Rorug05G0050100

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000525
Physical Location & Seq
Reverse (-)
4393395 .. 4396669
3275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0050100.1

Sequence Viewer

Length: 459 bp
ATGGTTGGGCAAGAACATAGCTTCCAGTGGCCTCCAATTGGAGCACCACTAAATAATATGCAGCAGCAGAGAGATGAGCATATGAGTCCCTTTAATTCTTCAGTCAATGCGGTGTCGTTTGGTTTTGTAGCCACTGCCATTCTCATCTCCATGTTCTTAGTCATGGCCATCTTTGAAAGATTCCTCAGACCCACATCGCCGGATTTCTCGCCGTCCGGCCGCCGGAGAAGTGGAGATCTTGAGGCCCAGTTGGAGTTTAATGGAAAACTTGGTTACCCATCACCCAAAATGTCTGTGTATGCAAGTGGAGTTTCTGTTTTGATGCCTGGAGATGACATTCCGTCCTACATTGCACACCCAGCGCCAGTGCCTTGCCCTCCCGAACGAATGTTTTGGCCTCCACACCAACACATTTCATTGCCCAATCCCGCCACCAACTCGAGCCTGAGCTCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

152

Amino Acids

16.67

Weight (kDa)

6.16

Isoelectric Point (pI)

