RchiOBHm_Chr7g0226131

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000525
Physical Location & Seq
Reverse (-)
49193760 .. 49197757
3998 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20253

Sequence Viewer

Length: 1449 bp
ATGGAGAAAGATTACTGTGTTACGCAACTCATCGATGGCAATGGTGAATTCAATGCTTCTGGGATCAACAACTTCACAAAGGATGTCAAGTTTGCTGCGTCCGGAGAATCCTATGCCGTCGTTGCCGTCATGGGTCCTCAGAGCAGTGGGAAGAGCACTTTGATGAACCATCTTTTCCACACCGACTTCAAGGAGATGAATGGCAAAGAAGGAAGGCACCAAACAACATTGGGCATTTGGATAGCCAAGTGCGTTGGCATCACGCCTTACACGATCGCCGTGGATTTGGAGGGCAGTGATGGCAGGGAGAGAGGCTCGCATGATACCGCATTCGAGAAACAAAGTGCTCTATTTGCACTAGCAGTTTCAGACATTGTTCTGATGAATATGTGGTGCACTGAAATTGGTCGAGAGCAGGCTGCAAACAAACCTTTACTAAGAACAGTTATGATGAGCTTATTCGGCCCCGGCCGTAAGAAGACACTACTGTTTGTTGTACGTGATAAAATTCCAGAGATATGGGATGAAGTTCCGAAGCCCCATGAACATGAAAGTACCCATCTCAGTGAATGTTTCAGGGTAGAAGTAGTTGCTATGTCCCATTACGTCTACGAGAGGAAGAAGTTTGAGGAGGAGGTTGCTGAACTGAGGCAGCGTTTTTCCAACTCTATTTCTCCTGGAGGGCTTGCTGGTGGTGATAGAAGAGGTGTTGTCCCCGCATCAGGATTTTCTTTCAGTGCGCAGCAAATTTGGAAACAAATCAAAGAGAACAAGGACCTGGATCTTCCTTCTCTCAATGTTATGGTTGCAAACTTTCGGTGTGATGATATTGCGAAACAGAAATTTGATGAGTTGACCAAAAATCAGGATTGGTTGAAATTGGAGGAAGCTGTCAAAAGTGGTCCTGTGAAAGGTTTCGGTGAAAGGCTCAGCTTAATTCTGGAGACATGTTTTAATGAATATGAGATAGAGGCCAAATTCTTTGACGAAGGTGTAAAGAACACGAAACGACATGACGTATTGGAGAAAAGAGCATATGAGTTTGTGCAACCTGCCTATACTACCATGCTCGAACACATACGTTCTAAAGCATATAAAGAGTTTGAAGCGAGATTGACTGAGGCATTAGCCAAAGGAGAAGCATTAGTTGCAGCTGTTGAGACCCTTACTCGGGCTTCTATTACTGAGTTTGACCAAGGATGTGCAGATGCTGCCATAAAACAAGCTGTTAAGTGGGATTACTCAAGCATTCGGGATAAACTCCGATCTGATATAGAAGCACGTGTGCATTGTGTTTATAATGATAACATCATTGCAGACTTGAAAAGAATGAATCTGGAAAATAAGGTAATCTTCTATTGTTCTACAAAGAAAATGTATCAAGCTATAATTATTATATGTTTGAGCATAATTATTTACTTATGCGCAGAATATACTCAAATCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

482

Amino Acids

54.56

Weight (kDa)

