Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG139600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAATTCGCTTCCTGCTCTATTCTCAGGCCTCAGTCCTTCTCAACCTTCTTTCACGATACCAGCTCTCACCTCTACGCTTTACCCAAGAACCATCTTAACTTGCCCTCTCCATTTTCCCCTGCTTTCCCAAAAAACTCAACCTTTCCCGGAAAATGTCTCCACTTTCATCGCTTCACTGCTTTCAGCTCACTTTCCGGCGCCGAAGGGCAGAACCCATCTCAGGAACTCGCTGTTCTTCTTGAAGTTGACGGGGTTCTTATGGATGCATATCGTTTGGGTAACCGCCCAACCTTCAATGTAGCATTTAAAAAGCTCGGGCTTGACTGTGCAAACTGGACTGAACCTGTTTATTTGGACCTCCTAAGGAAGTGTGCTGGTGATGAGGAAAAGATGCTGATCATGTATTTTAATCGGATTGGTTGGCCCTCGTCATTGCCCACTACTGAGAAAGAATCATTCATAAAAAATGTTCTGCAAAAAAAGAAAATAGCAATGGATGAGTTTCTGATGTCCAATAGTTTACCTTTACGACCTGGACTTGAAGAATTTATCGATGATGCATACAATGAAGGAATACCTGTGGTCATATTGACATCATATAGTAAAAGTGGGGATGCAATTTCCAGATCCATCATTGAAAAGCTTGGCCAAGAAAGAATTTTGAAGCTAAAGATTGTTGGAGATAAGGAGGTGGAAAAGAGTTTATATGGTCAAGTAGTATTTGGTAAAGTCTTTTCTTCAGGTGTGGATGAGGAACTAGCTAAGGAGGCAATGAAAGCAGTTTCTGCTGAGAAACAAAGGATTGCAGAGGAGGTTGCGTCGATGCTAAAGTTGAATGTAGAGATTGATACTACCTCATCAGAAAGCTTACAGAAGATCATAGCTGCCTTGAGGGCAGGGGCAGAAAATGTTGGACTACCTGTCTCCAATTGTGTTCTAATTGCAGGAAGCCAGTCAGGAGTGGTAGGAGCTCAGCAAGTGGGCATGCCATGTGTTGTTTTAAGAAGCAGTTTGACGGCTAGAGCCGAGTTCCCTTCAGCAAATGCAATAATGGATGGATTTGGAGGAGCAGACCTAACTATTCCTAAACTTAAAAACAAGAAATGGTTATCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

373

Amino Acids

40.87

Weight (kDa)

