Protein ROOT HAIR DEFECTIVE 3 homolog
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 733 |
| AciI | CCGC | 3 cut(s) | 712, 1467, 1764 |
| AclI | AACGTT | 3 cut(s) | 855, 870, 1034 |
| AclWI | GGATC | 2 cut(s) | 71, 846 |
| AcoI | YGGCCR | 2 cut(s) | 37, 478 |
| AcsI | RAATTY | 2 cut(s) | 47, 516 |
| AfaI | GTAC | 4 cut(s) | 507, 613, 1001, 1147 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 778, 779, 873 |
| AjnI | CCWGG | 1 cut(s) | 834 |
| Alw21I | GWGCWC | 4 cut(s) | 158, 349, 799, 993 |
| Alw26I | GTCTC | 2 cut(s) | 518, 660 |
| Alw44I | GTGCAC | 1 cut(s) | 989 |
| AlwI | GGATC | 2 cut(s) | 71, 846 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1154, 1232 |
| Ama87I | CYCGRG | 1 cut(s) | 778 |
| Aor13HI | TCCGGA | 1 cut(s) | 733 |
| AoxI | GGCC | 3 cut(s) | 37, 478, 1382 |
| ApaLI | GTGCAC | 1 cut(s) | 989 |
| ApeKI | GCWGC | 7 cut(s) | 95, 419, 709, 1154, 1451, 1769, 1802 |
| ApoI | RAATTY | 2 cut(s) | 47, 516 |
| AseI | ATTAAT | 1 cut(s) | 567 |
| AspLEI | GCGC | 5 cut(s) | 358, 1369, 1439, 1769, 1802 |
| AspS9I | GGNCC | 3 cut(s) | 134, 473, 1382 |
| AsuC2I | CCSGG | 1 cut(s) | 477 |
| AsuHPI | GGTGA | 3 cut(s) | 56, 764, 989 |
| AsuII | TTCGAA | 1 cut(s) | 1245 |
| AvaI | CYCGRG | 1 cut(s) | 778 |
| AvaII | GGWCC | 2 cut(s) | 134, 473 |
| BaeGI | GKGCMC | 1 cut(s) | 993 |
| BanII | GRGCYC | 1 cut(s) | 317 |
| BbsI | GAAGAC | 4 cut(s) | 494, 1089, 1110, 1234 |
| Bbv12I | GWGCWC | 4 cut(s) | 158, 349, 799, 993 |
| BbvI | GCAGC | 7 cut(s) | 82, 406, 721, 1141, 1463, 1756, 1814 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 385, 419 |
| BciT130I | CCWGG | 1 cut(s) | 836 |
| BclI | TGATCA | 1 cut(s) | 1011 |
| BcnI | CCSGG | 1 cut(s) | 477 |
| BcoDI | GTCTC | 2 cut(s) | 518, 660 |
| BfmI | CTRYAG | 1 cut(s) | 1361 |
| BfoI | RGCGCY | 3 cut(s) | 1370, 1440, 1770 |
| BisI | GCNGC | 9 cut(s) | 96, 420, 710, 1155, 1452, 1468, 1765, 1770, 1803 |
| BlpI | GCTNAGC | 2 cut(s) | 798, 1370 |
| BlsI | GCNGC | 9 cut(s) | 97, 421, 711, 1156, 1453, 1469, 1766, 1771, 1804 |
| Bme1390I | CCNGG | 2 cut(s) | 477, 836 |
| Bme18I | GGWCC | 2 cut(s) | 134, 473 |
| BmeT110I | CYCGRG | 1 cut(s) | 778 |
| BmgT120I | GGNCC | 3 cut(s) | 134, 473, 1382 |
| BmiI | GGNNCC | 4 cut(s) | 135, 218, 475, 1383 |
| BmrFI | CCNGG | 2 cut(s) | 477, 836 |
| BmsI | GCATC | 4 cut(s) | 1081, 1103, 1141, 1156 |
| BpiI | GAAGAC | 4 cut(s) | 494, 1089, 1110, 1234 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 299, 331, 1251, 1283 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1287 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 798, 1370 |
