Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000525

Physical Location & Seq

Genomic Coordinates Forward (+)

60433405 .. 60438064

Gene Structure 4660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGATGCACTACACGGTGGTGAGCACCACCGACGCCATCGGCAAGCTCAACGAGGTCGAGATCGAGTTTGGCGAGGTCTTGTACCCCGGCCTCGCAAAGGAAGCCAACAAGCGTAATAACAATTGGCTACCACCTCCTTGGGCTATTCTTGCCTTGGTTGTCCTCGGATTTAATGAATTCATGAATCATGATAGTCTTAAGGAAGGAAGGAGCAGCTCCCTCGTCTCACCCAAAATTAACACCTTAAGGAAGGAAGGAGCAGTGGGAGATGATGCATCGACGGTGCTTCGGTCGCCGGAAGCCGGTGCTGCGGATAGGTCGGATATGCACAGCCTCTTCTTGACAGGTAATAGGTTTCCGAGTCCAATTCCCGACTTAATCTTTGGTTTGCAGAGCTTGGATGTTGTCTTTCCGGTCTTAACAAAGCCGAGTGGAAGCACGGTGACGAGCAAACGTAGTGAGCATGGAGAAGATAGCATTCGATTTGAAAGTGTTGGAGTTGAAGCAGGAGTCCAGCAAGGCGTACGAGACCCTCCATTCCCAAACGTCTTCCTTGCTCACAAGGAGAGGGAGTGTAGTTTGATCGAAAGACGGATTCAAGAGCGTGCAAAGAAACCGAGTTGGGTTGAGAGAAGAACTGAAGAGAAATTGAATGAGGTTGAGTCTAAGGAGAGGGAACCGAAGAAGTACCGTGAGGATGCTAAGTTGAAAGTGGAGCAACTAAGTGTGATTGATGGGGCAATTGTGGAGCGCAACGAAATCATTGAGTCAAAAGAAGAGGAAATTAAAGCAACAAGCAGATGTCAATCGAAGAATAAGGAGCTTCAAAGTCTTCTTGATACAGAATTATCACGGGCCCTTGCTACCACAGATGAGGCACATGGTGATCAATGGATTGACTTGGCGGACGTTGGTGAATCGTTGATTGAGCTGCTAAGAAGACGCAGCGGGATTAGAGGGTTCGAGGACAAGGATGTCCGAAGTTCGACGGTTAAGGATAACCGTGATGTTTGTGTTCGAGGACGGGGATGTCCGAAGTTCGACGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

349

Amino Acids

39.1

Weight (kDa)

5.53

Isoelectric Point (pI)

