RchiOBHm_Chr7g0226141

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000525
Physical Location & Seq
Forward (+)
49219564 .. 49221503
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20254

Sequence Viewer

Length: 663 bp
ATGGAGAAAGATTACTGCGTCACGCAACTCATCGATGGCCGTGGTGAATTCAATGCTTCTGGGATCGACATCTTCACAAAGGATGTCAACTTTGCTGCGTGTGGAGAATCTTATGCCATCGTTGCCGTCATGGGTCCTCAGAGCAGTGGGAAGAGCACTTTGATGAACCATCTTTTTCACACCGACTTCAAGGAGATGGATGGCAGAGCCGGAAGGAACCAAACAACATTGGGCATTTGGATAGCCAAGTGCGTTGGCATTGAGCCTTTCACTATCGCCGTCGATTTGGAGGGCAGTGACGGCAGAGAGAGGGGCTCGCATGATACTGCATTCGAGAAACAAAGTGCTCTATTTGCGCTGGCAATTTCAGACATTTTGTTGATAAATATGTGGTGCATTGAAATCGGACGGGAGCAAGCTGCAAATAAACCTTTACTAAGAACAGTTTTTCAGGTTATGATGAGCTTATTTGGTCCCGGCCGAAAGAAGACGTTACTTTTTGTTGTACGTGATAAAATTCCAGAGACCCCGTTAGAAAGATTGGAAGCTACTTTACTGACAGATATTAATAAGGTAATTACTACGTCTTCAACAGCACTTGCTAGTGACGTAAATTTTTTTTTTTTTTTAGTTTGTTTATATTTTTTTTTTGAAAGACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

220

Amino Acids

24.55

Weight (kDa)

5.28

Isoelectric Point (pI)