| Bpu14I | TTCGAA | 1 cut(s) | 1245 |
| BpuEI | CTTGAG | 1 cut(s) | 1253 |
| BpuMI | CCSGG | 1 cut(s) | 477 |
| Bsa29I | ATCGAT | 1 cut(s) | 33 |
| BsaAI | YACGTR | 1 cut(s) | 509 |
| BsaBI | GATNNNNATC | 1 cut(s) | 68 |
| BsaI | GGTCTC | 1 cut(s) | 518 |
| BsaJI | CCNNGG | 3 cut(s) | 40, 777, 1138 |
| BsaWI | WCCGGW | 1 cut(s) | 733 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 778, 779, 873 |
| Bse118I | RCCGGY | 8 cut(s) | 1499, 1532, 1565, 1598, 1631, 1664, 1697, 1730 |
| Bse1I | ACTGG | 1 cut(s) | 942 |
| Bse3DI | GCAATG | 1 cut(s) | 1429 |
| Bse8I | GATNNNNATC | 1 cut(s) | 68 |
| BseAI | TCCGGA | 1 cut(s) | 733 |
| BseBI | CCWGG | 1 cut(s) | 836 |
| BseCI | ATCGAT | 1 cut(s) | 33 |
| BseDI | CCNNGG | 3 cut(s) | 40, 777, 1138 |
| BseGI | GGATG | 6 cut(s) | 88, 205, 1148, 1183, 1311, 1420 |
| BseJI | GATNNNNATC | 1 cut(s) | 68 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 778, 779, 873 |
| BseMI | GCAATG | 1 cut(s) | 1429 |
| BseMII | CTCAG | 4 cut(s) | 152, 634, 812, 1104 |
| BseNI | ACTGG | 1 cut(s) | 942 |
| BseRI | GAGGAG | 3 cut(s) | 701, 704, 896 |
| BseSI | GKGCMC | 1 cut(s) | 993 |
| BseX3I | CGGCCG | 1 cut(s) | 478 |
| BseXI | GCAGC | 7 cut(s) | 82, 406, 721, 1141, 1463, 1756, 1814 |
| BseYI | CCCAGC | 1 cut(s) | 994 |
| Bsh1285I | CGRYCG | 1 cut(s) | 481 |
| BshFI | GGCC | 3 cut(s) | 39, 480, 1384 |
| BshVI | ATCGAT | 1 cut(s) | 33 |
| BsiEI | CGRYCG | 1 cut(s) | 481 |
| BsiHKAI | GWGCWC | 4 cut(s) | 158, 349, 799, 993 |
| BsiHKCI | CYCGRG | 1 cut(s) | 778 |
| BslFI | GGGAC | 4 cut(s) | 459, 593, 755, 1233 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 778, 779, 873 |
| BsmAI | GTCTC | 2 cut(s) | 518, 660 |
| BsmFI | GGGAC | 4 cut(s) | 459, 593, 755, 1233 |
| BsmI | GAATGC | 1 cut(s) | 329 |
| BsnI | GGCC | 3 cut(s) | 39, 480, 1384 |
| Bso31I | GGTCTC | 1 cut(s) | 518 |
| BsoBI | CYCGRG | 1 cut(s) | 778 |
| Bsp119I | TTCGAA | 1 cut(s) | 1245 |
| Bsp1286I | GDGCHC | 5 cut(s) | 158, 317, 349, 799, 993 |
| Bsp13I | TCCGGA | 1 cut(s) | 733 |
| Bsp1407I | TGTACA | 1 cut(s) | 1145 |
| Bsp143I | GATC | 3 cut(s) | 63, 838, 1011 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 798, 1370 |
| Bsp19I | CCATGG | 1 cut(s) | 1138 |
| BspACI | CCGC | 3 cut(s) | 712, 1467, 1764 |
| BspANI | GGCC | 3 cut(s) | 39, 480, 1384 |
| BspCNI | CTCAG | 4 cut(s) | 151, 633, 811, 1105 |
| BspDI | ATCGAT | 1 cut(s) | 33 |
| BspEI | TCCGGA | 1 cut(s) | 733 |
| BspLI | GGNNCC | 4 cut(s) | 135, 218, 475, 1383 |
| BspMAI | CTGCAG | 1 cut(s) | 1365 |
