Protein ROOT HAIR DEFECTIVE 3 homolog
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RHD3_GTPase | PF05879 | 52 - 188 | 1.3e-17 | Root hair defective 3 GTP-binding protein (RHD3) GTPase domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 19 |
| AciI | CCGC | 2 cut(s) | 105, 219 |
| AclWI | GGATC | 1 cut(s) | 274 |
| AcsI | RAATTY | 1 cut(s) | 50 |
| AfaI | GTAC | 2 cut(s) | 497, 558 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 145, 349 |
| AgsI | TTSAA | 1 cut(s) | 55 |
| AjnI | CCWGG | 1 cut(s) | 342 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 213, 245 |
| AluBI | AGCT | 1 cut(s) | 417 |
| AluI | AGCT | 1 cut(s) | 417 |
| Alw26I | GTCTC | 1 cut(s) | 434 |
| AlwI | GGATC | 1 cut(s) | 274 |
| ApeKI | GCWGC | 4 cut(s) | 45, 62, 366, 521 |
| ApoI | RAATTY | 1 cut(s) | 50 |
| AspLEI | GCGC | 2 cut(s) | 23, 67 |
| AspS9I | GGNCC | 1 cut(s) | 108 |
| AvaII | GGWCC | 1 cut(s) | 108 |
| AxyI | CCTNAGG | 1 cut(s) | 140 |
| BbsI | GAAGAC | 1 cut(s) | 253 |
| BbvI | GCAGC | 4 cut(s) | 49, 57, 378, 508 |
| BccI | CCATC | 3 cut(s) | 137, 186, 344 |
| BceAI | ACGGC | 1 cut(s) | 104 |
| BciT130I | CCWGG | 1 cut(s) | 344 |
| BcoDI | GTCTC | 1 cut(s) | 434 |
| BfmI | CTRYAG | 1 cut(s) | 418 |
| BfuAI | ACCTGC | 1 cut(s) | 19 |
| BisI | GCNGC | 4 cut(s) | 46, 63, 367, 522 |
| BlsI | GCNGC | 4 cut(s) | 47, 64, 368, 523 |
| Bme1390I | CCNGG | 1 cut(s) | 344 |
| Bme18I | GGWCC | 1 cut(s) | 108 |
| BmgT120I | GGNCC | 1 cut(s) | 108 |
| BmiI | GGNNCC | 1 cut(s) | 109 |
| BmrFI | CCNGG | 1 cut(s) | 344 |
| BmsI | GCATC | 2 cut(s) | 4, 496 |
| BpiI | GAAGAC | 1 cut(s) | 253 |
| BsaJI | CCNNGG | 1 cut(s) | 342 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 145, 349 |
| Bse118I | RCCGGY | 1 cut(s) | 191 |
| Bse21I | CCTNAGG | 1 cut(s) | 140 |
| BseBI | CCWGG | 1 cut(s) | 344 |
| BseDI | CCNNGG | 1 cut(s) | 342 |
| BseGI | GGATG | 1 cut(s) | 258 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 145, 349 |
| BseMII | CTCAG | 1 cut(s) | 154 |
| BseXI | GCAGC | 4 cut(s) | 49, 57, 378, 508 |
| BsiSI | CCGG | 1 cut(s) | 192 |
| BslFI | GGGAC | 2 cut(s) | 121, 309 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 145, 349 |
| BsmAI | GTCTC | 1 cut(s) | 434 |
| BsmFI | GGGAC | 2 cut(s) | 121, 309 |
| BsmI | GAATGC | 1 cut(s) | 221 |
| Bsp143I | GATC | 3 cut(s) | 150, 279, 453 |
| BspACI | CCGC | 2 cut(s) | 105, 219 |
| BspCNI | CTCAG | 1 cut(s) | 153 |
| BspLI | GGNNCC | 1 cut(s) | 109 |
| BspMI | ACCTGC | 1 cut(s) | 19 |
| BspPI | GGATC | 1 cut(s) | 274 |
| BsrFI | RCCGGY | 1 cut(s) | 191 |
| BssAI | RCCGGY | 1 cut(s) | 191 |
| BssECI | CCNNGG | 1 cut(s) | 342 |
