Rorug05G0050200

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000525
Physical Location & Seq
Reverse (-)
4402882 .. 4404711
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0050200.1

Sequence Viewer

Length: 1125 bp
ATGGGTTCTCTCCCATCTCCACCAAGACCCTCTTCTCCACCACCATCACCAACTCATTCTCTGTCCAACTACAGAGTCTGTGTCACATTTTGCTTGAGAGAGCCCTCACCCAACTTGAACATATCCAATTGGATCGAAATCTACGACCCATCAACCAACTCTTGGACTCATGTCACCTCAATCCCTGGCCTCGTTGAGAACCACATCCTGAAAGGTTTCTCCATGGTCTCAATGGGTGATTCACTTTACATAATTGGTGGTCGGTTGTGCCACAAGGAGCTCTCTCACACTTCGGATGAGTGCAGCTCGCTTGTGGATATGGAAGTTCAAGTCTCATCATCGGTGTTGCGTTATGATGTTGCGACTGATCAATGGTCCACTTGTGCACCACTTGGTGTAGCCAGGTGTGATTTCGCCTGCACGGTTTCCGATAACAAAATCTACGTGGCGGGTGGAAAGACCACGCTGGCGTGTGCGAGAGGAATTTCGTCGGCTGAGCTGTACGACCCTCAGCTAGACAAGTGGATTCATATGCCAAACATGAGCACATTAAGGTACAAGTGCGTTGGTGTCACATGGCAAAACAAAATCTACATTCTGGGTGGATTTGCAGAGCCAGTGAGGAAAAACTCAGACGTGCCTCCTATAATGGTGCGCAGCTCTGCTGAGGTTTATGACACACAAACAAAGAAATGGGAACTGATAATTGGAATGTGGCAATTGGATGTACCACCAAATCAAATTGTTGATGTGGGCGGGAGGCTATTCAGTTCTGGGGATTGCTTCAAGCAATGGAAGGGTCATATTGAATCATATGATGGTGAACTCAACATATGGAATGAGGTTGATGGGTCTCATCTCCACAGTTTAAACTCACTGATTTCATCAGATGACGAAATGTGGGCACATAGCCAAAGGCGTTACCTAACGATGGCACCCATCGGAGATCACCTGTATTTTTTGGCGATTCATGGACTAATGGACAACGATTTGCCGAGAACAATGTCGATTGTCCATAGATTCGACACTTCTGCTACGAGTAACAATTGGACAAGCATGGAGCCAATGGAGGAGGACAGGGAGAAAGAGCTTTGTGGACATGCTTGTGTTGTTCATCTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

374

Amino Acids

41.85

Weight (kDa)