63.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sey1_3HB	PF20428	35 - 61	9e-08	Sey1 three-helix bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45160
fragaria_vesca	FvH4_3g11890
malus_domestica	MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica	Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis	pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis	RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata	RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora	Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii	Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa	Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha	Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana	Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	974, 1029
AciI	CCGC	3 cut(s)	311, 905, 948
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	660
AcyI	GRCGYC	1 cut(s)	33
AdeI	CACNNNGTG	1 cut(s)	884
AfaI	GTAC	3 cut(s)	83, 525, 689
AfiI	CCNNNNNNNGG	2 cut(s)	97, 302
AflII	CTTAAG	2 cut(s)	197, 244
AgsI	TTSAA	6 cut(s)	488, 503, 599, 652, 709, 827
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	5 cut(s)	46, 216, 396, 823, 931
AluI	AGCT	5 cut(s)	46, 216, 396, 823, 931
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	229, 522
AoxI	GGCC	2 cut(s)	88, 855
ApaI	GGGCCC	1 cut(s)	859
ApeKI	GCWGC	4 cut(s)	213, 308, 931, 945
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AspLEI	GCGC	1 cut(s)	753
AspS9I	GGNCC	2 cut(s)	855, 856
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	5 cut(s)	31, 219, 454, 896, 926
BaeGI	GKGCMC	1 cut(s)	859
BanII	GRGCYC	1 cut(s)	859
BbsI	GAAGAC	3 cut(s)	541, 824, 946
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	4 cut(s)	225, 295, 918, 957
BccI	CCATC	2 cut(s)	44, 728
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BclI	TGATCA	1 cut(s)	886
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	229, 522
BfrI	CTTAAG	2 cut(s)	197, 244
BisI	GCNGC	4 cut(s)	214, 309, 932, 946
BlsI	GCNGC	4 cut(s)	215, 310, 933, 947
Bme1390I	CCNGG	1 cut(s)	87
BmgT120I	GGNCC	2 cut(s)	855, 856
BmiI	GGNNCC	2 cut(s)	678, 857
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	3 cut(s)	262, 284, 688
BpiI	GAAGAC	3 cut(s)	541, 824, 946
BpuMI	CCSGG	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	805
BsaHI	GRCGYC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	522
BsaJI	CCNNGG	4 cut(s)	85, 137, 153, 163
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 302
Bse118I	RCCGGY	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	805
BseDI	CCNNGG	4 cut(s)	85, 137, 153, 163
BseGI	GGATG	4 cut(s)	406, 703, 979, 1034
BseJI	GATNNNNATC	1 cut(s)	805
BseLI	CCNNNNNNNGG	2 cut(s)	97, 302
BseSI	GKGCMC	1 cut(s)	859
BseXI	GCAGC	4 cut(s)	225, 295, 918, 957
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	2 cut(s)	90, 857
BsiEI	CGRYCG	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	4 cut(s)	87, 296, 303, 413
BsiWI	CGTACG	1 cut(s)	523
BslI	CCNNNNNNNGG	2 cut(s)	97, 302
BsmAI	GTCTC	2 cut(s)	229, 522
BsmBI	CGTCTC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	2 cut(s)	90, 857
Bso31I	GGTCTC	1 cut(s)	522
Bsp120I	GGGCCC	1 cut(s)	855
Bsp1286I	GDGCHC	2 cut(s)	26, 859
Bsp143I	GATC	3 cut(s)	60, 582, 886