| BssMI | GATC | 3 cut(s) | 150, 279, 453 |
| Bst2UI | CCWGG | 1 cut(s) | 344 |
| Bst4CI | ACNGT | 1 cut(s) | 572 |
| BstC8I | GCNNGC | 4 cut(s) | 19, 43, 519, 526 |
| BstDEI | CTNAG | 2 cut(s) | 140, 404 |
| BstF5I | GGATG | 1 cut(s) | 258 |
| BstHHI | GCGC | 2 cut(s) | 23, 67 |
| BstKTI | GATC | 3 cut(s) | 153, 282, 456 |
| BstMAI | GTCTC | 1 cut(s) | 434 |
| BstMBI | GATC | 3 cut(s) | 150, 279, 453 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 125, 134, 375 |
| BstNI | CCWGG | 1 cut(s) | 344 |
| BstNSI | RCATGY | 1 cut(s) | 521 |
| BstSCI | CCNGG | 1 cut(s) | 342 |
| BstSFI | CTRYAG | 1 cut(s) | 418 |
| BstV1I | GCAGC | 4 cut(s) | 49, 57, 378, 508 |
| BstV2I | GAAGAC | 1 cut(s) | 253 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 343 |
| Bsu36I | CCTNAGG | 1 cut(s) | 140 |
| BtgZI | GCGATG | 1 cut(s) | 322 |
| BtsCI | GGATG | 1 cut(s) | 258 |
| BveI | ACCTGC | 1 cut(s) | 19 |
| Cac8I | GCNNGC | 4 cut(s) | 19, 43, 519, 526 |
| CfoI | GCGC | 2 cut(s) | 23, 67 |
| Cfr10I | RCCGGY | 1 cut(s) | 191 |
| Cfr13I | GGNCC | 1 cut(s) | 108 |
| Csp6I | GTAC | 2 cut(s) | 496, 557 |
| CviAII | CATG | 4 cut(s) | 249, 277, 518, 578 |
| CviJI | RGCY | 5 cut(s) | 137, 195, 308, 328, 417 |
| CviKI_1 | RGCY | 5 cut(s) | 137, 195, 308, 328, 417 |
| CviQI | GTAC | 2 cut(s) | 496, 557 |
| DdeI | CTNAG | 2 cut(s) | 140, 404 |
| DpnI | GATC | 3 cut(s) | 152, 281, 455 |
| DpnII | GATC | 3 cut(s) | 150, 279, 453 |
| Eco47I | GGWCC | 1 cut(s) | 108 |
| Eco81I | CCTNAGG | 1 cut(s) | 140 |
| EcoO109I | RGGNCCY | 1 cut(s) | 108 |
| EcoRI | GAATTC | 1 cut(s) | 50 |
| EcoRII | CCWGG | 1 cut(s) | 342 |
| EcoT22I | ATGCAT | 1 cut(s) | 587 |
| FaeI | CATG | 4 cut(s) | 252, 280, 521, 581 |
| FaqI | GGGAC | 2 cut(s) | 121, 309 |
| FatI | CATG | 4 cut(s) | 248, 276, 517, 577 |
| FauI | CCCGC | 1 cut(s) | 98 |
| FauNDI | CATATG | 1 cut(s) | 35 |
| Fnu4HI | GCNGC | 4 cut(s) | 46, 63, 367, 522 |
| FokI | GGATG | 1 cut(s) | 265 |
| Fsp4HI | GCNGC | 4 cut(s) | 46, 63, 367, 522 |
| GlaI | GCGC | 2 cut(s) | 22, 66 |
| GluI | GCNGC | 4 cut(s) | 46, 63, 367, 522 |
| HapII | CCGG | 1 cut(s) | 192 |
| HhaI | GCGC | 2 cut(s) | 23, 67 |
| Hin1II | CATG | 4 cut(s) | 252, 280, 521, 581 |
| Hin6I | GCGC | 2 cut(s) | 21, 65 |
| HinP1I | GCGC | 2 cut(s) | 21, 65 |
| HinfI | GANTC | 1 cut(s) | 75 |
| HpaII | CCGG | 1 cut(s) | 192 |
| Hpy188I | TCNGA | 1 cut(s) | 234 |
| Hpy188III | TCNNGA | 2 cut(s) | 200, 512 |
| HpyAV | CCTTC | 1 cut(s) | 286 |
| HpyCH4III | ACNGT | 1 cut(s) | 572 |
| HpyCH4V | TGCA | 5 cut(s) | 241, 333, 431, 487, 585 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 125, 134, 375 |