5.47

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_ATRN-LZTR1 PF24981 37 - 204 1e-10 Attractin/LZTR1 beta-propeller
Kelch_KLHDC2_KLHL20_DRC7 PF24681 72 - 235 1.3e-09 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95 PF25210 74 - 286 6e-13 FKB95, Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 110 - 204 1.4e-07 Attractin/LZTR1 beta-propeller
Beta-prop_Calicin PF13964 112 - 233 4e-10 Calicin, beta-propeller domain
NANM PF24996 121 - 204 8.5e-06 N-acetylneuraminate epimerase
Kelch_1 PF01344 134 - 182 1.4e-10 Kelch motif
Beta-prop_FBX42 PF13415 135 - 236 4.6e-08 FBX42, beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 656
AccB1I GGYRCC 1 cut(s) 934
AccB7I CCANNNNNTGG 1 cut(s) 162
AciI CCGC 2 cut(s) 449, 756
AclWI GGATC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 483
AdeI CACNNNGTG 1 cut(s) 395
AfaI GTAC 3 cut(s) 503, 557, 729
AfiI CCNNNNNNNGG 2 cut(s) 162, 931
AgsI TTSAA 4 cut(s) 118, 329, 787, 809
AjiI CACGTC 1 cut(s) 637
AjnI CCWGG 2 cut(s) 184, 401
AjuI GAANNNNNNNTTGG 4 cut(s) 16, 48, 690, 722
AluBI AGCT 6 cut(s) 280, 306, 499, 514, 660, 1090
AluI AGCT 6 cut(s) 280, 306, 499, 514, 660, 1090
Alw21I GWGCWC 3 cut(s) 282, 388, 548
Alw26I GTCTC 3 cut(s) 232, 337, 858
Alw44I GTGCAC 1 cut(s) 384
AlwI GGATC 1 cut(s) 140
AlwNI CAGNNNCTG 1 cut(s) 78
AoxI GGCC 1 cut(s) 187
ApaLI GTGCAC 1 cut(s) 384
ApeKI GCWGC 2 cut(s) 303, 657
ApoI RAATTY 1 cut(s) 483
Asp700I GAANNNNTTC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 657
AspS9I GGNCC 1 cut(s) 375
AsuHPI GGTGA 6 cut(s) 39, 99, 166, 248, 833, 941
AvaII GGWCC 1 cut(s) 375
BaeGI GKGCMC 2 cut(s) 388, 907
BanI GGYRCC 1 cut(s) 934
BanII GRGCYC 2 cut(s) 105, 282
Bbv12I GWGCWC 3 cut(s) 282, 388, 548
BbvCI CCTCAGC 2 cut(s) 510, 666
BbvI GCAGC 2 cut(s) 315, 669
BccI CCATC 7 cut(s) 22, 52, 157, 812, 842, 925, 947
BcgI CGANNNNNNTGC 2 cut(s) 1013, 1047
BciT130I CCWGG 2 cut(s) 186, 403
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 3 cut(s) 232, 337, 858
BfaI CTAG 1 cut(s) 515
BfmI CTRYAG 1 cut(s) 70
BisI GCNGC 2 cut(s) 304, 658
BlpI GCTNAGC 1 cut(s) 495
BlsI GCNGC 2 cut(s) 305, 659
Bme1390I CCNGG 2 cut(s) 186, 403
Bme18I GGWCC 1 cut(s) 375
BmgBI CACGTC 1 cut(s) 637
BmgT120I GGNCC 1 cut(s) 375
BmiI GGNNCC 2 cut(s) 936, 1062
BmrFI CCNGG 2 cut(s) 186, 403
BoxI GACNNNNGTC 1 cut(s) 170
BplI GAGNNNNNCTC 2 cut(s) 290, 322
Bpu10I CCTNAGC 2 cut(s) 510, 666
Bpu1102I GCTNAGC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 115
BsaAI YACGTR 1 cut(s) 445
BsaBI GATNNNNATC 1 cut(s) 137
BsaI GGTCTC 2 cut(s) 232, 858
BsaJI CCNNGG 2 cut(s) 184, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 931
Bse1I ACTGG 1 cut(s) 617
Bse3DI GCAATG 1 cut(s) 797
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 2 cut(s) 186, 403
BseDI CCNNGG 2 cut(s) 184, 222
BseGI GGATG 3 cut(s) 204, 301, 730
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 2 cut(s) 162, 931
BseMI GCAATG 1 cut(s) 797
BseMII CTCAG 4 cut(s) 486, 524, 645, 657
BseNI ACTGG 1 cut(s) 617
BseRI GAGGAG 1 cut(s) 1085
BseSI GKGCMC 2 cut(s) 388, 907
BseXI GCAGC 2 cut(s) 315, 669
BsgI GTGCAG 2 cut(s) 322, 403
BshFI GGCC 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 934
