FvH4_3g11890

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000525
Physical Location & Seq
Reverse (-)
7019733 .. 7026775
7043 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11890.t1

Sequence Viewer

Length: 2496 bp
ATGGCGGCGGAGGATTGCTACGCCACGCAGCTGATCGACGGCGACGGCGGATTCAATGCCGCCGGCCTCGACCGATTCGTCAAGGAGGCCAAGGTTATTGACTGCGGGCTCTCGTACGCCGTCGTCGCCATTATGGGGCCGCAGAGCAGCGGGAAGAGTACTTTGATGAATCAGCTGTTTCATACTAAGTTCAGGGAGATGGATGCGTTTACAGGAAGGAGCCAAACGACGAAGGGGGTTTGGATTGCCAAGTGTGTCGGCATTGAGCCGTGCACTATAGGCATGGATTTGGAGGGTACTGATGGCAGGGAGAGAGGAGAGGATGATACTACGTTTGAGAAACAAAGCGCGTTATTTGCGCTGGCTGTTTCGGACATTGTGCTGATTAATATGTGGTGCCATGATATTGGTCGGGAGCAGGCTGCAAACAAACCTTTACTAAAGACAGTTTTTCAGGTCATGATGCGTTTATTTAGCCCACGTAAAACGACGTTGTTGTTTGTTATACGCGACAAAACAAAGACCCCATTTGAGTATCTGGAGCCTGTTTTAAGGGAAGATATACAAAAGATATGGGATTCAGTTCCAAAGCCCCAAGCCCATAAAAGCACTCCGCTCAGCGAATTTTTCACTGTAGAAGTTGTTGCTTTGTCCAGTTATGAAGAGAAGGAGGATAAATTTAAAGAGGAGGTTGCTGAATTGCGGCAGCGTTTTTTCCATTCTATTTCTCCAGGAGGACTTGCTGGTGATAGACGGGGTGTTGTCCCTGCCTCTGGATTTTCATTTAGTGCACAACAGATCTGGAAAGTAATCAAAGAGAACAAAGACCTGGATCTTCCTGCTCACAAGGTTATGGTTGCTACTGTTCGGTGTGAAGAGATTGCTAATGAGAAATTTACTCACTTGACCTCTAATGAGGATTGGTTGGCATTAGAAGAAGCTGTACAAAGTGGTCCAGTACCAGGTTTTGGTAAACAGCTCAGCTCCATCCTAGACACCTATCTTTCTGAATATGACATGGAGGCCATCTACTTTGATGAAGGTGTAAGGAATTCAAGACGACACCAATTGGAAACAAGAGCATTGGATTTTGTGTTCCCTGCGTACAATACCATGCTCGGGCATCTACGTTCTAACGCTTTGGAAAATTTTAAAGTGAGATTGGAGCAGTCATTAAGCAACGGGGAAGGATTTGCCTCATCTGTGCGAACCTGTACGGAAAGATGTGTGCTCGAGTTTGACCGTGGATGTGCAGATGCTGCTGTACAGCAGGCTAATTGGGATACTTCAAGAGTTCGGGAAAAGCTCCGACGTGATTTAGATGCACATGCCTCATCTGTTCGTAGTACAAAGTTGTCGGAATTGAATATCACTTATGAGAAAAAACTCTCAGCTTCTTTAACTGAACCTGTGGGGGCTCTACTTGAAGCCGGAGGAGAAGACCCCTGGGCTTCGATAAGGAAACTTCTTAATCGTGAGACTGAAGCTGCAGTGTCAGAGTTCTTAAAAGCAGTTGTTGGTTTTGAGTTAGACAAAGTAACAATTGAGAAAATGGTGCAAAATTTAAGGGATTATGCAAGAAATGTGGTGGAGACAAAAGCAAGAGAAGAGGCTGGGAAAGCTCTGATCCACATGAAGGATCGGTTTTCAACAGTCTTCAATTATGACAGTGATTCAATGCCTAGGGTATGGACTGGGAAGGAAGACATTAAAACCATAACCAAAGATGCCCGTTCTGCGTCTCTCAAGATTTTATCGGTTAGAGCTGCTATCCGTTTGGATGAGAAGCCTGATAATATTGAAAAAGTTATATTTTCTTCTCTAATGGATGGAACTGGTACTGCTTTGTCCACACAAGATAAGAGCACAAGAGCTTTAGCAGATCCTCTTGCAACAAGCACTTGGGAGGAGGTTTCTCCAAAAGATACACTGATTACACCAGTGCAATGCAAATCACTTTGGAGACAGTTCAAATCAGAAACTGAGTATACTGTCACTCAAGCTATTTCAGCACAGGAGGCTCACAAGCGGAGTAACAACTGGTTGCCTCCTCCATGGGCCATTATGGCAATGATTCTTCTTGGTTTCAACGAATTTATGATGCTTTTAAGGAACCCACTCTACCTATTGGTTCTTTTTGTTGCATATTTACTTACAAAGGCCTTGTGGGTACAGATGGACATTGCGGGAGAGTTCCGACATGGCACTATCTCTGGTATACTTTCCATTTCAACAAAGTTTCTTCCCACTGTTATGGATATCCTGAGACGACTTGCAGAAGAAGCTCAAGGGCGTCCAACACCTGAAGCGCCTAGACAGCCAGTTTCTCTTGCTTCTCAAAGTTATGGAAGTGAAACACCTCAGCCAAATCTATACACAAGCTCAGTTCCTGAGTCGTCCGTATCATCTAGTGTTTCATATTCTGATAGTGGCATGGAATACTCGAGCCCTAACTTGGCACGCAGGCGAGCCACAAACAACCAGGAGATGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

832

Amino Acids

93.07

Weight (kDa)

5.62

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RHD3_GTPase PF05879 45 - 280 5.1e-113 Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
Sey1_3HB PF20428 322 - 761 7.7e-140 Sey1 three-helix bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 396
AccB7I CCANNNNNTGG 2 cut(s) 968, 2488
AccBSI CCGCTC 1 cut(s) 616
AccI GTMKAC 2 cut(s) 1988, 2218
AccII CGCG 2 cut(s) 350, 510
AclWI GGATC 4 cut(s) 840, 1621, 1647, 1877
AcsI RAATTY 7 cut(s) 623, 677, 893, 1051, 1147, 1561, 2093
AcuI CTGAAG 2 cut(s) 1503, 2325
AcyI GRCGYC 1 cut(s) 2293
AfiI CCNNNNNNNGG 8 cut(s) 135, 773, 962, 968, 1119, 1636, 2455, 2488
AjiI CACGTC 1 cut(s) 1313
AjnI CCWGG 5 cut(s) 730, 828, 961, 1445, 2481
AloI GAACNNNNNNTCC 2 cut(s) 1079, 1111
Alw21I GWGCWC 4 cut(s) 275, 793, 1233, 1868
Alw26I GTCTC 5 cut(s) 1472, 1586, 1746, 1957, 2260
Alw44I GTGCAC 2 cut(s) 271, 789
AlwI GGATC 4 cut(s) 840, 1621, 1647, 1877
AlwNI CAGNNNCTG 3 cut(s) 1259, 1982, 2390
Ama87I CYCGRG 3 cut(s) 1118, 1232, 2443
AoxI GGCC 6 cut(s) 64, 87, 137, 1023, 2058, 2160
ApaLI GTGCAC 2 cut(s) 271, 789
ApeKI GCWGC 7 cut(s) 28, 147, 422, 706, 1259, 1487, 1766
ApoI RAATTY 7 cut(s) 623, 677, 893, 1051, 1147, 1561, 2093
AseI ATTAAT 1 cut(s) 387
AspA2I CCTAGG 1 cut(s) 1682
AspLEI GCGC 3 cut(s) 350, 361, 2311
AspS9I GGNCC 3 cut(s) 137, 953, 2058
AsuHPI GGTGA 1 cut(s) 758
AvaI CYCGRG 3 cut(s) 1118, 1232, 2443
AvaII GGWCC 1 cut(s) 953
AvrII CCTAGG 1 cut(s) 1682
BaeGI GKGCMC 2 cut(s) 275, 793
BanI GGYRCC 1 cut(s) 396
BanII GRGCYC 3 cut(s) 111, 1420, 2450
BarI GAAGNNNNNNTAC 2 cut(s) 927, 959
BbsI GAAGAC 3 cut(s) 1446, 1648, 1710
Bbv12I GWGCWC 4 cut(s) 275, 793, 1233, 1868
BbvCI CCTCAGC 1 cut(s) 2361
BbvI GCAGC 7 cut(s) 40, 159, 409, 718, 1246, 1474, 1753
BccI CCATC 7 cut(s) 193, 296, 995, 1034, 1823, 2170, 2482
BceAI ACGGC 4 cut(s) 55, 61, 104, 253