BspACI	CCGC	3 cut(s)	311, 905, 948
BspANI	GGCC	2 cut(s)	90, 857
BspHI	TCATGA	2 cut(s)	180, 187
BspLI	GGNNCC	2 cut(s)	678, 857
BspTI	CTTAAG	2 cut(s)	197, 244
BspTNI	GGTCTC	1 cut(s)	522
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	4 cut(s)	85, 137, 153, 163
BssMI	GATC	3 cut(s)	60, 582, 886
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	137, 153
Bst4CI	ACNGT	7 cut(s)	16, 283, 442, 692, 991, 1004, 1046
Bst6I	CTCTTC	3 cut(s)	341, 636, 771
BstACI	GRCGYC	1 cut(s)	33
BstAFI	CTTAAG	2 cut(s)	197, 244
BstC8I	GCNNGC	2 cut(s)	44, 606
BstDEI	CTNAG	4 cut(s)	666, 702, 722, 935
BstENI	CCTNNNNNAGG	1 cut(s)	95
BstF5I	GGATG	4 cut(s)	406, 703, 979, 1034
BstHHI	GCGC	1 cut(s)	753
BstKTI	GATC	3 cut(s)	63, 585, 889
BstMAI	GTCTC	2 cut(s)	229, 522
BstMBI	GATC	3 cut(s)	60, 582, 886
BstMCI	CGRYCG	1 cut(s)	293
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 149, 292, 308
BstSCI	CCNGG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	859
BstV1I	GCAGC	4 cut(s)	225, 295, 918, 957
BstV2I	GAAGAC	3 cut(s)	541, 824, 946
BstXI	CCANNNNNNTGG	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	90, 857
BtsCI	GGATG	4 cut(s)	406, 703, 979, 1034
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	44, 606
CciI	TCATGA	2 cut(s)	180, 187
CfoI	GCGC	1 cut(s)	753
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	855, 856
CseI	GACGC	2 cut(s)	41, 951
Csp6I	GTAC	3 cut(s)	82, 524, 688
CviAII	CATG	4 cut(s)	181, 188, 464, 881
CviQI	GTAC	3 cut(s)	82, 524, 688
DdeI	CTNAG	4 cut(s)	666, 702, 722, 935
DpnI	GATC	3 cut(s)	62, 584, 888
DpnII	GATC	3 cut(s)	60, 582, 886
DraIII	CACNNNGTG	1 cut(s)	884
DrdI	GACNNNNNNGTC	2 cut(s)	974, 1029
DseDI	GACNNNNNNGTC	2 cut(s)	974, 1029
Eam1104I	CTCTTC	3 cut(s)	341, 636, 771
EarI	CTCTTC	3 cut(s)	341, 636, 771
EciI	GGCGGA	1 cut(s)	920
Eco130I	CCWWGG	2 cut(s)	137, 153
Eco24I	GRGCYC	1 cut(s)	859
Eco31I	GGTCTC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	660
EcoNI	CCTNNNNNAGG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	856
EcoRI	GAATTC	1 cut(s)	176
EcoT14I	CCWWGG	2 cut(s)	137, 153
EcoT22I	ATGCAT	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	859
ErhI	CCWWGG	2 cut(s)	137, 153
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	4 cut(s)	184, 191, 467, 884
FaiI	YATR	5 cut(s)	182, 189, 326, 465, 882
FatI	CATG	4 cut(s)	180, 187, 463, 880
FauI	CCCGC	1 cut(s)	941
FbaI	TGATCA	1 cut(s)	886
Fnu4HI	GCNGC	4 cut(s)	214, 309, 932, 946
FokI	GGATG	4 cut(s)	413, 710, 986, 1041
FriOI	GRGCYC	1 cut(s)	859
Fsp4HI	GCNGC	4 cut(s)	214, 309, 932, 946
GlaI	GCGC	1 cut(s)	752
GluI	GCNGC	4 cut(s)	214, 309, 932, 946
HaeIII	GGCC	2 cut(s)	90, 857
HapII	CCGG	4 cut(s)	87, 296, 303, 413
HgaI	GACGC	2 cut(s)	41, 951
HhaI	GCGC	1 cut(s)	753
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	184, 191, 467, 884
Hin6I	GCGC	1 cut(s)	751
HinP1I	GCGC	1 cut(s)	751
HinfI	GANTC	7 cut(s)	184, 361, 510, 595, 662, 767, 917
HpaII	CCGG	4 cut(s)	87, 296, 303, 413
HphI	GGTGA	5 cut(s)	31, 219, 454, 896, 926
Hpy188I	TCNGA	5 cut(s)	167, 322, 360, 980, 1035
Hpy188III	TCNNGA	7 cut(s)	58, 181, 188, 340, 371, 599, 836
Hpy99I	CGWCG	4 cut(s)	35, 283, 991, 1046
HpyAV	CCTTC	4 cut(s)	197, 201, 244, 248
HpyCH4III	ACNGT	7 cut(s)	16, 283, 442, 692, 991, 1004, 1046