| BspPI | GGATC | 2 cut(s) | 71, 846 |
| BspQI | GCTCTTC | 1 cut(s) | 146 |
| BspT104I | TTCGAA | 1 cut(s) | 1245 |
| BspTNI | GGTCTC | 1 cut(s) | 518 |
| BsrDI | GCAATG | 1 cut(s) | 1429 |
| BsrFI | RCCGGY | 8 cut(s) | 1499, 1532, 1565, 1598, 1631, 1664, 1697, 1730 |
| BsrGI | TGTACA | 1 cut(s) | 1145 |
| BsrI | ACTGG | 1 cut(s) | 942 |
| BssAI | RCCGGY | 8 cut(s) | 1499, 1532, 1565, 1598, 1631, 1664, 1697, 1730 |
| BssECI | CCNNGG | 3 cut(s) | 40, 777, 1138 |
| BssMI | GATC | 3 cut(s) | 63, 838, 1011 |
| BssT1I | CCWWGG | 1 cut(s) | 1138 |
| Bst2UI | CCWGG | 1 cut(s) | 836 |
| Bst4CI | ACNGT | 1 cut(s) | 445 |
| Bst6I | CTCTTC | 2 cut(s) | 146, 1320 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1232, 1457 |
| BstAUI | TGTACA | 1 cut(s) | 1145 |
| BstBAI | YACGTR | 1 cut(s) | 509 |
| BstBI | TTCGAA | 1 cut(s) | 1245 |
| BstDEI | CTNAG | 8 cut(s) | 138, 437, 620, 798, 1113, 1202, 1287, 1370 |
| BstDSI | CCRYGG | 2 cut(s) | 40, 1138 |
| BstF5I | GGATG | 6 cut(s) | 88, 205, 1148, 1183, 1311, 1420 |
| BstH2I | RGCGCY | 3 cut(s) | 1370, 1440, 1770 |
| BstHHI | GCGC | 5 cut(s) | 358, 1369, 1439, 1769, 1802 |
| BstKTI | GATC | 3 cut(s) | 66, 841, 1014 |
| BstMAI | GTCTC | 2 cut(s) | 518, 660 |
| BstMBI | GATC | 3 cut(s) | 63, 838, 1011 |
| BstMCI | CGRYCG | 1 cut(s) | 481 |
| BstNI | CCWGG | 1 cut(s) | 836 |
| BstNSI | RCATGY | 1 cut(s) | 1226 |
| BstSCI | CCNGG | 2 cut(s) | 475, 834 |
| BstSFI | CTRYAG | 1 cut(s) | 1361 |
| BstSLI | GKGCMC | 1 cut(s) | 993 |
| BstV1I | GCAGC | 7 cut(s) | 82, 406, 721, 1141, 1463, 1756, 1814 |
| BstV2I | GAAGAC | 4 cut(s) | 494, 1089, 1110, 1234 |
| BstX2I | RGATCY | 1 cut(s) | 838 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1351 |
| BstYI | RGATCY | 1 cut(s) | 838 |
| BstZI | CGGCCG | 1 cut(s) | 478 |
| Bsu15I | ATCGAT | 1 cut(s) | 33 |
| BsuRI | GGCC | 3 cut(s) | 39, 480, 1384 |
| BsuTUI | ATCGAT | 1 cut(s) | 33 |
| BtgI | CCRYGG | 2 cut(s) | 40, 1138 |
| BtsCI | GGATG | 6 cut(s) | 88, 205, 1148, 1183, 1311, 1420 |
| BtsI | GCAGTG | 2 cut(s) | 151, 301 |
| BtsIMutI | CAGTG | 4 cut(s) | 151, 301, 628, 1110 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1154, 1232 |
| CfoI | GCGC | 5 cut(s) | 358, 1369, 1439, 1769, 1802 |
| Cfr10I | RCCGGY | 8 cut(s) | 1499, 1532, 1565, 1598, 1631, 1664, 1697, 1730 |
| Cfr13I | GGNCC | 3 cut(s) | 134, 473, 1382 |
| ClaI | ATCGAT | 1 cut(s) | 33 |
| CseI | GACGC | 1 cut(s) | 7 |
| Csp6I | GTAC | 4 cut(s) | 506, 612, 1000, 1146 |
| CviAII | CATG | 5 cut(s) | 130, 320, 605, 1139, 1223 |