71.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 110, 220, 429
AcoI YGGCCR 2 cut(s) 165, 217
AcuI CTGAAG 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 38, 222
AgsI TTSAA 1 cut(s) 176
AhdI GACNNNNNGTC 1 cut(s) 340
AjnI CCWGG 1 cut(s) 325
AloI GAACNNNNNNTCC 1 cut(s) 38
AluBI AGCT 2 cut(s) 21, 450
AluI AGCT 2 cut(s) 21, 450
Alw21I GWGCWC 2 cut(s) 46, 452
Ama87I CYCGRG 1 cut(s) 439
AoxI GGCC 5 cut(s) 29, 165, 217, 243, 395
ApeKI GCWGC 2 cut(s) 61, 64
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 273
AvaI CYCGRG 1 cut(s) 439
BalI TGGCCA 1 cut(s) 167
BanII GRGCYC 1 cut(s) 452
Bbv12I GWGCWC 2 cut(s) 46, 452
BbvI GCAGC 2 cut(s) 73, 76
BccI CCATC 2 cut(s) 176, 286
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 365
BglII AGATCT 1 cut(s) 235
BisI GCNGC 3 cut(s) 62, 65, 220
BlsI GCNGC 3 cut(s) 63, 66, 221
Bme1390I CCNGG 1 cut(s) 327
BmeRI GACNNNNNGTC 1 cut(s) 340
BmeT110I CYCGRG 1 cut(s) 439
BmgT120I GGNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 327
BmrI ACTGGG 1 cut(s) 241
BmsI GCATC 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 348
Bpu10I CCTNAGC 2 cut(s) 446, 451
BpuEI CTTGAG 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 222
Bse1I ACTGG 3 cut(s) 25, 247, 365
Bse3DI GCAATG 2 cut(s) 348, 416
BseBI CCWGG 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 38, 222
BseMI GCAATG 2 cut(s) 348, 416
BseMII CTCAG 2 cut(s) 199, 437
BseNI ACTGG 3 cut(s) 25, 247, 365
BseX3I CGGCCG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 73, 76
BseYI CCCAGC 1 cut(s) 358
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 5 cut(s) 31, 167, 219, 245, 397
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 2 cut(s) 46, 452
BsiHKCI CYCGRG 1 cut(s) 439
BsiSI CCGG 3 cut(s) 200, 216, 223
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 38, 222
BsmFI GGGAC 1 cut(s) 72
BsnI GGCC 5 cut(s) 31, 167, 219, 245, 397
BsoBI CYCGRG 1 cut(s) 439
Bsp1286I GDGCHC 2 cut(s) 46, 452
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 3 cut(s) 110, 220, 429
BspANI GGCC 5 cut(s) 31, 167, 219, 245, 397
BspCNI CTCAG 2 cut(s) 198, 438
BsrDI GCAATG 2 cut(s) 348, 416
BsrI ACTGG 3 cut(s) 25, 247, 365
BssMI GATC 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 327
BstDEI CTNAG 4 cut(s) 157, 185, 446, 451
BstEII GGTNACC 1 cut(s) 272
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 1 cut(s) 327
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 73, 76
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BstZI CGGCCG 1 cut(s) 217
BsuRI GGCC 5 cut(s) 31, 167, 219, 245, 397
BtgZI GCGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 3 cut(s) 32, 132, 372
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 244
CviAII CATG 2 cut(s) 151, 163
CviJI RGCY 9 cut(s) 21, 31, 131, 167, 219, 245, 397, 444, 450
CviKI_1 RGCY 9 cut(s) 21, 31, 131, 167, 219, 245, 397, 444, 450
DdeI CTNAG 4 cut(s) 157, 185, 446, 451
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
DriI GACNNNNNGTC 1 cut(s) 340
EaeI YGGCCR 2 cut(s) 165, 217
EagI CGGCCG 1 cut(s) 217
Eam1105I GACNNNNNGTC 1 cut(s) 340
Ecl136II GAGCTC 1 cut(s) 450
EclXI CGGCCG 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 452
Eco52I CGGCCG 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 439
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 450
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 452
FaeI CATG 2 cut(s) 154, 166
FaiI YATR 7 cut(s) 18, 59, 81, 83, 152, 164, 300
FaqI GGGAC 1 cut(s) 72
FatI CATG 2 cut(s) 150, 162
FauI CCCGC 1 cut(s) 436
FauNDI CATATG 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 62, 65, 220
FriOI GRGCYC 1 cut(s) 452
Fsp4HI GCNGC 3 cut(s) 62, 65, 220
GlaI GCGC 1 cut(s) 363
GluI GCNGC 3 cut(s) 62, 65, 220
GsaI CCCAGC 1 cut(s) 362
GsuI CTGGAG 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 365
HaeIII GGCC 5 cut(s) 31, 167, 219, 245, 397
HapII CCGG 3 cut(s) 200, 216, 223
HhaI GCGC 1 cut(s) 364
Hin1II CATG 2 cut(s) 154, 166
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HinfI GANTC 2 cut(s) 85, 180
HpaII CCGG 3 cut(s) 200, 216, 223
HphI GGTGA 1 cut(s) 273
Hpy188I TCNGA 1 cut(s) 188
Hpy188III TCNNGA 2 cut(s) 239, 380
HpyCH4V TGCA 3 cut(s) 61, 302, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 4 cut(s) 157, 185, 446, 451
Hsp92II CATG 2 cut(s) 154, 166
HspAI GCGC 1 cut(s) 362
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 2 cut(s) 73, 76
LweI GCATC 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 272
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 1 cut(s) 90
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 2 cut(s) 46, 452
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 2 cut(s) 36, 94
MluNI TGGCCA 1 cut(s) 167
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 5 cut(s) 42, 194, 235, 387, 408
Mox20I TGGCCA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 167
MseI TTAA 2 cut(s) 93, 258
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 167
MspI CCGG 3 cut(s) 200, 216, 223
MspR9I CCNGG 1 cut(s) 327
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeI CATATG 1 cut(s) 81
NdeII GATC 1 cut(s) 235
NlaIII CATG 2 cut(s) 154, 166
PaeR7I CTCGAG 1 cut(s) 439
PfeI GAWTC 1 cut(s) 180
PkrI GCNGC 3 cut(s) 63, 66, 221
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 325
PspEI GGTNACC 1 cut(s) 272
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 1 cut(s) 325
PspPI GGNCC 1 cut(s) 244
PspXI VCTCGAGB 1 cut(s) 439
PsuI RGATCY 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 452
SaqAI TTAA 2 cut(s) 93, 258
SatI GCNGC 3 cut(s) 62, 65, 220
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 2 cut(s) 46, 452
SetI ASST 3 cut(s) 23, 452, 457
SfaNI GCATC 1 cut(s) 312
Sfr274I CTCGAG 1 cut(s) 439
SlaI CTCGAG 1 cut(s) 439
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 2 cut(s) 239, 439
SmoI CTYRAG 2 cut(s) 239, 439
Sse9I AATT 2 cut(s) 36, 94
SsiI CCGC 3 cut(s) 110, 220, 429
SstI GAGCTC 1 cut(s) 452
StyD4I CCNGG 1 cut(s) 325
TaqI TCGA 1 cut(s) 440
TasI AATT 2 cut(s) 36, 94
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 2 cut(s) 93, 258
Tru9I TTAA 2 cut(s) 93, 258
TscAI CASTG 3 cut(s) 32, 139, 372
TseI GCWGC 2 cut(s) 61, 64
TspDTI ATGAA 1 cut(s) 405
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 3 cut(s) 32, 139, 372
XhoI CTCGAG 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.