Rh7AG381700

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000525
Physical Location & Seq
Forward (+)
49843527 .. 49848332
4806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG381700.1

Sequence Viewer

Length: 1038 bp
ATGGTTGCCAACGTTCGGTGTGAGGAGATAGCGAACGAGATATTCAATCAGTTGACAACAAATCAGGATTGGTTGAAACTGGAAGAAGCTGTCAAAATTGGTATTGTAGAAGGTTTTGGTGAAAGGGTCAGCTCAATTCTAGAGTCCTGTTTTAATCAATATGAGATGGAGACCAAGTACTTTGACCAAACTGTAAAGAACACAAAGCGACGTGACGTATTGGAGAAAAAGGCATACGAGTTTGTGCACCCAGCGTACACTACCCTGATCAACAACATACGTTTCAGAACGTTTAAAGAGTTCAAAGTGAAACTGCAACAGGCATTAGACAATAAAGAAGACATAGATGCATCTGTTCAGACCCTCACTGAGTCTTCCATTATTGAGTTTAACCATGGATGTACAGATGCTGCCATAAAAGATGCTAATTGGGATGTTTCAAGCACTCGAAATATACTTAGCTCCGATATAAAGGGGCATGCAGAAACTGCTTCCGTCTTCGAAGATTTGAAAAGAGTGAATCTCAAGGACAAGAAGGAGGCTAAGGAGCAGTTTGACAGGATGGAAAAAAAGCTTGCAGAAGAGAGAGAAAGATATGCCAAACAGCTGGCGAAACTGCAGGCGCTTAGCAACAGGGGGCCATTAGATTTTGTTGGACAGATATTTGAGGATGTCGGCAATGCAGTTGGTGGCGCTGTTGTTGTTGCAGCTAATGCCGTCGGCGGCGTTGCTGTTGATGGAGCTAATGCCGTCGCCGGCGTTGCTGTTGATGGAGCTAATGCCGTAGCCGGCGTTGCTGTTGATGGAGCTAATGCCGTAGCCGGCGTTGCTGTTGATGGAGCTAATGCCGTCGCCGGCGTTGCTGTTGATGGAGCTAATGCCGTCGCCGGCGTTGCTGTTGATGGAGCTAATGCCGTAGCCGGCGTTGCTGTTGATGGAGCTAATGCCGTCGGCGGCGCTGCTGTCGATGTAGCTAACGCCGTCGGGGGCGCAGCTGTTGATGTAGCTAACGCCGTCGGTGGCGTTCTACGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

345

Amino Acids

36.24

Weight (kDa)

4.81

Isoelectric Point (pI)