5.97

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
URGCP_GTPase PF25683 10 - 136 2.4e-07 URGCP-like GTPase domain
RHD3_GTPase PF05879 44 - 263 1.7e-81 Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
Sey1_3HB PF20428 304 - 437 8.8e-25 Sey1 three-helix bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1299
Acc16I TGCGCA 2 cut(s) 741, 1426
Acc36I ACCTGC 1 cut(s) 1060
AccB1I GGYRCC 1 cut(s) 216
AccI GTMKAC 1 cut(s) 609
AccIII TCCGGA 1 cut(s) 101
AciI CCGC 2 cut(s) 327, 717
AclWI GGATC 2 cut(s) 71, 789
AcoI YGGCCR 1 cut(s) 469
AcsI RAATTY 5 cut(s) 47, 507, 747, 842, 977
AcvI CACGTG 1 cut(s) 1283
AfaI GTAC 2 cut(s) 498, 556
AfiI CCNNNNNNNGG 4 cut(s) 722, 911, 1170, 1171
AflIII ACRYGT 2 cut(s) 947, 1282
AgsI TTSAA 5 cut(s) 52, 190, 877, 1106, 1324
AjnI CCWGG 2 cut(s) 676, 777
AluBI AGCT 6 cut(s) 456, 890, 933, 1154, 1226, 1385
AluI AGCT 6 cut(s) 456, 890, 933, 1154, 1226, 1385
Alw21I GWGCWC 3 cut(s) 158, 349, 398
Alw26I GTCTC 2 cut(s) 938, 1154
Alw44I GTGCAC 1 cut(s) 394
AlwI GGATC 2 cut(s) 71, 789
AlwNI CAGNNNCTG 1 cut(s) 1211
Ama87I CYCGRG 1 cut(s) 1170
Aor13HI TCCGGA 1 cut(s) 101
AoxI GGCC 3 cut(s) 463, 469, 972
ApaLI GTGCAC 1 cut(s) 394
ApeKI GCWGC 6 cut(s) 95, 419, 652, 742, 1151, 1211
ApoI RAATTY 5 cut(s) 47, 507, 747, 842, 977
Asp700I GAANNNNTTC 1 cut(s) 914
AspLEI GCGC 2 cut(s) 742, 1427
AspS9I GGNCC 4 cut(s) 134, 464, 775, 902
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 3 cut(s) 56, 707, 932
AvaI CYCGRG 1 cut(s) 1170
AvaII GGWCC 3 cut(s) 134, 775, 902
BaeGI GKGCMC 1 cut(s) 398
BanI GGYRCC 1 cut(s) 216
BbrPI CACGTG 1 cut(s) 1283
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 3 cut(s) 158, 349, 398
BbvI GCAGC 6 cut(s) 82, 406, 664, 754, 1163, 1198
BccI CCATC 4 cut(s) 29, 177, 293, 567
BceAI ACGGC 4 cut(s) 101, 110, 263, 456
BciT130I CCWGG 2 cut(s) 678, 779
BcnI CCSGG 1 cut(s) 468
BcoDI GTCTC 2 cut(s) 938, 1154
BfaI CTAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 1060
BisI GCNGC 6 cut(s) 96, 420, 653, 743, 1152, 1212
BlpI GCTNAGC 1 cut(s) 929
BlsI GCNGC 6 cut(s) 97, 421, 654, 744, 1153, 1213
Bme1390I CCNGG 3 cut(s) 468, 678, 779
Bme18I GGWCC 3 cut(s) 134, 775, 902
BmeT110I CYCGRG 1 cut(s) 1170
BmgT120I GGNCC 4 cut(s) 134, 464, 775, 902
BmiI GGNNCC 3 cut(s) 135, 218, 466
BmrFI CCNGG 3 cut(s) 468, 678, 779
BmsI GCATC 3 cut(s) 267, 728, 1198
BpiI GAAGAC 1 cut(s) 485
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 2 cut(s) 699, 962
Bpu1102I GCTNAGC 1 cut(s) 929
BpuEI CTTGAG 1 cut(s) 1228
BpuMI CCSGG 1 cut(s) 468
Bsa29I ATCGAT 1 cut(s) 33
BsaAI YACGTR 2 cut(s) 500, 1283
BsaI GGTCTC 1 cut(s) 1154
BsaJI CCNNGG 3 cut(s) 279, 466, 1195
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 4 cut(s) 722, 911, 1170, 1171
Bse3DI GCAATG 2 cut(s) 46, 1311
BseAI TCCGGA 1 cut(s) 101
BseBI CCWGG 2 cut(s) 678, 779
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 3 cut(s) 279, 466, 1195