| HpyF3I | CTNAG | 2 cut(s) | 140, 404 |
| Hsp92II | CATG | 4 cut(s) | 252, 280, 521, 581 |
| HspAI | GCGC | 2 cut(s) | 21, 65 |
| Kzo9I | GATC | 3 cut(s) | 150, 279, 453 |
| Lsp1109I | GCAGC | 4 cut(s) | 49, 57, 378, 508 |
| LweI | GCATC | 2 cut(s) | 4, 496 |
| MaeIII | GTNAC | 1 cut(s) | 572 |
| MalI | GATC | 3 cut(s) | 152, 281, 455 |
| MboI | GATC | 3 cut(s) | 150, 279, 453 |
| MboII | GAAGA | 2 cut(s) | 23, 253 |
| MluCI | AATT | 1 cut(s) | 50 |
| MnlI | CCTC | 5 cut(s) | 121, 149, 346, 368, 373 |
| Mph1103I | ATGCAT | 1 cut(s) | 587 |
| MseI | TTAA | 3 cut(s) | 90, 99, 592 |
| MslI | CAYNNNNRTG | 2 cut(s) | 170, 275 |
| MspI | CCGG | 1 cut(s) | 192 |
| MspR9I | CCNGG | 1 cut(s) | 344 |
| Mva1269I | GAATGC | 1 cut(s) | 221 |
| MvaI | CCWGG | 1 cut(s) | 344 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 125, 134, 375 |
| NdeI | CATATG | 1 cut(s) | 35 |
| NdeII | GATC | 3 cut(s) | 150, 279, 453 |
| NlaIII | CATG | 4 cut(s) | 252, 280, 521, 581 |
| NlaIV | GGNNCC | 1 cut(s) | 109 |
| NsiI | ATGCAT | 1 cut(s) | 587 |
| NspI | RCATGY | 1 cut(s) | 521 |
| PaeI | GCATGC | 1 cut(s) | 521 |
| PctI | GAATGC | 1 cut(s) | 221 |
| PfeI | GAWTC | 1 cut(s) | 75 |
| PkrI | GCNGC | 4 cut(s) | 47, 64, 368, 523 |
| PpuMI | RGGWCCY | 1 cut(s) | 108 |
| Psp5II | RGGWCCY | 1 cut(s) | 108 |
| Psp6I | CCWGG | 1 cut(s) | 342 |
| PspGI | CCWGG | 1 cut(s) | 342 |
| PspN4I | GGNNCC | 1 cut(s) | 109 |
| PspPI | GGNCC | 1 cut(s) | 108 |
| PspPPI | RGGWCCY | 1 cut(s) | 108 |
| RsaI | GTAC | 2 cut(s) | 497, 558 |
| RsaNI | GTAC | 2 cut(s) | 496, 557 |
| RseI | CAYNNNNRTG | 2 cut(s) | 170, 275 |
| SaqAI | TTAA | 3 cut(s) | 90, 99, 592 |
| SatI | GCNGC | 4 cut(s) | 46, 63, 367, 522 |
| Sau3AI | GATC | 3 cut(s) | 150, 279, 453 |
| Sau96I | GGNCC | 1 cut(s) | 108 |
| ScrFI | CCNGG | 1 cut(s) | 344 |
| SetI | ASST | 6 cut(s) | 33, 113, 384, 419, 535, 558 |
| SfaNI | GCATC | 2 cut(s) | 4, 496 |
| SfcI | CTRYAG | 1 cut(s) | 418 |
| SinI | GGWCC | 1 cut(s) | 108 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 170, 275 |
| SphI | GCATGC | 1 cut(s) | 521 |
| Sse9I | AATT | 1 cut(s) | 50 |
| SsiI | CCGC | 2 cut(s) | 105, 219 |
| StyD4I | CCNGG | 1 cut(s) | 342 |
| TaaI | ACNGT | 1 cut(s) | 572 |
| TaqI | TCGA | 2 cut(s) | 186, 511 |
| TasI | AATT | 1 cut(s) | 50 |
| TfiI | GAWTC | 1 cut(s) | 75 |
| Tru1I | TTAA | 3 cut(s) | 90, 99, 592 |
| Tru9I | TTAA | 3 cut(s) | 90, 99, 592 |
| TseI | GCWGC | 4 cut(s) | 45, 62, 366, 521 |
| TspDTI | ATGAA | 3 cut(s) | 20, 188, 221 |
| VpaK11BI | GGWCC | 1 cut(s) | 108 |
| XapI | RAATTY | 1 cut(s) | 50 |
| XceI | RCATGY | 1 cut(s) | 521 |
| Zsp2I | ATGCAT | 1 cut(s) | 587 |