Rh5AG390000

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000525
Physical Location & Seq
Reverse (-)
67456465 .. 67461019
4555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG390000.1

Sequence Viewer

Length: 315 bp
ATGTTGAAGACTACACCTTTGCCAAAGCTCTTTAAGACTCTTCAGATCTCCGACTCCGATGAATATGACTCCAAATCGAGGGCGAGATCGTTAGGAAGCCTTGGGACTCGCCGTCGTCATAGGACTCAACATCGTCAGGCTTGTGTTTTTGCTCAGAAGCCATGGAACACGATGCACTACGCGGTGGTGAGTACCACCGGTGCCATCGGCAAGCTCAACGAGGTCGAGATCGAGTCTGGCGAGGTCTTGTACCCCGACCTCAATAAAGGTGAGAAAGCATTGCACCTCTTATCCATTCTATTGACAGTGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

104

Amino Acids

11.69

Weight (kDa)

9.61

Isoelectric Point (pI)

60.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AccII CGCG 1 cut(s) 182
AciI CCGC 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 2 cut(s) 193, 251
AfiI CCNNNNNNNGG 1 cut(s) 78
AgeI ACCGGT 1 cut(s) 197
AgsI TTSAA 1 cut(s) 7
AhdI GACNNNNNGTC 1 cut(s) 111
AluBI AGCT 2 cut(s) 28, 214
AluI AGCT 2 cut(s) 28, 214
ArsI GACNNNNNNTTYG 1 cut(s) 33
AsiGI ACCGGT 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 199, 281
BaeGI GKGCMC 1 cut(s) 312
BanI GGYRCC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 14
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 96
BglII AGATCT 1 cut(s) 45
BmeRI GACNNNNNGTC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 202
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 100, 161
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse118I RCCGGY 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 100, 161
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 167
BseSI GKGCMC 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 200
BshTI ACCGGT 1 cut(s) 197
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 3 cut(s) 45, 86, 228
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 100, 161
BssMI GATC 3 cut(s) 45, 86, 228
BssT1I CCWWGG 2 cut(s) 100, 161
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 182
BstKTI GATC 3 cut(s) 48, 89, 231
BstMBI GATC 3 cut(s) 45, 86, 228
BstSLI GKGCMC 1 cut(s) 312
BstUI CGCG 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 197
Csp6I GTAC 2 cut(s) 192, 250
CspAI ACCGGT 1 cut(s) 197
CviAII CATG 1 cut(s) 162
CviJI RGCY 5 cut(s) 28, 99, 140, 160, 214
CviKI_1 RGCY 5 cut(s) 28, 99, 140, 160, 214
CviQI GTAC 2 cut(s) 192, 250
DdeI CTNAG 1 cut(s) 153
DpnI GATC 3 cut(s) 47, 88, 230
DpnII GATC 3 cut(s) 45, 86, 228
DriI GACNNNNNGTC 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 45
Eam1105I GACNNNNNGTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 100, 161
Eco57I CTGAAG 1 cut(s) 26
EcoT14I CCWWGG 2 cut(s) 100, 161
ErhI CCWWGG 2 cut(s) 100, 161
FaeI CATG 1 cut(s) 165
FaiI YATR 3 cut(s) 66, 120, 163
FaqI GGGAC 1 cut(s) 118
FatI CATG 1 cut(s) 161
HapII CCGG 1 cut(s) 198
Hin1II CATG 1 cut(s) 165
HinfI GANTC 6 cut(s) 37, 53, 68, 106, 124, 233
HpaII CCGG 1 cut(s) 198
HphI GGTGA 2 cut(s) 199, 281
Hpy188I TCNGA 4 cut(s) 45, 52, 58, 156
Hpy188III TCNNGA 1 cut(s) 226
Hpy99I CGWCG 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 2 cut(s) 175, 283
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 1 cut(s) 165
Kzo9I GATC 3 cut(s) 45, 86, 228
LpnPI CCDG 3 cut(s) 122, 211, 222
LweI GCATC 1 cut(s) 162
MalI GATC 3 cut(s) 47, 88, 230
MboI GATC 3 cut(s) 45, 86, 228
MboII GAAGA 2 cut(s) 19, 32
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 312
MlyI GAGTC 6 cut(s) 31, 47, 62, 100, 118, 242
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 5 cut(s) 72, 214, 235, 269, 296
MseI TTAA 1 cut(s) 33
MspI CCGG 1 cut(s) 198
MvnI CGCG 1 cut(s) 182
NcoI CCATGG 1 cut(s) 161
NdeII GATC 3 cut(s) 45, 86, 228
NlaIII CATG 1 cut(s) 165
NlaIV GGNNCC 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PinAI ACCGGT 1 cut(s) 197
PleI GAGTC 6 cut(s) 31, 47, 62, 100, 118, 241
PpsI GAGTC 6 cut(s) 31, 47, 62, 100, 118, 241
PspN4I GGNNCC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 2 cut(s) 193, 251
RsaNI GTAC 2 cut(s) 192, 250
SaqAI TTAA 1 cut(s) 33
Sau3AI GATC 3 cut(s) 45, 86, 228
SchI GAGTC 6 cut(s) 31, 47, 62, 100, 118, 242
SduI GDGCHC 1 cut(s) 312
SetI ASST 8 cut(s) 19, 30, 216, 225, 246, 261, 271, 288
SfaNI GCATC 1 cut(s) 162
SgrAI CRCCGGYG 1 cut(s) 197
SsiI CCGC 1 cut(s) 182
StyI CCWWGG 2 cut(s) 100, 161
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 3 cut(s) 77, 225, 231
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 312
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.