26.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
URGCP_GTPase PF25683 39 - 170 6.7e-10 URGCP-like GTPase domain
RHD3_GTPase PF05879 44 - 195 3.4e-65 Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 2 cut(s) 37, 478
AcsI RAATTY 3 cut(s) 47, 516, 613
AfaI GTAC 1 cut(s) 507
AgsI TTSAA 5 cut(s) 52, 190, 401, 591, 653
AluBI AGCT 3 cut(s) 419, 465, 548
AluI AGCT 3 cut(s) 419, 465, 548
Alw21I GWGCWC 2 cut(s) 158, 349
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 1 cut(s) 71
AoxI GGCC 2 cut(s) 37, 478
ApeKI GCWGC 2 cut(s) 95, 419
ApoI RAATTY 3 cut(s) 47, 516, 613
AseI ATTAAT 1 cut(s) 567
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 2 cut(s) 134, 473
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 2 cut(s) 134, 473
BanII GRGCYC 1 cut(s) 317
BarI GAAGNNNNNNTAC 2 cut(s) 537, 569
BbsI GAAGAC 2 cut(s) 494, 579
Bbv12I GWGCWC 2 cut(s) 158, 349
BbvI GCAGC 2 cut(s) 82, 406
BccI CCATC 5 cut(s) 29, 125, 177, 190, 194
BceAI ACGGC 4 cut(s) 24, 110, 263, 316
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 1 cut(s) 603
BisI GCNGC 2 cut(s) 96, 420
BlsI GCNGC 2 cut(s) 97, 421
Bme1390I CCNGG 1 cut(s) 477
Bme18I GGWCC 2 cut(s) 134, 473
BmgT120I GGNCC 2 cut(s) 134, 473
BmiI GGNNCC 3 cut(s) 135, 218, 475
BmrFI CCNGG 1 cut(s) 477
BpiI GAAGAC 2 cut(s) 494, 579
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpuMI CCSGG 1 cut(s) 477
Bsa29I ATCGAT 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 68
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 40
Bse8I GATNNNNATC 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 88, 205
BseJI GATNNNNATC 1 cut(s) 68
BseMII CTCAG 1 cut(s) 152
BseX3I CGGCCG 1 cut(s) 478
BseXI GCAGC 2 cut(s) 82, 406
Bsh1285I CGRYCG 1 cut(s) 481
BshFI GGCC 2 cut(s) 39, 480
BshVI ATCGAT 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 481
BsiHKAI GWGCWC 2 cut(s) 158, 349
BsiSI CCGG 2 cut(s) 210, 477
BslFI GGGAC 1 cut(s) 459
BsmAI GTCTC 1 cut(s) 518
BsmFI GGGAC 1 cut(s) 459
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 2 cut(s) 39, 480
Bso31I GGTCTC 1 cut(s) 518
Bsp1286I GDGCHC 3 cut(s) 158, 317, 349
Bsp143I GATC 1 cut(s) 63
BspANI GGCC 2 cut(s) 39, 480
BspCNI CTCAG 1 cut(s) 151
BspDI ATCGAT 1 cut(s) 33
BspLI GGNNCC 3 cut(s) 135, 218, 475
BspPI GGATC 1 cut(s) 71
BspQI GCTCTTC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 518
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 509
BstC8I GCNNGC 3 cut(s) 317, 360, 417
BstDEI CTNAG 2 cut(s) 138, 437
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 2 cut(s) 88, 205
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 1 cut(s) 63
BstMCI CGRYCG 1 cut(s) 481
BstMWI GCNNNNNNNGC 3 cut(s) 122, 300, 353
BstSCI CCNGG 1 cut(s) 475
BstV1I GCAGC 2 cut(s) 82, 406
BstV2I GAAGAC 2 cut(s) 494, 579
BstZI CGGCCG 1 cut(s) 478
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 2 cut(s) 39, 480
BsuTUI ATCGAT 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 40
BtsCI GGATG 2 cut(s) 88, 205
BtsI GCAGTG 2 cut(s) 151, 301
BtsIMutI CAGTG 2 cut(s) 151, 301
Cac8I GCNNGC 3 cut(s) 317, 360, 417
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 2 cut(s) 134, 473
ClaI ATCGAT 1 cut(s) 33
CseI GACGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 506
CviAII CATG 2 cut(s) 130, 320
CviJI RGCY 9 cut(s) 39, 209, 245, 265, 315, 419, 465, 480, 548
CviKI_1 RGCY 9 cut(s) 39, 209, 245, 265, 315, 419, 465, 480, 548
CviQI GTAC 1 cut(s) 506
DdeI CTNAG 2 cut(s) 138, 437
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
EaeI YGGCCR 2 cut(s) 37, 478
EagI CGGCCG 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EclXI CGGCCG 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 518
Eco47I GGWCC 2 cut(s) 134, 473
Eco52I CGGCCG 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 317
FaeI CATG 2 cut(s) 133, 323
FaiI YATR 6 cut(s) 114, 131, 321, 389, 458, 640
FaqI GGGAC 1 cut(s) 459
FatI CATG 2 cut(s) 129, 319
Fnu4HI GCNGC 2 cut(s) 96, 420
FokI GGATG 2 cut(s) 95, 212
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 2 cut(s) 96, 420
FspBI CTAG 1 cut(s) 603
GlaI GCGC 1 cut(s) 357
GluI GCNGC 2 cut(s) 96, 420
HaeIII GGCC 2 cut(s) 39, 480
HapII CCGG 2 cut(s) 210, 477
HgaI GACGC 1 cut(s) 7
HhaI GCGC 1 cut(s) 358
Hin1II CATG 2 cut(s) 133, 323
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 107
HpaII CCGG 2 cut(s) 210, 477
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 3 cut(s) 141, 370, 407
Hpy188III TCNNGA 2 cut(s) 334, 521
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 4 cut(s) 491, 508, 584, 609
HpyCH4V TGCA 3 cut(s) 329, 396, 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 300, 353
HpyF3I CTNAG 2 cut(s) 138, 437
HpySE526I ACGT 4 cut(s) 491, 508, 584, 609
Hsp92II CATG 2 cut(s) 133, 323
HspAI GCGC 1 cut(s) 356
Kzo9I GATC 1 cut(s) 63
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 412
LpnPI CCDG 6 cut(s) 45, 223, 344, 437, 490, 534
Lsp1109I GCAGC 2 cut(s) 82, 406
MaeI CTAG 1 cut(s) 603
MaeII ACGT 4 cut(s) 491, 508, 584, 609
MaeIII GTNAC 4 cut(s) 19, 296, 492, 605
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 4 cut(s) 64, 163, 499, 579
MhlI GDGCHC 3 cut(s) 158, 317, 349
MluCI AATT 5 cut(s) 47, 363, 516, 576, 613
MnlI CCTC 3 cut(s) 147, 283, 303
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 2 cut(s) 210, 477
MspR9I CCNGG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 329
MwoI GCNNNNNNNGC 3 cut(s) 122, 300, 353
NciI CCSGG 1 cut(s) 477
NdeII GATC 1 cut(s) 63
NlaIII CATG 2 cut(s) 133, 323
NlaIV GGNNCC 3 cut(s) 135, 218, 475
NmuCI GTSAC 3 cut(s) 19, 296, 605
PciSI GCTCTTC 1 cut(s) 146
PctI GAATGC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 97, 421
Ppu21I YACGTR 1 cut(s) 509
PpuMI RGGWCCY 1 cut(s) 134
PshBI ATTAAT 1 cut(s) 567
Psp5II RGGWCCY 1 cut(s) 134
PspN4I GGNNCC 3 cut(s) 135, 218, 475
PspPI GGNCC 2 cut(s) 134, 473
PspPPI RGGWCCY 1 cut(s) 134
RsaI GTAC 1 cut(s) 507
RsaNI GTAC 1 cut(s) 506
RseI CAYNNNNRTG 1 cut(s) 161
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 2 cut(s) 96, 420
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 2 cut(s) 134, 473
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 3 cut(s) 158, 317, 349
SinI GGWCC 2 cut(s) 134, 473
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 5 cut(s) 47, 363, 516, 576, 613
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 1 cut(s) 475
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 4 cut(s) 494, 511, 587, 612
TaqI TCGA 4 cut(s) 33, 66, 282, 333
TasI AATT 5 cut(s) 47, 363, 516, 576, 613
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 2 cut(s) 151, 301
TseFI GTSAC 3 cut(s) 19, 296, 605
TseI GCWGC 2 cut(s) 95, 419
Tsp45I GTSAC 3 cut(s) 19, 296, 605
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 2 cut(s) 151, 301
VpaK11BI GGWCC 2 cut(s) 134, 473
VspI ATTAAT 1 cut(s) 567
XapI RAATTY 3 cut(s) 47, 516, 613
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.