Rh7AG381400

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000525
Physical Location & Seq
Forward (+)
49829427 .. 49830172
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG381400.1

Sequence Viewer

Length: 393 bp
ATGGAGAAAGATTACTGCGTCACGCAACTCATCGATGGCCGTGGTGAATTCAATGCTTCTGGGATCGACATCTTCACAAAGGATGTCAACTTTGCTGCGTGTGGAGAATCTTATGCCATCGTTGCCGTCATGGGTCCTCAGAGCAGTGGGAAGAGCACTTTGATGAACCATCTTTTTCACACCGACTTCAAGGAGATGGATGGCAGAGCCGGAAGGAACCAAACAACTTTGGGCATTTGGATAGCCAAGTGCGTTGGCATTGAGCCTTTCACTATCGCCGTCGATTTGGAGGGCAGTGACGGCAGAGAGAGGGGCTCGCATGATACTGCATTCGAGAAACAAAGTGCTCTATTTGCGCTGGCAATTTCAGACATTTTGTTGATAAATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

130

Amino Acids

14.14

Weight (kDa)

4.78

Isoelectric Point (pI)

21.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
URGCP_GTPase PF25683 39 - 130 1.1e-08 URGCP-like GTPase domain
RHD3_GTPase PF05879 44 - 130 1.9e-37 Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 47
AgsI TTSAA 2 cut(s) 52, 190
Alw21I GWGCWC 2 cut(s) 158, 349
AlwI GGATC 1 cut(s) 71
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 47
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 317
Bbv12I GWGCWC 2 cut(s) 158, 349
BbvI GCAGC 1 cut(s) 82
BccI CCATC 5 cut(s) 29, 125, 177, 190, 194
BceAI ACGGC 4 cut(s) 24, 110, 263, 316
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 135, 218
BplI GAGNNNNNCTC 2 cut(s) 299, 331
Bsa29I ATCGAT 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 40
Bse8I GATNNNNATC 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 88, 205
BseJI GATNNNNATC 1 cut(s) 68
BseMII CTCAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 39
BshVI ATCGAT 1 cut(s) 33
BsiHKAI GWGCWC 2 cut(s) 158, 349
BsiSI CCGG 1 cut(s) 210
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 1 cut(s) 39
Bsp1286I GDGCHC 3 cut(s) 158, 317, 349
Bsp143I GATC 1 cut(s) 63
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 151
BspDI ATCGAT 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 135, 218
BspPI GGATC 1 cut(s) 71
BspQI GCTCTTC 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 317, 360
BstDEI CTNAG 1 cut(s) 138
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 2 cut(s) 88, 205
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 1 cut(s) 66
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 3 cut(s) 122, 300, 353
BstV1I GCAGC 1 cut(s) 82
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 1 cut(s) 39
BsuTUI ATCGAT 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 40
BtsCI GGATG 2 cut(s) 88, 205
BtsI GCAGTG 2 cut(s) 151, 301
BtsIMutI CAGTG 2 cut(s) 151, 301
Cac8I GCNNGC 2 cut(s) 317, 360
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 134
ClaI ATCGAT 1 cut(s) 33
CseI GACGC 1 cut(s) 7
CviAII CATG 2 cut(s) 130, 320
CviJI RGCY 5 cut(s) 39, 209, 245, 265, 315
CviKI_1 RGCY 5 cut(s) 39, 209, 245, 265, 315
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
EaeI YGGCCR 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 317
FaeI CATG 2 cut(s) 133, 323
FaiI YATR 4 cut(s) 114, 131, 321, 389
FatI CATG 2 cut(s) 129, 319
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 95, 212
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 96
GlaI GCGC 1 cut(s) 357
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 210
HgaI GACGC 1 cut(s) 7
HhaI GCGC 1 cut(s) 358
Hin1II CATG 2 cut(s) 133, 323
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 107
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 141, 370
Hpy188III TCNNGA 1 cut(s) 334
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 300, 353
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 2 cut(s) 133, 323
HspAI GCGC 1 cut(s) 356
Kzo9I GATC 1 cut(s) 63
LguI GCTCTTC 1 cut(s) 146
LpnPI CCDG 3 cut(s) 45, 223, 344
Lsp1109I GCAGC 1 cut(s) 82
MaeIII GTNAC 2 cut(s) 19, 296
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 2 cut(s) 64, 163
MhlI GDGCHC 3 cut(s) 158, 317, 349
MluCI AATT 2 cut(s) 47, 363
MnlI CCTC 3 cut(s) 147, 283, 303
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 329
MwoI GCNNNNNNNGC 3 cut(s) 122, 300, 353
NdeII GATC 1 cut(s) 63
NlaIII CATG 2 cut(s) 133, 323
NlaIV GGNNCC 2 cut(s) 135, 218
NmuCI GTSAC 2 cut(s) 19, 296
PciSI GCTCTTC 1 cut(s) 146
PctI GAATGC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 134
Psp5II RGGWCCY 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 135, 218
PspPI GGNCC 1 cut(s) 134
PspPPI RGGWCCY 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 161
SapI GCTCTTC 1 cut(s) 146
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 134
SduI GDGCHC 3 cut(s) 158, 317, 349
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 2 cut(s) 47, 363
TaqI TCGA 4 cut(s) 33, 66, 282, 333
TasI AATT 2 cut(s) 47, 363
TfiI GAWTC 1 cut(s) 107
TscAI CASTG 2 cut(s) 151, 301
TseFI GTSAC 2 cut(s) 19, 296
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 2 cut(s) 19, 296
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 2 cut(s) 151, 301
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.