| CviQI | GTAC | 4 cut(s) | 506, 612, 1000, 1146 |
| DdeI | CTNAG | 8 cut(s) | 138, 437, 620, 798, 1113, 1202, 1287, 1370 |
| DpnI | GATC | 3 cut(s) | 65, 840, 1013 |
| DpnII | GATC | 3 cut(s) | 63, 838, 1011 |
| DraI | TTTAAA | 1 cut(s) | 1039 |
| EaeI | YGGCCR | 2 cut(s) | 37, 478 |
| EagI | CGGCCG | 1 cut(s) | 478 |
| Eam1104I | CTCTTC | 2 cut(s) | 146, 1320 |
| EarI | CTCTTC | 2 cut(s) | 146, 1320 |
| EclXI | CGGCCG | 1 cut(s) | 478 |
| Eco130I | CCWWGG | 1 cut(s) | 1138 |
| Eco24I | GRGCYC | 1 cut(s) | 317 |
| Eco31I | GGTCTC | 1 cut(s) | 518 |
| Eco47I | GGWCC | 2 cut(s) | 134, 473 |
| Eco52I | CGGCCG | 1 cut(s) | 478 |
| Eco88I | CYCGRG | 1 cut(s) | 778 |
| EcoO109I | RGGNCCY | 1 cut(s) | 134 |
| EcoRI | GAATTC | 1 cut(s) | 47 |
| EcoRII | CCWGG | 1 cut(s) | 834 |
| EcoT14I | CCWWGG | 1 cut(s) | 1138 |
| EcoT22I | ATGCAT | 1 cut(s) | 1096 |
| EcoT38I | GRGCYC | 1 cut(s) | 317 |
| ErhI | CCWWGG | 1 cut(s) | 1138 |
| FaeI | CATG | 5 cut(s) | 133, 323, 608, 1142, 1226 |
| FaqI | GGGAC | 4 cut(s) | 459, 593, 755, 1233 |
| FatI | CATG | 5 cut(s) | 129, 319, 604, 1138, 1222 |
| FbaI | TGATCA | 1 cut(s) | 1011 |
| Fnu4HI | GCNGC | 9 cut(s) | 96, 420, 710, 1155, 1452, 1468, 1765, 1770, 1803 |
| FokI | GGATG | 6 cut(s) | 95, 212, 1155, 1190, 1318, 1427 |
| FriOI | GRGCYC | 1 cut(s) | 317 |
| Fsp4HI | GCNGC | 9 cut(s) | 96, 420, 710, 1155, 1452, 1468, 1765, 1770, 1803 |
| GlaI | GCGC | 5 cut(s) | 357, 1368, 1438, 1768, 1801 |
| GluI | GCNGC | 9 cut(s) | 96, 420, 710, 1155, 1452, 1468, 1765, 1770, 1803 |
| GsaI | CCCAGC | 1 cut(s) | 998 |
| HaeII | RGCGCY | 3 cut(s) | 1370, 1440, 1770 |
| HaeIII | GGCC | 3 cut(s) | 39, 480, 1384 |
| HgaI | GACGC | 1 cut(s) | 7 |
| HhaI | GCGC | 5 cut(s) | 358, 1369, 1439, 1769, 1802 |
| Hin1II | CATG | 5 cut(s) | 133, 323, 608, 1142, 1226 |
| Hin6I | GCGC | 5 cut(s) | 356, 1367, 1437, 1767, 1800 |
| HinP1I | GCGC | 5 cut(s) | 356, 1367, 1437, 1767, 1800 |
| HincII | GTYRAC | 2 cut(s) | 88, 912 |
| HindII | GTYRAC | 2 cut(s) | 88, 912 |
| HindIII | AAGCTT | 1 cut(s) | 1316 |
| HinfI | GANTC | 3 cut(s) | 107, 1115, 1264 |
| HphI | GGTGA | 3 cut(s) | 56, 764, 989 |
| Hpy166II | GTNNAC | 5 cut(s) | 88, 614, 912, 991, 1002 |
| Hpy188I | TCNGA | 8 cut(s) | 141, 370, 407, 591, 953, 1031, 1104, 1210 |
| Hpy188III | TCNNGA | 5 cut(s) | 334, 521, 734, 780, 923 |
| Hpy8I | GTNNAC | 5 cut(s) | 88, 614, 912, 991, 1002 |
| HpyAV | CCTTC | 6 cut(s) | 207, 538, 731, 855, 962, 1273 |
| HpyCH4III | ACNGT | 1 cut(s) | 445 |
| HpyCH4IV | ACGT | 7 cut(s) | 491, 508, 855, 870, 1024, 1034, 1840 |