BciT130I CCWGG 5 cut(s) 732, 830, 963, 1447, 2483
BciVI GTATCC 1 cut(s) 1276
BcoDI GTCTC 5 cut(s) 1472, 1586, 1746, 1957, 2260
BfaI CTAG 4 cut(s) 992, 1683, 2313, 2409
BfmI CTRYAG 3 cut(s) 276, 633, 1488
BfoI RGCGCY 1 cut(s) 2312
BfuI GTATCC 1 cut(s) 1276
BglI GCCNNNNNGGC 1 cut(s) 2066
BglII AGATCT 1 cut(s) 798
BlnI CCTAGG 1 cut(s) 1682
BlpI GCTNAGC 2 cut(s) 617, 980
BmcAI AGTACT 1 cut(s) 160
Bme1390I CCNGG 5 cut(s) 732, 830, 963, 1447, 2483
Bme18I GGWCC 1 cut(s) 953
BmeT110I CYCGRG 3 cut(s) 1118, 1232, 2443
BmgBI CACGTC 1 cut(s) 1313
BmgT120I GGNCC 3 cut(s) 137, 953, 2058
BmiI GGNNCC 5 cut(s) 138, 221, 398, 543, 2114
BmrFI CCNGG 5 cut(s) 732, 830, 963, 1447, 2483
BmrI ACTGGG 1 cut(s) 1704
BmsI GCATC 7 cut(s) 193, 453, 1132, 1246, 1312, 1717, 2091
BmuI ACTGGG 1 cut(s) 1704
BpiI GAAGAC 3 cut(s) 1446, 1648, 1710
BpmI CTGGAG 2 cut(s) 560, 714
Bpu10I CCTNAGC 1 cut(s) 2361
Bpu1102I GCTNAGC 2 cut(s) 617, 980
BpuEI CTTGAG 3 cut(s) 1730, 1983, 2271
BsaAI YACGTR 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 2293
BsaJI CCNNGG 6 cut(s) 90, 1243, 1445, 1446, 1682, 2054
Bsc4I CCNNNNNNNGG 8 cut(s) 135, 773, 962, 968, 1119, 1636, 2455, 2488
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 7 cut(s) 654, 956, 1699, 1840, 1940, 2045, 2321
Bse3DI GCAATG 3 cut(s) 1952, 2076, 2181
BseBI CCWGG 5 cut(s) 732, 830, 963, 1447, 2483
BseDI CCNNGG 6 cut(s) 90, 1243, 1445, 1446, 1682, 2054
BseGI GGATG 6 cut(s) 208, 328, 987, 1253, 1786, 1834
BseLI CCNNNNNNNGG 8 cut(s) 135, 773, 962, 968, 1119, 1636, 2455, 2488
BseMI GCAATG 3 cut(s) 1952, 2076, 2181
BseMII CTCAG 8 cut(s) 631, 994, 1404, 1974, 2255, 2375, 2382, 2397
BseNI ACTGG 7 cut(s) 654, 956, 1699, 1840, 1940, 2045, 2321
BseRI GAGGAG 5 cut(s) 330, 701, 1449, 1922, 2040
BseSI GKGCMC 2 cut(s) 275, 793
BseXI GCAGC 7 cut(s) 40, 159, 409, 718, 1246, 1474, 1753
BseYI CCCAGC 1 cut(s) 1613
BsgI GTGCAG 1 cut(s) 1272
Bsh1236I CGCG 2 cut(s) 350, 510
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 6 cut(s) 66, 89, 139, 1025, 2060, 2162
BshNI GGYRCC 1 cut(s) 396
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 4 cut(s) 275, 793, 1233, 1868
BsiHKCI CYCGRG 3 cut(s) 1118, 1232, 2443
BsiSI CCGG 2 cut(s) 63, 1431
BsiWI CGTACG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 749
BslI CCNNNNNNNGG 8 cut(s) 135, 773, 962, 968, 1119, 1636, 2455, 2488
