MD05G1180600.v1.1

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000525
Physical Location & Seq
Reverse (-)
30811176 .. 30814206
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1180600.v1.1.491

Sequence Viewer

Length: 144 bp
ATGAAGACATTAGGGTCTCTGAAGCTTTTGTCGACCATGGCTGCCATTCGCCTGGATGAGAAGCCAGATAATATTGAAAATGGCCTCGTTTCTTCTCTCGTGGACGGGACTGTTAGTTTTCATCTTCACAAAATAGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

48

Amino Acids

5.06

Weight (kDa)

6.7

Isoelectric Point (pI)

21.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 41
AgsI TTSAA 1 cut(s) 77
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 21
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 41
BauI CACGAG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 1 cut(s) 142
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 1 cut(s) 84
BslFI GGGAC 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 1 cut(s) 84
Bso31I GGTCTC 1 cut(s) 21
Bsp19I CCATGG 1 cut(s) 36
BspANI GGCC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 36
BssSI CACGAG 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 52
BsuRI GGCC 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 61
CviAII CATG 1 cut(s) 37
CviJI RGCY 4 cut(s) 25, 41, 64, 84
CviKI_1 RGCY 4 cut(s) 25, 41, 64, 84
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 40
FaiI YATR 1 cut(s) 38
FaqI GGGAC 1 cut(s) 121
FatI CATG 1 cut(s) 36
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 142
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 84
Hin1II CATG 1 cut(s) 40
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HindIII AAGCTT 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 33, 103
Hpy188I TCNGA 1 cut(s) 21
Hpy8I GTNNAC 2 cut(s) 33, 103
HpyCH4III ACNGT 1 cut(s) 112
Hsp92II CATG 1 cut(s) 40
LpnPI CCDG 3 cut(s) 38, 65, 78
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 142
MboII GAAGA 3 cut(s) 16, 84, 116
MnlI CCTC 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
NcoI CCATGG 1 cut(s) 36
NlaIII CATG 1 cut(s) 40
PkrI GCNGC 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
SalI GTCGAC 1 cut(s) 31
SatI GCNGC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 53
SetI ASST 1 cut(s) 27
SgeI CNNG 8 cut(s) 49, 64, 65, 77, 98, 110, 112, 118
SspI AATATT 1 cut(s) 73
SspMI CTAG 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 32
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 17, 110
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.