BseGI GGATG 3 cut(s) 88, 529, 1205
BseLI CCNNNNNNNGG 4 cut(s) 722, 911, 1170, 1171
BseMI GCAATG 2 cut(s) 46, 1311
BseMII CTCAG 6 cut(s) 152, 577, 638, 943, 1110, 1176
BseRI GAGGAG 2 cut(s) 644, 647
BseSI GKGCMC 1 cut(s) 398
BseX3I CGGCCG 1 cut(s) 469
BseXI GCAGC 6 cut(s) 82, 406, 664, 754, 1163, 1198
BsgI GTGCAG 1 cut(s) 1224
Bsh1285I CGRYCG 2 cut(s) 276, 472
BshFI GGCC 3 cut(s) 465, 471, 974
BshNI GGYRCC 1 cut(s) 216
BshVI ATCGAT 1 cut(s) 33
BsiEI CGRYCG 2 cut(s) 276, 472
BsiHKAI GWGCWC 3 cut(s) 158, 349, 398
BsiHKCI CYCGRG 1 cut(s) 1170
BsiSI CCGG 2 cut(s) 102, 468
BslFI GGGAC 2 cut(s) 583, 698
BslI CCNNNNNNNGG 4 cut(s) 722, 911, 1170, 1171
BsmAI GTCTC 2 cut(s) 938, 1154
BsmFI GGGAC 2 cut(s) 583, 698
BsmI GAATGC 2 cut(s) 329, 1248
BsnI GGCC 3 cut(s) 465, 471, 974
Bso31I GGTCTC 1 cut(s) 1154
BsoBI CYCGRG 1 cut(s) 1170
Bsp1286I GDGCHC 3 cut(s) 158, 349, 398
Bsp13I TCCGGA 1 cut(s) 101
Bsp143I GATC 4 cut(s) 63, 273, 781, 1265
Bsp1720I GCTNAGC 1 cut(s) 929
BspACI CCGC 2 cut(s) 327, 717
BspANI GGCC 3 cut(s) 465, 471, 974
BspCNI CTCAG 6 cut(s) 151, 576, 639, 942, 1111, 1177
BspDI ATCGAT 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 101
BspLI GGNNCC 3 cut(s) 135, 218, 466
BspMI ACCTGC 1 cut(s) 1060
BspPI GGATC 2 cut(s) 71, 789
BspQI GCTCTTC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 1154
BsrDI GCAATG 2 cut(s) 46, 1311
BssECI CCNNGG 3 cut(s) 279, 466, 1195
BssMI GATC 4 cut(s) 63, 273, 781, 1265
BssT1I CCWWGG 1 cut(s) 1195
Bst2UI CCWGG 2 cut(s) 678, 779
Bst4CI ACNGT 3 cut(s) 17, 445, 489
Bst6I CTCTTC 2 cut(s) 146, 697
BstAPI GCANNNNNTGC 2 cut(s) 1148, 1211
BstBAI YACGTR 2 cut(s) 500, 1283
BstC8I GCNNGC 3 cut(s) 317, 417, 687
BstDEI CTNAG 7 cut(s) 138, 437, 563, 647, 929, 1119, 1185
BstDSI CCRYGG 1 cut(s) 279
BstENI CCTNNNNNAGG 1 cut(s) 909
BstF5I GGATG 3 cut(s) 88, 529, 1205
BstHHI GCGC 2 cut(s) 742, 1427
BstKTI GATC 4 cut(s) 66, 276, 784, 1268
BstMAI GTCTC 2 cut(s) 938, 1154
BstMBI GATC 4 cut(s) 63, 273, 781, 1265
BstMCI CGRYCG 2 cut(s) 276, 472
BstMWI GCNNNNNNNGC 6 cut(s) 122, 300, 353, 462, 1148, 1211
BstNI CCWGG 2 cut(s) 678, 779
BstNSI RCATGY 1 cut(s) 951
BstSCI CCNGG 3 cut(s) 466, 676, 777
BstSLI GKGCMC 1 cut(s) 398
BstV1I GCAGC 6 cut(s) 82, 406, 664, 754, 1163, 1198
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 1 cut(s) 781
BstXI CCANNNNNNTGG 1 cut(s) 519
BstYI RGATCY 1 cut(s) 781
BstZI CGGCCG 1 cut(s) 469
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 3 cut(s) 465, 471, 974
BsuTUI ATCGAT 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 3 cut(s) 88, 529, 1205
BtsI GCAGTG 2 cut(s) 151, 301
BtsIMutI CAGTG 5 cut(s) 151, 301, 396, 571, 742
BveI ACCTGC 1 cut(s) 1060
Cac8I GCNNGC 3 cut(s) 317, 417, 687
CaiI CAGNNNCTG 1 cut(s) 1211
CfoI GCGC 2 cut(s) 742, 1427
Cfr13I GGNCC 4 cut(s) 134, 464, 775, 902
ClaI ATCGAT 1 cut(s) 33
CseI GACGC 1 cut(s) 87