BsmAI GTCTC 5 cut(s) 1472, 1586, 1746, 1957, 2260
BsmBI CGTCTC 2 cut(s) 1746, 2260
BsmFI GGGAC 1 cut(s) 749
BsnI GGCC 6 cut(s) 66, 89, 139, 1025, 2060, 2162
BsoBI CYCGRG 3 cut(s) 1118, 1232, 2443
Bsp1286I GDGCHC 7 cut(s) 111, 275, 793, 1233, 1420, 1868, 2450
Bsp1407I TGTACA 2 cut(s) 943, 1264
Bsp143I GATC 6 cut(s) 33, 798, 832, 1626, 1639, 1882
Bsp1720I GCTNAGC 2 cut(s) 617, 980
Bsp19I CCATGG 1 cut(s) 2054
BspANI GGCC 6 cut(s) 66, 89, 139, 1025, 2060, 2162
BspCNI CTCAG 8 cut(s) 630, 993, 1403, 1975, 2256, 2374, 2383, 2396
BspFNI CGCG 2 cut(s) 350, 510
BspHI TCATGA 1 cut(s) 459
BspLI GGNNCC 5 cut(s) 138, 221, 398, 543, 2114
BspMAI CTGCAG 1 cut(s) 1492
BspPI GGATC 4 cut(s) 840, 1621, 1647, 1877
BspT107I GGYRCC 1 cut(s) 396
BsrBI CCGCTC 1 cut(s) 616
BsrDI GCAATG 3 cut(s) 1952, 2076, 2181
BsrFI RCCGGY 1 cut(s) 62
BsrGI TGTACA 2 cut(s) 943, 1264
BsrI ACTGG 7 cut(s) 654, 956, 1699, 1840, 1940, 2045, 2321
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 6 cut(s) 90, 1243, 1445, 1446, 1682, 2054
BssMI GATC 6 cut(s) 33, 798, 832, 1626, 1639, 1882
BssNAI GTATAC 2 cut(s) 1989, 2219
BssNI GRCGYC 1 cut(s) 2293
BssT1I CCWWGG 3 cut(s) 90, 1682, 2054
Bst1107I GTATAC 2 cut(s) 1989, 2219
Bst2UI CCWGG 5 cut(s) 732, 830, 963, 1447, 2483
Bst4CI ACNGT 9 cut(s) 448, 634, 865, 1244, 1654, 1670, 1968, 1993, 2251
Bst6I CTCTTC 4 cut(s) 149, 657, 870, 1602
BstACI GRCGYC 1 cut(s) 2293
BstAPI GCANNNNNTGC 1 cut(s) 1259
BstAUI TGTACA 2 cut(s) 943, 1264
BstBAI YACGTR 1 cut(s) 482
BstC8I GCNNGC 8 cut(s) 64, 107, 363, 420, 1272, 2461, 2465, 2469
BstDEI CTNAG 9 cut(s) 186, 617, 980, 1390, 1983, 2264, 2361, 2383, 2391
BstDSI CCRYGG 2 cut(s) 1243, 2054
BstF5I GGATG 6 cut(s) 208, 328, 987, 1253, 1786, 1834
BstFNI CGCG 2 cut(s) 350, 510
BstH2I RGCGCY 1 cut(s) 2312
BstHHI GCGC 3 cut(s) 350, 361, 2311
BstKTI GATC 6 cut(s) 36, 801, 835, 1629, 1642, 1885
BstMAI GTCTC 5 cut(s) 1472, 1586, 1746, 1957, 2260
BstMBI GATC 6 cut(s) 33, 798, 832, 1626, 1639, 1882
BstMCI CGRYCG 1 cut(s) 73
BstNI CCWGG 5 cut(s) 732, 830, 963, 1447, 2483
BstNSI RCATGY 1 cut(s) 1331
BstSCI CCNGG 5 cut(s) 730, 828, 961, 1445, 2481
BstSFI CTRYAG 3 cut(s) 276, 633, 1488
BstSLI GKGCMC 2 cut(s) 275, 793
BstUI CGCG 2 cut(s) 350, 510
BstV1I GCAGC 7 cut(s) 40, 159, 409, 718, 1246, 1474, 1753
BstV2I GAAGAC 3 cut(s) 1446, 1648, 1710