BsiHKAI GWGCWC 3 cut(s) 282, 388, 548
BslI CCNNNNNNNGG 2 cut(s) 162, 931
BsmAI GTCTC 3 cut(s) 232, 337, 858
BsnI GGCC 1 cut(s) 189
Bso31I GGTCTC 2 cut(s) 232, 858
Bsp1286I GDGCHC 5 cut(s) 105, 282, 388, 548, 907
Bsp143I GATC 3 cut(s) 132, 367, 946
Bsp1720I GCTNAGC 1 cut(s) 495
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 2 cut(s) 449, 756
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 4 cut(s) 487, 523, 644, 658
BspLI GGNNCC 2 cut(s) 936, 1062
BspPI GGATC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 934
BspTNI GGTCTC 2 cut(s) 232, 858
BsrDI GCAATG 1 cut(s) 797
BsrI ACTGG 1 cut(s) 617
BssECI CCNNGG 2 cut(s) 184, 222
BssMI GATC 3 cut(s) 132, 367, 946
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 186, 403
Bst4CI ACNGT 2 cut(s) 424, 866
Bst6I CTCTTC 1 cut(s) 37
BstBAI YACGTR 1 cut(s) 445
BstC8I GCNNGC 3 cut(s) 308, 418, 468
BstDEI CTNAG 5 cut(s) 495, 510, 631, 666, 1122
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 3 cut(s) 204, 301, 730
BstHHI GCGC 1 cut(s) 657
BstKTI GATC 3 cut(s) 135, 370, 949
BstMAI GTCTC 3 cut(s) 232, 337, 858
BstMBI GATC 3 cut(s) 132, 367, 946
BstNI CCWGG 2 cut(s) 186, 403
BstNSI RCATGY 1 cut(s) 1103
BstPAI GACNNNNGTC 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 184, 401
BstSFI CTRYAG 1 cut(s) 70
BstSLI GKGCMC 2 cut(s) 388, 907
BstV1I GCAGC 2 cut(s) 315, 669
BsuRI GGCC 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 222
BtrI CACGTC 1 cut(s) 637
BtsCI GGATG 3 cut(s) 204, 301, 730
BtsIMutI CAGTG 2 cut(s) 624, 875
Cac8I GCNNGC 3 cut(s) 308, 418, 468
CaiI CAGNNNCTG 1 cut(s) 78
CfoI GCGC 1 cut(s) 657
Cfr13I GGNCC 1 cut(s) 375
Csp6I GTAC 3 cut(s) 502, 556, 728
CviAII CATG 7 cut(s) 170, 223, 541, 576, 971, 1057, 1100
CviQI GTAC 3 cut(s) 502, 556, 728
DdeI CTNAG 5 cut(s) 495, 510, 631, 666, 1122
DpnI GATC 3 cut(s) 134, 369, 948
DpnII GATC 3 cut(s) 132, 367, 946
DraI TTTAAA 1 cut(s) 870
DraIII CACNNNGTG 1 cut(s) 395
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 2 cut(s) 105, 282
Eco31I GGTCTC 2 cut(s) 232, 858
Eco47I GGWCC 1 cut(s) 375
Eco53kI GAGCTC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 280
EcoRII CCWGG 2 cut(s) 184, 401
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 2 cut(s) 105, 282
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 7 cut(s) 173, 226, 544, 579, 974, 1060, 1103
FalI AAGNNNNNCTT 2 cut(s) 16, 48
FatI CATG 7 cut(s) 169, 222, 540, 575, 970, 1056, 1099
FauI CCCGC 2 cut(s) 442, 749
FauNDI CATATG 3 cut(s) 531, 814, 833
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 2 cut(s) 304, 658
FokI GGATG 3 cut(s) 191, 308, 737
FriOI GRGCYC 2 cut(s) 105, 282
Fsp4HI GCNGC 2 cut(s) 304, 658
FspBI CTAG 1 cut(s) 515
FspI TGCGCA 1 cut(s) 656
GlaI GCGC 1 cut(s) 656
GluI GCNGC 2 cut(s) 304, 658
HaeIII GGCC 1 cut(s) 189
HhaI GCGC 1 cut(s) 657
Hin1II CATG 7 cut(s) 173, 226, 544, 579, 974, 1060, 1103
Hin6I GCGC 1 cut(s) 655
HinP1I GCGC 1 cut(s) 655
HinfI GANTC 7 cut(s) 75, 166, 239, 526, 809, 967, 1020
HphI GGTGA 6 cut(s) 39, 99, 166, 248, 833, 941
Hpy166II GTNNAC 4 cut(s) 378, 386, 824, 1097
Hpy188I TCNGA 5 cut(s) 295, 430, 634, 889, 944
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 4 cut(s) 378, 386, 824, 1097