Csp6I GTAC 2 cut(s) 497, 555
CviAII CATG 7 cut(s) 130, 320, 542, 548, 948, 1013, 1066
CviQI GTAC 2 cut(s) 497, 555
DdeI CTNAG 7 cut(s) 138, 437, 563, 647, 929, 1119, 1185
DpnI GATC 4 cut(s) 65, 275, 783, 1267
DpnII GATC 4 cut(s) 63, 273, 781, 1265
EaeI YGGCCR 1 cut(s) 469
EagI CGGCCG 1 cut(s) 469
Eam1104I CTCTTC 2 cut(s) 146, 697
EarI CTCTTC 2 cut(s) 146, 697
EclXI CGGCCG 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 1195
Eco31I GGTCTC 1 cut(s) 1154
Eco47I GGWCC 3 cut(s) 134, 775, 902
Eco52I CGGCCG 1 cut(s) 469
Eco72I CACGTG 1 cut(s) 1283
Eco88I CYCGRG 1 cut(s) 1170
EcoNI CCTNNNNNAGG 1 cut(s) 909
EcoO109I RGGNCCY 2 cut(s) 134, 775
EcoRI GAATTC 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 676, 777
EcoT14I CCWWGG 1 cut(s) 1195
ErhI CCWWGG 1 cut(s) 1195
FaeI CATG 7 cut(s) 133, 323, 545, 551, 951, 1016, 1069
FalI AAGNNNNNCTT 2 cut(s) 1337, 1369
FaqI GGGAC 2 cut(s) 583, 698
FatI CATG 7 cut(s) 129, 319, 541, 547, 947, 1012, 1065
FauI CCCGC 1 cut(s) 724
FauNDI CATATG 1 cut(s) 1036
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 6 cut(s) 96, 420, 653, 743, 1152, 1212
FokI GGATG 3 cut(s) 95, 536, 1212
Fsp4HI GCNGC 6 cut(s) 96, 420, 653, 743, 1152, 1212
FspBI CTAG 1 cut(s) 359
FspI TGCGCA 2 cut(s) 741, 1426
GlaI GCGC 2 cut(s) 741, 1426
GluI GCNGC 6 cut(s) 96, 420, 653, 743, 1152, 1212
GsuI CTGGAG 2 cut(s) 699, 962
HaeIII GGCC 3 cut(s) 465, 471, 974
HapII CCGG 2 cut(s) 102, 468
HgaI GACGC 1 cut(s) 87
HhaI GCGC 2 cut(s) 742, 1427
Hin1II CATG 7 cut(s) 133, 323, 545, 551, 951, 1016, 1069
Hin6I GCGC 2 cut(s) 740, 1425
HinP1I GCGC 2 cut(s) 740, 1425
HincII GTYRAC 1 cut(s) 855
HindII GTYRAC 1 cut(s) 855
HinfI GANTC 2 cut(s) 107, 1333
HpaII CCGG 2 cut(s) 102, 468
HphI GGTGA 3 cut(s) 56, 707, 932
Hpy166II GTNNAC 3 cut(s) 396, 610, 855
Hpy188I TCNGA 6 cut(s) 141, 370, 381, 534, 1265, 1270
Hpy188III TCNNGA 9 cut(s) 102, 334, 410, 512, 723, 866, 941, 1253, 1337
Hpy8I GTNNAC 3 cut(s) 396, 610, 855
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 4 cut(s) 203, 207, 798, 983
HpyCH4III ACNGT 3 cut(s) 17, 445, 489
HpyCH4IV ACGT 5 cut(s) 499, 606, 1017, 1081, 1282
HpyCH4V TGCA 9 cut(s) 356, 396, 422, 809, 1048, 1151, 1205, 1288, 1316
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 300, 353, 462, 1148, 1211
HpyF3I CTNAG 7 cut(s) 138, 437, 563, 647, 929, 1119, 1185
HpySE526I ACGT 5 cut(s) 499, 606, 1017, 1081, 1282
Hsp92II CATG 7 cut(s) 133, 323, 545, 551, 951, 1016, 1069
HspAI GCGC 2 cut(s) 740, 1425
Kpn2I TCCGGA 1 cut(s) 101
Kzo9I GATC 4 cut(s) 63, 273, 781, 1265
LguI GCTCTTC 1 cut(s) 146
Lsp1109I GCAGC 6 cut(s) 82, 406, 664, 754, 1163, 1198
LweI GCATC 3 cut(s) 267, 728, 1198
MaeI CTAG 1 cut(s) 359
MaeII ACGT 5 cut(s) 499, 606, 1017, 1081, 1282
MaeIII GTNAC 1 cut(s) 19
MalI GATC 4 cut(s) 65, 275, 783, 1267
MboI GATC 4 cut(s) 63, 273, 781, 1265
MboII GAAGA 6 cut(s) 163, 490, 631, 714, 776, 1345