BstX2I RGATCY 3 cut(s) 798, 832, 1882
BstXI CCANNNNNNTGG 2 cut(s) 407, 2254
BstYI RGATCY 3 cut(s) 798, 832, 1882
BstZ17I GTATAC 2 cut(s) 1989, 2219
BsuI GTATCC 1 cut(s) 1276
BsuRI GGCC 6 cut(s) 66, 89, 139, 1025, 2060, 2162
BtgI CCRYGG 2 cut(s) 1243, 2054
BtrI CACGTC 1 cut(s) 1313
BtsCI GGATG 6 cut(s) 208, 328, 987, 1253, 1786, 1834
BtsI GCAGTG 1 cut(s) 1497
BtsIMutI CAGTG 6 cut(s) 630, 1497, 1675, 1928, 1947, 2247
Cac8I GCNNGC 8 cut(s) 64, 107, 363, 420, 1272, 2461, 2465, 2469
CaiI CAGNNNCTG 3 cut(s) 1259, 1982, 2390
CciI TCATGA 1 cut(s) 459
CfoI GCGC 3 cut(s) 350, 361, 2311
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 3 cut(s) 137, 953, 2058
CseI GACGC 2 cut(s) 1728, 2282
CsiI ACCWGGT 1 cut(s) 961
CspCI CAANNNNNGTGG 2 cut(s) 1566, 1601
DdeI CTNAG 9 cut(s) 186, 617, 980, 1390, 1983, 2264, 2361, 2383, 2391
DpnI GATC 6 cut(s) 35, 800, 834, 1628, 1641, 1884
DpnII GATC 6 cut(s) 33, 798, 832, 1626, 1639, 1882
DraI TTTAAA 2 cut(s) 682, 1153
DrdI GACNNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 77
Eam1104I CTCTTC 4 cut(s) 149, 657, 870, 1602
EarI CTCTTC 4 cut(s) 149, 657, 870, 1602
EciI GGCGGA 2 cut(s) 23, 63
Eco130I CCWWGG 3 cut(s) 90, 1682, 2054
Eco147I AGGCCT 1 cut(s) 2162
Eco24I GRGCYC 3 cut(s) 111, 1420, 2450
Eco32I GATATC 1 cut(s) 2260
Eco47I GGWCC 1 cut(s) 953
Eco57I CTGAAG 2 cut(s) 1503, 2325
Eco88I CYCGRG 3 cut(s) 1118, 1232, 2443
EcoRI GAATTC 1 cut(s) 1051
EcoRII CCWGG 5 cut(s) 730, 828, 961, 1445, 2481
EcoRV GATATC 1 cut(s) 2260
EcoT14I CCWWGG 3 cut(s) 90, 1682, 2054
EcoT38I GRGCYC 3 cut(s) 111, 1420, 2450
ErhI CCWWGG 3 cut(s) 90, 1682, 2054
Esp3I CGTCTC 2 cut(s) 1746, 2260
FaqI GGGAC 1 cut(s) 749
FauI CCCGC 3 cut(s) 98, 143, 2179
FblI GTMKAC 2 cut(s) 1988, 2218
FokI GGATG 6 cut(s) 215, 335, 974, 1260, 1793, 1841
FriOI GRGCYC 3 cut(s) 111, 1420, 2450
FspBI CTAG 4 cut(s) 992, 1683, 2313, 2409
GlaI GCGC 3 cut(s) 349, 360, 2310
GsaI CCCAGC 1 cut(s) 1617
GsuI CTGGAG 2 cut(s) 560, 714
HaeII RGCGCY 1 cut(s) 2312
HaeIII GGCC 6 cut(s) 66, 89, 139, 1025, 2060, 2162
HapII CCGG 2 cut(s) 63, 1431
HgaI GACGC 2 cut(s) 1728, 2282
HhaI GCGC 3 cut(s) 350, 361, 2311
Hin1I GRCGYC 1 cut(s) 2293
Hin6I GCGC 3 cut(s) 348, 359, 2309
HinP1I GCGC 3 cut(s) 348, 359, 2309
HinfI GANTC 7 cut(s) 51, 75, 169, 578, 1673, 2074, 2393
HpaII CCGG 2 cut(s) 63, 1431
HphI GGTGA 1 cut(s) 758