22.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sey1_3HB PF20428 37 - 179 1.4e-20 Sey1 three-helix bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 723, 954
AclI AACGTT 2 cut(s) 12, 290
AfaI GTAC 3 cut(s) 179, 257, 403
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 5 cut(s) 46, 76, 304, 441, 511
AjiI CACGTC 1 cut(s) 212
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 164
Alw44I GTGCAC 1 cut(s) 245
AlwNI CAGNNNCTG 2 cut(s) 410, 488
AoxI GGCC 1 cut(s) 638
ApaLI GTGCAC 1 cut(s) 245
ApeKI GCWGC 4 cut(s) 410, 707, 959, 992
AspLEI GCGC 4 cut(s) 625, 695, 959, 992
AspS9I GGNCC 1 cut(s) 638
AsuHPI GGTGA 1 cut(s) 131
AsuII TTCGAA 1 cut(s) 501
BaeGI GKGCMC 1 cut(s) 249
BbsI GAAGAC 3 cut(s) 345, 366, 490
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 4 cut(s) 397, 719, 946, 1004
BccI CCATC 9 cut(s) 160, 556, 731, 764, 797, 830, 863, 896, 929
BclI TGATCA 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 617
BfoI RGCGCY 3 cut(s) 626, 696, 960
BisI GCNGC 6 cut(s) 411, 708, 724, 955, 960, 993
BlpI GCTNAGC 1 cut(s) 626
BlsI GCNGC 6 cut(s) 412, 709, 725, 956, 961, 994
BmcAI AGTACT 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 1 cut(s) 639
BmsI GCATC 4 cut(s) 337, 359, 397, 412
BpiI GAAGAC 3 cut(s) 345, 366, 490
BplI GAGNNNNNCTC 2 cut(s) 507, 539
Bpu10I CCTNAGC 1 cut(s) 543
Bpu1102I GCTNAGC 1 cut(s) 626
Bpu14I TTCGAA 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 509
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse118I RCCGGY 6 cut(s) 755, 788, 821, 854, 887, 920
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 685
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 4 cut(s) 404, 439, 567, 676
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 685
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 249
BseXI GCAGC 4 cut(s) 397, 719, 946, 1004
BseYI CCCAGC 1 cut(s) 250
BshFI GGCC 1 cut(s) 640
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 6 cut(s) 756, 789, 822, 855, 888, 921
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 640
Bso31I GGTCTC 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 249
Bsp1407I TGTACA 1 cut(s) 401
Bsp143I GATC 1 cut(s) 267
Bsp1720I GCTNAGC 1 cut(s) 626
Bsp19I CCATGG 1 cut(s) 394
BspACI CCGC 2 cut(s) 723, 954
BspANI GGCC 1 cut(s) 640
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 639
BspMAI CTGCAG 1 cut(s) 621
BspT104I TTCGAA 1 cut(s) 501
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 685
BsrFI RCCGGY 6 cut(s) 755, 788, 821, 854, 887, 920
BsrGI TGTACA 1 cut(s) 401
BsrI ACTGG 1 cut(s) 84
BssAI RCCGGY 6 cut(s) 755, 788, 821, 854, 887, 920
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 394
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 576
BstAPI GCANNNNNTGC 2 cut(s) 488, 713
BstAUI TGTACA 1 cut(s) 401
BstBI TTCGAA 1 cut(s) 501
BstDEI CTNAG 4 cut(s) 369, 458, 543, 626
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 4 cut(s) 404, 439, 567, 676
BstH2I RGCGCY 3 cut(s) 626, 696, 960
BstHHI GCGC 4 cut(s) 625, 695, 959, 992
BstKTI GATC 1 cut(s) 270
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 8 cut(s) 488, 713, 761, 794, 827, 860, 893, 926
BstNSI RCATGY 1 cut(s) 482
BstSFI CTRYAG 1 cut(s) 617
BstSLI GKGCMC 1 cut(s) 249
BstV1I GCAGC 4 cut(s) 397, 719, 946, 1004
BstV2I GAAGAC 3 cut(s) 345, 366, 490
BstXI CCANNNNNNTGG 1 cut(s) 607
BsuRI GGCC 1 cut(s) 640
BtgI CCRYGG 1 cut(s) 394
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 4 cut(s) 404, 439, 567, 676
BtsIMutI CAGTG 1 cut(s) 366
CaiI CAGNNNCTG 2 cut(s) 410, 488
CfoI GCGC 4 cut(s) 625, 695, 959, 992
Cfr10I RCCGGY 6 cut(s) 755, 788, 821, 854, 887, 920
Cfr13I GGNCC 1 cut(s) 638
Csp6I GTAC 3 cut(s) 178, 256, 402
CviAII CATG 2 cut(s) 395, 479
CviQI GTAC 3 cut(s) 178, 256, 402
DdeI CTNAG 4 cut(s) 369, 458, 543, 626
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
DraI TTTAAA 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 2 cut(s) 398, 482
FatI CATG 2 cut(s) 394, 478
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 6 cut(s) 411, 708, 724, 955, 960, 993
FokI GGATG 4 cut(s) 411, 446, 574, 683
Fsp4HI GCNGC 6 cut(s) 411, 708, 724, 955, 960, 993