HpyCH4IV	ACGT	3 cut(s)	454, 546, 909
HpyCH4V	TGCA	5 cut(s)	7, 275, 328, 391, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 149, 292, 308
HpyF3I	CTNAG	4 cut(s)	666, 702, 722, 935
HpySE526I	ACGT	3 cut(s)	454, 546, 909
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	184, 191, 467, 884
HspAI	GCGC	1 cut(s)	751
Ksp22I	TGATCA	1 cut(s)	886
Kzo9I	GATC	3 cut(s)	60, 582, 886
LmnI	GCTCC	6 cut(s)	210, 221, 257, 715, 748, 820
LpnPI	CCDG	7 cut(s)	100, 309, 316, 330, 426, 492, 527
Lsp1109I	GCAGC	4 cut(s)	225, 295, 918, 957
LweI	GCATC	3 cut(s)	262, 284, 688
MaeII	ACGT	3 cut(s)	454, 546, 909
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	3 cut(s)	62, 584, 888
MboI	GATC	3 cut(s)	60, 582, 886
MfeI	CAATTG	2 cut(s)	121, 741
MhlI	GDGCHC	2 cut(s)	26, 859
MluCI	AATT	8 cut(s)	121, 176, 234, 366, 647, 741, 783, 845
MlyI	GAGTC	4 cut(s)	370, 519, 671, 776
MmeI	TCCRAC	2 cut(s)	300, 475
Mph1103I	ATGCAT	1 cut(s)	277
MseI	TTAA	9 cut(s)	171, 198, 237, 245, 377, 419, 786, 993, 1048
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	948
MspCI	CTTAAG	2 cut(s)	197, 244
MspI	CCGG	4 cut(s)	87, 296, 303, 413
MspR9I	CCNGG	1 cut(s)	87
MunI	CAATTG	2 cut(s)	121, 741
Mva1269I	GAATGC	1 cut(s)	477
MwoI	GCNNNNNNNGC	4 cut(s)	101, 149, 292, 308
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	3 cut(s)	60, 582, 886
NlaIII	CATG	4 cut(s)	184, 191, 467, 884
NlaIV	GGNNCC	2 cut(s)	678, 857
NmeAIII	GCCGAG	1 cut(s)	453
NmuCI	GTSAC	1 cut(s)	442
NsiI	ATGCAT	1 cut(s)	277
OliI	CACNNNNGTG	1 cut(s)	17
PagI	TCATGA	2 cut(s)	180, 187
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	184, 595, 917
Pfl23II	CGTACG	1 cut(s)	523
PkrI	GCNGC	4 cut(s)	215, 310, 933, 947
PleI	GAGTC	4 cut(s)	369, 518, 670, 775
PpsI	GAGTC	4 cut(s)	369, 518, 670, 775
PspLI	CGTACG	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	678, 857
PspOMI	GGGCCC	1 cut(s)	855
PspPI	GGNCC	2 cut(s)	855, 856
RsaI	GTAC	3 cut(s)	83, 525, 689
RsaNI	GTAC	3 cut(s)	82, 524, 688
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	9 cut(s)	171, 198, 237, 245, 377, 419, 786, 993, 1048
SatI	GCNGC	4 cut(s)	214, 309, 932, 946
Sau3AI	GATC	3 cut(s)	60, 582, 886
Sau96I	GGNCC	2 cut(s)	855, 856
SchI	GAGTC	4 cut(s)	370, 519, 671, 776
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	2 cut(s)	26, 859
SfaNI	GCATC	3 cut(s)	262, 284, 688
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	197, 244
SmoI	CTYRAG	2 cut(s)	197, 244
Sse9I	AATT	8 cut(s)	121, 176, 234, 366, 647, 741, 783, 845
SsiI	CCGC	3 cut(s)	311, 905, 948
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	2 cut(s)	137, 153
TaaI	ACNGT	7 cut(s)	16, 283, 442, 692, 991, 1004, 1046
TaiI	ACGT	3 cut(s)	457, 549, 912
TaqII	GACCGA	1 cut(s)	279
TasI	AATT	8 cut(s)	121, 176, 234, 366, 647, 741, 783, 845
TfiI	GAWTC	3 cut(s)	184, 595, 917
Tru1I	TTAA	9 cut(s)	171, 198, 237, 245, 377, 419, 786, 993, 1048
Tru9I	TTAA	9 cut(s)	171, 198, 237, 245, 377, 419, 786, 993, 1048
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	4 cut(s)	213, 308, 931, 945
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	169, 189, 197
TspGWI	ACGGA	1 cut(s)	607
TspRI	CASTG	1 cut(s)	267
Vha464I	CTTAAG	2 cut(s)	197, 244
XagI	CCTNNNNNAGG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.