Hpy166II GTNNAC 7 cut(s) 210, 273, 791, 974, 1851, 1989, 2219
Hpy188I TCNGA 9 cut(s) 373, 1009, 1310, 1360, 1498, 1626, 1978, 2198, 2425
Hpy8I GTNNAC 7 cut(s) 210, 273, 791, 974, 1851, 1989, 2219
Hpy99I CGWCG 7 cut(s) 41, 47, 125, 128, 232, 493, 1314
HpyAV CCTTC 7 cut(s) 210, 226, 661, 1034, 1181, 1630, 1693
HpyCH4III ACNGT 9 cut(s) 448, 634, 865, 1244, 1654, 1670, 1968, 1993, 2251
HpyCH4IV ACGT 5 cut(s) 332, 481, 491, 1129, 1312
HpyF3I CTNAG 9 cut(s) 186, 617, 980, 1390, 1983, 2264, 2361, 2383, 2391
HpySE526I ACGT 5 cut(s) 332, 481, 491, 1129, 1312
Hsp92I GRCGYC 1 cut(s) 2293
HspAI GCGC 3 cut(s) 348, 359, 2309
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Kzo9I GATC 6 cut(s) 33, 798, 832, 1626, 1639, 1882
LmnI GCTCC 6 cut(s) 219, 415, 541, 989, 1165, 1311
Lsp1109I GCAGC 7 cut(s) 40, 159, 409, 718, 1246, 1474, 1753
LweI GCATC 7 cut(s) 193, 453, 1132, 1246, 1312, 1717, 2091
MabI ACCWGGT 1 cut(s) 961
MaeI CTAG 4 cut(s) 992, 1683, 2313, 2409
MaeII ACGT 5 cut(s) 332, 481, 491, 1129, 1312
MaeIII GTNAC 3 cut(s) 1537, 1993, 2033
MalI GATC 6 cut(s) 35, 800, 834, 1628, 1641, 1884
MbiI CCGCTC 1 cut(s) 616
MboI GATC 6 cut(s) 33, 798, 832, 1626, 1639, 1882
MfeI CAATTG 2 cut(s) 1067, 1542
MflI RGATCY 3 cut(s) 798, 832, 1882
MhlI GDGCHC 7 cut(s) 111, 275, 793, 1233, 1420, 1868, 2450
MlyI GAGTC 1 cut(s) 2402
MmeI TCCRAC 4 cut(s) 1333, 1338, 2221, 2321
MroNI GCCGGC 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 2252
MspA1I CMGCKG 3 cut(s) 31, 150, 175
MspI CCGG 2 cut(s) 63, 1431
MspR9I CCNGG 5 cut(s) 732, 830, 963, 1447, 2483
MunI CAATTG 2 cut(s) 1067, 1542
MvaI CCWGG 5 cut(s) 732, 830, 963, 1447, 2483
MvnI CGCG 2 cut(s) 350, 510
NaeI GCCGGC 1 cut(s) 64
NcoI CCATGG 1 cut(s) 2054
NdeII GATC 6 cut(s) 33, 798, 832, 1626, 1639, 1882
NgoMIV GCCGGC 1 cut(s) 62
NlaIV GGNNCC 5 cut(s) 138, 221, 398, 543, 2114
NmuCI GTSAC 1 cut(s) 1993
NspI RCATGY 1 cut(s) 1331
PaeR7I CTCGAG 2 cut(s) 1232, 2443
PagI TCATGA 1 cut(s) 459
PasI CCCWGGG 1 cut(s) 1446
PceI AGGCCT 1 cut(s) 2162
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdiI GCCGGC 1 cut(s) 64
PfeI GAWTC 6 cut(s) 51, 75, 169, 578, 1673, 2074
Pfl23II CGTACG 1 cut(s) 114
PflMI CCANNNNNTGG 2 cut(s) 968, 2488
PfoI TCCNGGA 1 cut(s) 730
PleI GAGTC 1 cut(s) 2401
PpsI GAGTC 1 cut(s) 2401
Ppu21I YACGTR 1 cut(s) 482