Hpy99I CGWCG 1 cut(s) 493
HpyAV CCTTC 1 cut(s) 790
HpyCH4III ACNGT 2 cut(s) 424, 866
HpyCH4IV ACGT 2 cut(s) 444, 636
HpyCH4V TGCA 4 cut(s) 303, 386, 420, 611
HpyF3I CTNAG 5 cut(s) 495, 510, 631, 666, 1122
HpySE526I ACGT 2 cut(s) 444, 636
Hsp92II CATG 7 cut(s) 173, 226, 544, 579, 974, 1060, 1103
HspAI GCGC 1 cut(s) 655
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 3 cut(s) 132, 367, 946
LmnI GCTCC 2 cut(s) 277, 1060
Lsp1109I GCAGC 2 cut(s) 315, 669
MaeI CTAG 1 cut(s) 515
MaeII ACGT 2 cut(s) 444, 636
MaeIII GTNAC 5 cut(s) 82, 172, 571, 920, 1040
MalI GATC 3 cut(s) 134, 369, 948
MboI GATC 3 cut(s) 132, 367, 946
MboII GAAGA 1 cut(s) 24
MfeI CAATTG 3 cut(s) 127, 719, 1045
MhlI GDGCHC 5 cut(s) 105, 282, 388, 548, 907
MluCI AATT 7 cut(s) 127, 252, 483, 705, 719, 741, 1045
MlyI GAGTC 2 cut(s) 84, 160
MmeI TCCRAC 1 cut(s) 90
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 2 cut(s) 551, 869
MslI CAYNNNNRTG 1 cut(s) 1104
MspR9I CCNGG 2 cut(s) 186, 403
MssI GTTTAAAC 1 cut(s) 870
MunI CAATTG 3 cut(s) 127, 719, 1045
MvaI CCWGG 2 cut(s) 186, 403
NcoI CCATGG 1 cut(s) 222
NdeI CATATG 3 cut(s) 531, 814, 833
NdeII GATC 3 cut(s) 132, 367, 946
NlaIII CATG 7 cut(s) 173, 226, 544, 579, 974, 1060, 1103
NlaIV GGNNCC 2 cut(s) 936, 1062
NmeAIII GCCGAG 1 cut(s) 1020
NmuCI GTSAC 3 cut(s) 82, 172, 571
NsbI TGCGCA 1 cut(s) 656
NspI RCATGY 1 cut(s) 1103
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 5 cut(s) 239, 526, 809, 967, 1020
PflMI CCANNNNNTGG 1 cut(s) 162
PkrI GCNGC 2 cut(s) 305, 659
PleI GAGTC 2 cut(s) 83, 160
PmeI GTTTAAAC 1 cut(s) 870
PpsI GAGTC 2 cut(s) 83, 160
Ppu21I YACGTR 1 cut(s) 445
PshAI GACNNNNGTC 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 282
Psp6I CCWGG 2 cut(s) 184, 401
PspGI CCWGG 2 cut(s) 184, 401
PspN4I GGNNCC 2 cut(s) 936, 1062
PspPI GGNCC 1 cut(s) 375
PstNI CAGNNNCTG 1 cut(s) 78
RsaI GTAC 3 cut(s) 503, 557, 729
RsaNI GTAC 3 cut(s) 502, 556, 728
RseI CAYNNNNRTG 1 cut(s) 1104
SacI GAGCTC 1 cut(s) 282
SaqAI TTAA 2 cut(s) 551, 869
SatI GCNGC 2 cut(s) 304, 658
Sau3AI GATC 3 cut(s) 132, 367, 946
Sau96I GGNCC 1 cut(s) 375
SchI GAGTC 2 cut(s) 84, 160
ScrFI CCNGG 2 cut(s) 186, 403
SduI GDGCHC 5 cut(s) 105, 282, 388, 548, 907
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 1104
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 7 cut(s) 127, 252, 483, 705, 719, 741, 1045
SsiI CCGC 2 cut(s) 449, 756
SspMI CTAG 1 cut(s) 515
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 184, 401
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 424, 866
TaiI ACGT 2 cut(s) 447, 639
TaqI TCGA 3 cut(s) 135, 1007, 1023
TasI AATT 7 cut(s) 127, 252, 483, 705, 719, 741, 1045
TfiI GAWTC 5 cut(s) 239, 526, 809, 967, 1020
Tru1I TTAA 2 cut(s) 551, 869
Tru9I TTAA 2 cut(s) 551, 869
TscAI CASTG 2 cut(s) 624, 882
TseFI GTSAC 3 cut(s) 82, 172, 571
TseI GCWGC 2 cut(s) 303, 657
Tsp45I GTSAC 3 cut(s) 82, 172, 571
TspDTI ATGAA 4 cut(s) 518, 873, 959, 1103
TspRI CASTG 2 cut(s) 624, 882
Van91I CCANNNNNTGG 1 cut(s) 162
VneI GTGCAC 1 cut(s) 384
VpaK11BI GGWCC 1 cut(s) 375
XapI RAATTY 1 cut(s) 483
XceI RCATGY 1 cut(s) 1103
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.