| HpyF3I | CTNAG | 8 cut(s) | 138, 437, 620, 798, 1113, 1202, 1287, 1370 |
| HpySE526I | ACGT | 7 cut(s) | 491, 508, 855, 870, 1024, 1034, 1840 |
| Hsp92II | CATG | 5 cut(s) | 133, 323, 608, 1142, 1226 |
| HspAI | GCGC | 5 cut(s) | 356, 1367, 1437, 1767, 1800 |
| Kpn2I | TCCGGA | 1 cut(s) | 733 |
| KroI | GCCGGC | 6 cut(s) | 1532, 1565, 1598, 1631, 1664, 1697 |
| KroNI | GCCGGC | 6 cut(s) | 1534, 1567, 1600, 1633, 1666, 1699 |
| Ksp22I | TGATCA | 1 cut(s) | 1011 |
| Kzo9I | GATC | 3 cut(s) | 63, 838, 1011 |
| LguI | GCTCTTC | 1 cut(s) | 146 |
| Lsp1109I | GCAGC | 7 cut(s) | 82, 406, 721, 1141, 1463, 1756, 1814 |
| LweI | GCATC | 4 cut(s) | 1081, 1103, 1141, 1156 |
| MaeII | ACGT | 7 cut(s) | 491, 508, 855, 870, 1024, 1034, 1840 |
| MaeIII | GTNAC | 4 cut(s) | 19, 296, 492, 752 |
| MalI | GATC | 3 cut(s) | 65, 840, 1013 |
| MboI | GATC | 3 cut(s) | 63, 838, 1011 |
| MflI | RGATCY | 1 cut(s) | 838 |
| MhlI | GDGCHC | 5 cut(s) | 158, 317, 349, 799, 993 |
| MluCI | AATT | 7 cut(s) | 47, 363, 516, 701, 721, 954, 1171 |
| MlyI | GAGTC | 1 cut(s) | 1124 |
| MmeI | TCCRAC | 2 cut(s) | 622, 1378 |
| Mph1103I | ATGCAT | 1 cut(s) | 1096 |
| MreI | CGCCGGCG | 5 cut(s) | 1532, 1565, 1598, 1631, 1664 |
| MroI | TCCGGA | 1 cut(s) | 733 |
| MroNI | GCCGGC | 6 cut(s) | 1532, 1565, 1598, 1631, 1664, 1697 |
| MseI | TTAA | 3 cut(s) | 567, 1038, 1134 |
| MslI | CAYNNNNRTG | 2 cut(s) | 161, 621 |
| MspA1I | CMGCKG | 3 cut(s) | 712, 1351, 1805 |
| MspR9I | CCNGG | 2 cut(s) | 477, 836 |
| Mva1269I | GAATGC | 1 cut(s) | 329 |
| MvaI | CCWGG | 1 cut(s) | 836 |
| NaeI | GCCGGC | 6 cut(s) | 1534, 1567, 1600, 1633, 1666, 1699 |
| NciI | CCSGG | 1 cut(s) | 477 |
| NcoI | CCATGG | 1 cut(s) | 1138 |
| NdeII | GATC | 3 cut(s) | 63, 838, 1011 |
| NgoMIV | GCCGGC | 6 cut(s) | 1532, 1565, 1598, 1631, 1664, 1697 |
| NlaIII | CATG | 5 cut(s) | 133, 323, 608, 1142, 1226 |
| NlaIV | GGNNCC | 4 cut(s) | 135, 218, 475, 1383 |
| NmuCI | GTSAC | 3 cut(s) | 19, 296, 752 |
| NsiI | ATGCAT | 1 cut(s) | 1096 |
| NspI | RCATGY | 1 cut(s) | 1226 |
| NspV | TTCGAA | 1 cut(s) | 1245 |
| PciSI | GCTCTTC | 1 cut(s) | 146 |
| PctI | GAATGC | 1 cut(s) | 329 |
| PdiI | GCCGGC | 6 cut(s) | 1534, 1567, 1600, 1633, 1666, 1699 |
| PfeI | GAWTC | 2 cut(s) | 107, 1264 |
| PkrI | GCNGC | 9 cut(s) | 97, 421, 711, 1156, 1453, 1469, 1766, 1771, 1804 |
| PleI | GAGTC | 1 cut(s) | 1123 |
| PpsI | GAGTC | 1 cut(s) | 1123 |
| Ppu21I | YACGTR | 1 cut(s) | 509 |
| PpuMI | RGGWCCY | 1 cut(s) | 134 |
| PshBI | ATTAAT | 1 cut(s) | 567 |
| Psp1406I | AACGTT | 3 cut(s) | 855, 870, 1034 |