FspBI CTAG 1 cut(s) 140
GlaI GCGC 4 cut(s) 624, 694, 958, 991
GluI GCNGC 6 cut(s) 411, 708, 724, 955, 960, 993
GsaI CCCAGC 1 cut(s) 254
HaeII RGCGCY 3 cut(s) 626, 696, 960
HaeIII GGCC 1 cut(s) 640
HapII CCGG 6 cut(s) 756, 789, 822, 855, 888, 921
HhaI GCGC 4 cut(s) 625, 695, 959, 992
Hin1II CATG 2 cut(s) 398, 482
Hin6I GCGC 4 cut(s) 623, 693, 957, 990
HinP1I GCGC 4 cut(s) 623, 693, 957, 990
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 3 cut(s) 143, 371, 520
HpaII CCGG 6 cut(s) 756, 789, 822, 855, 888, 921
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 3 cut(s) 54, 247, 258
Hpy188I TCNGA 3 cut(s) 287, 360, 466
Hpy188III TCNNGA 2 cut(s) 65, 140
Hpy8I GTNNAC 3 cut(s) 54, 247, 258
Hpy99I CGWCG 8 cut(s) 213, 722, 755, 854, 887, 953, 986, 1019
HpyAV CCTTC 2 cut(s) 104, 529
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 6 cut(s) 12, 211, 216, 280, 290, 1030
HpyCH4V TGCA 8 cut(s) 247, 316, 350, 482, 578, 619, 683, 707
HpyF10VI GCNNNNNNNGC 8 cut(s) 488, 713, 761, 794, 827, 860, 893, 926
HpyF3I CTNAG 4 cut(s) 369, 458, 543, 626
HpySE526I ACGT 6 cut(s) 12, 211, 216, 280, 290, 1030
Hsp92II CATG 2 cut(s) 398, 482
HspAI GCGC 4 cut(s) 623, 693, 957, 990
KroI GCCGGC 6 cut(s) 755, 788, 821, 854, 887, 920
KroNI GCCGGC 6 cut(s) 757, 790, 823, 856, 889, 922
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 1 cut(s) 267
LmnI GCTCC 9 cut(s) 467, 547, 740, 773, 806, 839, 872, 905, 938
Lsp1109I GCAGC 4 cut(s) 397, 719, 946, 1004
LweI GCATC 4 cut(s) 337, 359, 397, 412
MaeI CTAG 1 cut(s) 140
MaeII ACGT 6 cut(s) 12, 211, 216, 280, 290, 1030
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 6 cut(s) 95, 350, 366, 490, 515, 593
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 3 cut(s) 96, 135, 427
MlyI GAGTC 2 cut(s) 152, 380
MmeI TCCRAC 1 cut(s) 634
MnlI CCTC 4 cut(s) 16, 374, 532, 661
Mph1103I ATGCAT 1 cut(s) 352
MreI CGCCGGCG 3 cut(s) 755, 854, 887
MroNI GCCGGC 6 cut(s) 755, 788, 821, 854, 887, 920
MseI TTAA 3 cut(s) 153, 294, 390
MspA1I CMGCKG 2 cut(s) 607, 995
MspI CCGG 6 cut(s) 756, 789, 822, 855, 888, 921
MwoI GCNNNNNNNGC 8 cut(s) 488, 713, 761, 794, 827, 860, 893, 926
NaeI GCCGGC 6 cut(s) 757, 790, 823, 856, 889, 922
NcoI CCATGG 1 cut(s) 394
NdeII GATC 1 cut(s) 267
NgoMIV GCCGGC 6 cut(s) 755, 788, 821, 854, 887, 920
NlaIII CATG 2 cut(s) 398, 482
NlaIV GGNNCC 1 cut(s) 639
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 1 cut(s) 352
NspI RCATGY 1 cut(s) 482
NspV TTCGAA 1 cut(s) 501
PaeI GCATGC 1 cut(s) 482
PdiI GCCGGC 6 cut(s) 757, 790, 823, 856, 889, 922
PfeI GAWTC 1 cut(s) 520
PkrI GCNGC 6 cut(s) 412, 709, 725, 956, 961, 994
PleI GAGTC 2 cut(s) 151, 379
PpsI GAGTC 2 cut(s) 151, 379
Psp1406I AACGTT 2 cut(s) 12, 290
PspFI CCCAGC 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 639
PspPI GGNCC 1 cut(s) 638
PstI CTGCAG 1 cut(s) 621
PstNI CAGNNNCTG 2 cut(s) 410, 488
PvuII CAGCTG 2 cut(s) 607, 995
RsaI GTAC 3 cut(s) 179, 257, 403
RsaNI GTAC 3 cut(s) 178, 256, 402
SaqAI TTAA 3 cut(s) 153, 294, 390
SatI GCNGC 6 cut(s) 411, 708, 724, 955, 960, 993
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 1 cut(s) 638
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 2 cut(s) 152, 380
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 4 cut(s) 337, 359, 397, 412
SfcI CTRYAG 1 cut(s) 617
SfuI TTCGAA 1 cut(s) 501
SgrAI CRCCGGYG 3 cut(s) 755, 854, 887
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
SphI GCATGC 1 cut(s) 482
Sse9I AATT 3 cut(s) 96, 135, 427
SsiI CCGC 2 cut(s) 723, 954
SspMI CTAG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 6 cut(s) 15, 214, 219, 283, 293, 1033
TaqI TCGA 3 cut(s) 448, 501, 966
TasI AATT 3 cut(s) 96, 135, 427
TatI WGTACW 2 cut(s) 177, 401
TauI GCSGC 2 cut(s) 726, 957
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 3 cut(s) 153, 294, 390
Tru9I TTAA 3 cut(s) 153, 294, 390
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 4 cut(s) 410, 707, 959, 992
Tsp45I GTSAC 1 cut(s) 212
TspGWI ACGGA 1 cut(s) 484
TspRI CASTG 1 cut(s) 373
VneI GTGCAC 1 cut(s) 245
XbaI TCTAGA 1 cut(s) 139
XceI RCATGY 1 cut(s) 482
XspI CTAG 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.