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 3 cut(s) 158, 349, 398
MmeI TCCRAC 1 cut(s) 687
MroI TCCGGA 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 914
MseI TTAA 3 cut(s) 935, 954, 1230
MslI CAYNNNNRTG 3 cut(s) 161, 546, 564
MspA1I CMGCKG 1 cut(s) 1154
MspI CCGG 2 cut(s) 102, 468
MspR9I CCNGG 3 cut(s) 468, 678, 779
Mva1269I GAATGC 2 cut(s) 329, 1248
MvaI CCWGG 2 cut(s) 678, 779
MwoI GCNNNNNNNGC 6 cut(s) 122, 300, 353, 462, 1148, 1211
NciI CCSGG 1 cut(s) 468
NdeI CATATG 1 cut(s) 1036
NdeII GATC 4 cut(s) 63, 273, 781, 1265
NlaIII CATG 7 cut(s) 133, 323, 545, 551, 951, 1016, 1069
NlaIV GGNNCC 3 cut(s) 135, 218, 466
NsbI TGCGCA 2 cut(s) 741, 1426
NspI RCATGY 1 cut(s) 951
PciI ACATGT 1 cut(s) 947
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 269
PctI GAATGC 2 cut(s) 329, 1248
PdmI GAANNNNTTC 1 cut(s) 914
PfeI GAWTC 2 cut(s) 107, 1333
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 6 cut(s) 97, 421, 654, 744, 1153, 1213
Ple19I CGATCG 1 cut(s) 276
PmaCI CACGTG 1 cut(s) 1283
PmlI CACGTG 1 cut(s) 1283
Ppu21I YACGTR 2 cut(s) 500, 1283
PpuMI RGGWCCY 2 cut(s) 134, 775
PscI ACATGT 1 cut(s) 947
PsiI TTATAA 1 cut(s) 1299
Psp5II RGGWCCY 2 cut(s) 134, 775
Psp6I CCWGG 2 cut(s) 676, 777
PspCI CACGTG 1 cut(s) 1283
PspGI CCWGG 2 cut(s) 676, 777
PspN4I GGNNCC 3 cut(s) 135, 218, 466
PspPI GGNCC 4 cut(s) 134, 464, 775, 902
PspPPI RGGWCCY 2 cut(s) 134, 775
PstNI CAGNNNCTG 1 cut(s) 1211
PsuI RGATCY 1 cut(s) 781
PvuI CGATCG 1 cut(s) 276
PvuII CAGCTG 1 cut(s) 1154
RsaI GTAC 2 cut(s) 498, 556
RsaNI GTAC 2 cut(s) 497, 555
RseI CAYNNNNRTG 3 cut(s) 161, 546, 564
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 3 cut(s) 935, 954, 1230
SatI GCNGC 6 cut(s) 96, 420, 653, 743, 1152, 1212
Sau3AI GATC 4 cut(s) 63, 273, 781, 1265
Sau96I GGNCC 4 cut(s) 134, 464, 775, 902
ScrFI CCNGG 3 cut(s) 468, 678, 779
SduI GDGCHC 3 cut(s) 158, 349, 398
SfaNI GCATC 3 cut(s) 267, 728, 1198
SinI GGWCC 3 cut(s) 134, 775, 902
SmiMI CAYNNNNRTG 3 cut(s) 161, 546, 564
SmlI CTYRAG 1 cut(s) 1243
SmoI CTYRAG 1 cut(s) 1243
SsiI CCGC 2 cut(s) 327, 717
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 3 cut(s) 466, 676, 777
StyI CCWWGG 1 cut(s) 1195
TaaI ACNGT 3 cut(s) 17, 445, 489
TaiI ACGT 5 cut(s) 502, 609, 1020, 1084, 1285
TaqI TCGA 4 cut(s) 33, 333, 409, 1071
TfiI GAWTC 2 cut(s) 107, 1333
Tru1I TTAA 3 cut(s) 935, 954, 1230
Tru9I TTAA 3 cut(s) 935, 954, 1230
TscAI CASTG 5 cut(s) 151, 301, 403, 571, 742
TseI GCWGC 6 cut(s) 95, 419, 652, 742, 1151, 1211
TspDTI ATGAA 8 cut(s) 179, 212, 398, 540, 558, 564, 972, 1346
TspRI CASTG 5 cut(s) 151, 301, 403, 571, 742
VneI GTGCAC 1 cut(s) 394
VpaK11BI GGWCC 3 cut(s) 134, 775, 902
XagI CCTNNNNNAGG 1 cut(s) 909
XapI RAATTY 5 cut(s) 47, 507, 747, 842, 977
XceI RCATGY 1 cut(s) 951
XmiI GTMKAC 1 cut(s) 609
XmnI GAANNNNTTC 1 cut(s) 914
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.