| Psp5II | RGGWCCY | 1 cut(s) | 134 |
| Psp6I | CCWGG | 1 cut(s) | 834 |
| PspFI | CCCAGC | 1 cut(s) | 994 |
| PspGI | CCWGG | 1 cut(s) | 834 |
| PspN4I | GGNNCC | 4 cut(s) | 135, 218, 475, 1383 |
| PspPI | GGNCC | 3 cut(s) | 134, 473, 1382 |
| PspPPI | RGGWCCY | 1 cut(s) | 134 |
| PstI | CTGCAG | 1 cut(s) | 1365 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1154, 1232 |
| PsuI | RGATCY | 1 cut(s) | 838 |
| PvuII | CAGCTG | 2 cut(s) | 1351, 1805 |
| RsaI | GTAC | 4 cut(s) | 507, 613, 1001, 1147 |
| RsaNI | GTAC | 4 cut(s) | 506, 612, 1000, 1146 |
| RseI | CAYNNNNRTG | 2 cut(s) | 161, 621 |
| SapI | GCTCTTC | 1 cut(s) | 146 |
| SaqAI | TTAA | 3 cut(s) | 567, 1038, 1134 |
| SatI | GCNGC | 9 cut(s) | 96, 420, 710, 1155, 1452, 1468, 1765, 1770, 1803 |
| Sau3AI | GATC | 3 cut(s) | 63, 838, 1011 |
| Sau96I | GGNCC | 3 cut(s) | 134, 473, 1382 |
| SchI | GAGTC | 1 cut(s) | 1124 |
| ScrFI | CCNGG | 2 cut(s) | 477, 836 |
| SduI | GDGCHC | 5 cut(s) | 158, 317, 349, 799, 993 |
| SfaNI | GCATC | 4 cut(s) | 1081, 1103, 1141, 1156 |
| SfcI | CTRYAG | 1 cut(s) | 1361 |
| SfuI | TTCGAA | 1 cut(s) | 1245 |
| SgrAI | CRCCGGYG | 6 cut(s) | 1499, 1532, 1565, 1598, 1631, 1664 |
| SinI | GGWCC | 2 cut(s) | 134, 473 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 161, 621 |
| SmlI | CTYRAG | 1 cut(s) | 1268 |
| SmoI | CTYRAG | 1 cut(s) | 1268 |
| Sse9I | AATT | 7 cut(s) | 47, 363, 516, 701, 721, 954, 1171 |
| SsiI | CCGC | 3 cut(s) | 712, 1467, 1764 |
| StyD4I | CCNGG | 2 cut(s) | 475, 834 |
| StyI | CCWWGG | 1 cut(s) | 1138 |
| TaaI | ACNGT | 1 cut(s) | 445 |
| TaiI | ACGT | 7 cut(s) | 494, 511, 858, 873, 1027, 1037, 1843 |
| TaqI | TCGA | 7 cut(s) | 33, 66, 282, 333, 1192, 1245, 1776 |
| TasI | AATT | 7 cut(s) | 47, 363, 516, 701, 721, 954, 1171 |
| TatI | WGTACW | 2 cut(s) | 611, 1145 |
| TauI | GCSGC | 2 cut(s) | 1470, 1767 |
| TfiI | GAWTC | 2 cut(s) | 107, 1264 |
| Tru1I | TTAA | 3 cut(s) | 567, 1038, 1134 |
| Tru9I | TTAA | 3 cut(s) | 567, 1038, 1134 |
| TscAI | CASTG | 4 cut(s) | 151, 301, 628, 1117 |
| TseFI | GTSAC | 3 cut(s) | 19, 296, 752 |
| TseI | GCWGC | 7 cut(s) | 95, 419, 709, 1154, 1451, 1769, 1802 |
| Tsp45I | GTSAC | 3 cut(s) | 19, 296, 752 |
| TspDTI | ATGAA | 2 cut(s) | 179, 621 |
| TspGWI | ACGGA | 1 cut(s) | 1228 |
| TspRI | CASTG | 4 cut(s) | 151, 301, 628, 1117 |
| VneI | GTGCAC | 1 cut(s) | 989 |
| VpaK11BI | GGWCC | 2 cut(s) | 134, 473 |
| VspI | ATTAAT | 1 cut(s) | 567 |
| XapI | RAATTY | 2 cut(s) | 47, 516 |
| XceI | RCATGY | 1 cut(s) | 1226 |
| Zsp2I | ATGCAT | 1 cut(s) | 1096 |