PshBI ATTAAT 1 cut(s) 387
Psp6I CCWGG 5 cut(s) 730, 828, 961, 1445, 2481
PspFI CCCAGC 1 cut(s) 1613
PspGI CCWGG 5 cut(s) 730, 828, 961, 1445, 2481
PspLI CGTACG 1 cut(s) 114
PspN4I GGNNCC 5 cut(s) 138, 221, 398, 543, 2114
PspPI GGNCC 3 cut(s) 137, 953, 2058
PspXI VCTCGAGB 2 cut(s) 1232, 2443
PsrI GAACNNNNNNTAC 2 cut(s) 2105, 2137
PstI CTGCAG 1 cut(s) 1492
PstNI CAGNNNCTG 3 cut(s) 1259, 1982, 2390
PsuI RGATCY 3 cut(s) 798, 832, 1882
PvuII CAGCTG 2 cut(s) 31, 175
RseI CAYNNNNRTG 1 cut(s) 2252
Sau3AI GATC 6 cut(s) 33, 798, 832, 1626, 1639, 1882
Sau96I GGNCC 3 cut(s) 137, 953, 2058
ScaI AGTACT 1 cut(s) 160
SchI GAGTC 1 cut(s) 2402
ScrFI CCNGG 5 cut(s) 732, 830, 963, 1447, 2483
SduI GDGCHC 7 cut(s) 111, 275, 793, 1233, 1420, 1868, 2450
SexAI ACCWGGT 1 cut(s) 961
SfaNI GCATC 7 cut(s) 193, 453, 1132, 1246, 1312, 1717, 2091
SfcI CTRYAG 3 cut(s) 276, 633, 1488
Sfr274I CTCGAG 2 cut(s) 1232, 2443
SinI GGWCC 1 cut(s) 953
SlaI CTCGAG 2 cut(s) 1232, 2443
SmiMI CAYNNNNRTG 1 cut(s) 2252
SmlI CTYRAG 5 cut(s) 1232, 1745, 1998, 2286, 2443
SmoI CTYRAG 5 cut(s) 1232, 1745, 1998, 2286, 2443
SseBI AGGCCT 1 cut(s) 2162
SspI AATATT 1 cut(s) 1798
SspMI CTAG 4 cut(s) 992, 1683, 2313, 2409
StuI AGGCCT 1 cut(s) 2162
StyD4I CCNGG 5 cut(s) 730, 828, 961, 1445, 2481
StyI CCWWGG 3 cut(s) 90, 1682, 2054
TaaI ACNGT 9 cut(s) 448, 634, 865, 1244, 1654, 1670, 1968, 1993, 2251
TaiI ACGT 5 cut(s) 335, 484, 494, 1132, 1315
TaqI TCGA 5 cut(s) 36, 69, 1233, 1454, 2444
TaqII GACCGA 1 cut(s) 87
TatI WGTACW 4 cut(s) 158, 943, 1264, 1346
TauI GCSGC 4 cut(s) 8, 62, 142, 706
TfiI GAWTC 6 cut(s) 51, 75, 169, 578, 1673, 2074
TscAI CASTG 6 cut(s) 637, 1497, 1675, 1935, 1947, 2254
TseFI GTSAC 1 cut(s) 1993
TseI GCWGC 7 cut(s) 28, 147, 422, 706, 1259, 1487, 1766
Tsp45I GTSAC 1 cut(s) 1993
TspDTI ATGAA 7 cut(s) 170, 182, 675, 771, 1053, 1649, 2406
TspGWI ACGGA 3 cut(s) 1232, 1763, 2389
TspRI CASTG 6 cut(s) 637, 1497, 1675, 1935, 1947, 2254
Van91I CCANNNNNTGG 2 cut(s) 968, 2488
VneI GTGCAC 2 cut(s) 271, 789
VpaK11BI GGWCC 1 cut(s) 953
VspI ATTAAT 1 cut(s) 387
XapI RAATTY 7 cut(s) 623, 677, 893, 1051, 1147, 1561, 2093
XceI RCATGY 1 cut(s) 1331
XhoI CTCGAG 2 cut(s) 1232, 2443
XmaJI CCTAGG 1 cut(s) 1682
XmiI GTMKAC 2 cut(s) 1988, 2218
XspI CTAG 4 cut(s) 992, 1683, 2313, 2409
ZrmI AGTACT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.