402, 644 |
| PsiI | TTATAA | 1 cut(s) | 1236 |
| Psp5II | RGGWCCY | 2 cut(s) | 134, 1168 |
| Psp6I | CCWGG | 2 cut(s) | 315, 649 |
| PspGI | CCWGG | 2 cut(s) | 315, 649 |
| PspLI | CGTACG | 1 cut(s) | 990 |
| PspN4I | GGNNCC | 3 cut(s) | 135, 648, 1170 |
| PspPI | GGNCC | 6 cut(s) | 134, 478, 646, 836, 907, 1168 |
| PspPPI | RGGWCCY | 2 cut(s) | 134, 1168 |
| PstI | CTGCAG | 1 cut(s) | 395 |
| PvuII | CAGCTG | 1 cut(s) | 1424 |
| RsaI | GTAC | 4 cut(s) | 843, 992, 1021, 1148 |
| RsaNI | GTAC | 4 cut(s) | 842, 991, 1020, 1147 |
| RseI | CAYNNNNRTG | 2 cut(s) | 374, 1280 |
| SapI | GCTCTTC | 1 cut(s) | 146 |
| SaqAI | TTAA | 5 cut(s) | 261, 561, 1038, 1059, 1257 |
| SatI | GCNGC | 9 cut(s) | 204, 207, 342, 391, 417, 587, 860, 1113, 1422 |
| Sau3AI | GATC | 4 cut(s) | 10, 781, 927, 1051 |
| Sau96I | GGNCC | 6 cut(s) | 134, 478, 646, 836, 907, 1168 |
| ScaI | AGTACT | 1 cut(s) | 1148 |
| ScrFI | CCNGG | 2 cut(s) | 317, 651 |
| SduI | GDGCHC | 1 cut(s) | 158 |
| SfaNI | GCATC | 2 cut(s) | 1255, 1277 |
| SfcI | CTRYAG | 1 cut(s) | 391 |
| SfuI | TTCGAA | 1 cut(s) | 1291 |
| SinI | GGWCC | 5 cut(s) | 134, 646, 836, 907, 1168 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 374, 1280 |
| SmlI | CTYRAG | 1 cut(s) | 580 |
| SmoI | CTYRAG | 1 cut(s) | 580 |
| SphI | GCATGC | 2 cut(s) | 1003, 1313 |
| SsiI | CCGC | 2 cut(s) | 102, 147 |
| SspMI | CTAG | 3 cut(s) | 356, 1439, 1447 |
| StyD4I | CCNGG | 2 cut(s) | 315, 649 |
| StyI | CCWWGG | 2 cut(s) | 474, 1164 |
| TaaI | ACNGT | 6 cut(s) | 17, 442, 643, 748, 1242, 1346 |
| TaiI | ACGT | 2 cut(s) | 826, 946 |
| TaqI | TCGA | 5 cut(s) | 33, 406, 498, 1005, 1291 |
| TatI | WGTACW | 2 cut(s) | 841, 1146 |
| TfiI | GAWTC | 4 cut(s) | 105, 495, 715, 1192 |
| Tru1I | TTAA | 5 cut(s) | 261, 561, 1038, 1059, 1257 |
| Tru9I | TTAA | 5 cut(s) | 261, 561, 1038, 1059, 1257 |
| TscAI | CASTG | 2 cut(s) | 22, 400 |
| TseFI | GTSAC | 2 cut(s) | 395, 1295 |
| TseI | GCWGC | 9 cut(s) | 203, 206, 341, 390, 416, 586, 859, 1112, 1421 |
| Tsp45I | GTSAC | 2 cut(s) | 395, 1295 |
| TspDTI | ATGAA | 8 cut(s) | 212, 474, 1044, 1184, 1208, 1220, 1298, 1327 |
| TspGWI | ACGGA | 1 cut(s) | 1004 |
| TspRI | CASTG | 2 cut(s) | 22, 400 |
| VpaK11BI | GGWCC | 5 cut(s) | 134, 646, 836, 907, 1168 |
| XapI | RAATTY | 5 cut(s) | 185, 485, 659, 1034, 1355 |
| XbaI | TCTAGA | 1 cut(s) | 1438 |
| XceI | RCATGY | 2 cut(s) | 1003, 1313 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1083, 1334 |
| XspI | CTAG | 3 cut(s) | 356, 1439, 1447 |
| ZrmI | AGTACT | 1 cut(s) | 1148 |
| Zsp2I | ATGCAT | 1 cut(s) | 1270 |