6.56

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	624
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	3 cut(s)	5, 548, 660
AcuI	CTGAAG	2 cut(s)	726, 1023
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	6 cut(s)	245, 298, 545, 641, 667, 838
AhdI	GACNNNNNGTC	1 cut(s)	923
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	9 cut(s)	66, 189, 316, 646, 670, 764, 870, 887, 974
AluI	AGCT	9 cut(s)	66, 189, 316, 646, 670, 764, 870, 887, 974
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	2 cut(s)	164, 931
AlwI	GGATC	1 cut(s)	624
AlwNI	CAGNNNCTG	1 cut(s)	788
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	29, 425, 649
ApeKI	GCWGC	1 cut(s)	887
ApoI	RAATTY	3 cut(s)	5, 548, 660
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	358, 426
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	62, 392
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	358
AxyI	CCTNAGG	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	976
Bbv12I	GWGCWC	1 cut(s)	976
BbvI	GCAGC	1 cut(s)	874
BccI	CCATC	4 cut(s)	102, 226, 641, 1052
BceAI	ACGGC	1 cut(s)	1035
BciT130I	CCWGG	1 cut(s)	537
BclI	TGATCA	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	164, 931
BfaI	CTAG	2 cut(s)	761, 1023
BfoI	RGCGCY	1 cut(s)	204
BglI	GCCNNNNNGGC	1 cut(s)	896
BisI	GCNGC	1 cut(s)	888
BlpI	GCTNAGC	1 cut(s)	975
BlsI	GCNGC	1 cut(s)	889
Bme1390I	CCNGG	2 cut(s)	150, 537
Bme18I	GGWCC	1 cut(s)	358
BmeRI	GACNNNNNGTC	1 cut(s)	923
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	358, 426
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	150, 537
BmsI	GCATC	5 cut(s)	256, 384, 550, 607, 816
Bpu10I	CCTNAGC	1 cut(s)	765
Bpu1102I	GCTNAGC	1 cut(s)	975
BpuEI	CTTGAG	1 cut(s)	913
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	555
BsaBI	GATNNNNATC	2 cut(s)	270, 398
BsaHI	GRCGYC	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	806, 836
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	341, 955
Bse21I	CCTNAGG	1 cut(s)	365
Bse3DI	GCAATG	3 cut(s)	434, 501, 780
Bse8I	GATNNNNATC	2 cut(s)	270, 398
BseBI	CCWGG	1 cut(s)	537
BseCI	ATCGAT	1 cut(s)	555
BseGI	GGATG	5 cut(s)	271, 505, 622, 757, 1063
BseJI	GATNNNNATC	2 cut(s)	270, 398
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	3 cut(s)	434, 501, 780
BseMII	CTCAG	6 cut(s)	40, 47, 236, 438, 783, 989
BseNI	ACTGG	2 cut(s)	341, 955
BseRI	GAGGAG	2 cut(s)	827, 1083
BseXI	GCAGC	1 cut(s)	874
BshFI	GGCC	3 cut(s)	31, 427, 651
BshNI	GGYRCC	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	555
BsiHKAI	GWGCWC	1 cut(s)	976
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	150, 198
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	164, 931
BsnI	GGCC	3 cut(s)	31, 427, 651
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp143I	GATC	3 cut(s)	399, 629, 879
Bsp1720I	GCTNAGC	1 cut(s)	975
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	3 cut(s)	31, 427, 651
BspCNI	CTCAG	6 cut(s)	39, 46, 235, 439, 784, 988
BspDI	ATCGAT	1 cut(s)	555
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	624
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	3 cut(s)	434, 501, 780
BsrI	ACTGG	2 cut(s)	341, 955
BssMI	GATC	3 cut(s)	399, 629, 879
BssNI	GRCGYC	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstC8I	GCNNGC	1 cut(s)	989
BstDEI	CTNAG	8 cut(s)	26, 33, 222, 365, 447, 765, 792, 975
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	5 cut(s)	271, 505, 622, 757, 1063
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	3 cut(s)	402, 632, 882
BstMAI	GTCTC	2 cut(s)	164, 931
BstMBI	GATC	3 cut(s)	399, 629, 879
BstMWI	GCNNNNNNNGC	4 cut(s)	770, 779, 788, 896
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	1 cut(s)	991
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	148, 535
BstV1I	GCAGC	1 cut(s)	874
BstX2I	RGATCY	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	629
Bsu15I	ATCGAT	1 cut(s)	555
Bsu36I	CCTNAGG	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	31, 427, 651
BsuTUI	ATCGAT	1 cut(s)	555
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	5 cut(s)	271, 505, 622, 757, 1063
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	989
CaiI	CAGNNNCTG	1 cut(s)	788
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	358, 426
ClaI	ATCGAT	1 cut(s)	555
CseI	GACGC	1 cut(s)	810
CviAII	CATG	3 cut(s)	403, 988, 993
DdeI	CTNAG	8 cut(s)	26, 33, 222, 365, 447, 765, 792, 975
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	3 cut(s)	401, 631, 881
DpnII	GATC	3 cut(s)	399, 629, 879
DraI	TTTAAA	1 cut(s)	310
DriI	GACNNNNNGTC	1 cut(s)	923
EaeI	YGGCCR	1 cut(s)	649
Eam1105I	GACNNNNNGTC	1 cut(s)	923
Ecl136II	GAGCTC	1 cut(s)	974
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	976
Eco47I	GGWCC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	974
Eco57I	CTGAAG	2 cut(s)	726, 1023
Eco81I	CCTNAGG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	317
Eco91I	GGTNACC	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	974
EcoO65I	GGTNACC	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	535
EcoT22I	ATGCAT	2 cut(s)	271, 565
EcoT38I	GRGCYC	1 cut(s)	976
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
FaeI	CATG	3 cut(s)	406, 991, 996
FatI	CATG	3 cut(s)	402, 987, 992
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	888
FokI	GGATG	5 cut(s)	278, 512, 629, 764, 1070
FriOI	GRGCYC	1 cut(s)	976
Fsp4HI	GCNGC	1 cut(s)	888
FspBI	CTAG	2 cut(s)	761, 1023
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	888
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	31, 427, 651
HapII	CCGG	2 cut(s)	150, 198
HgaI	GACGC	1 cut(s)	810
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	3 cut(s)	406, 991, 996
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	2 cut(s)	644, 868
HinfI	GANTC	1 cut(s)	455
HpaII	CCGG	2 cut(s)	150, 198
HphI	GGTGA	2 cut(s)	62, 392
Hpy166II	GTNNAC	2 cut(s)	250, 524
Hpy188I	TCNGA	3 cut(s)	417, 510, 865
Hpy188III	TCNNGA	5 cut(s)	56, 224, 242, 627, 960
Hpy8I	GTNNAC	2 cut(s)	250, 524
Hpy99I	CGWCG	1 cut(s)	826
HpyAV	CCTTC	6 cut(s)	49, 58, 200, 304, 566, 1047
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	8 cut(s)	269, 332, 478, 563, 620, 809, 947, 1049
HpyF10VI	GCNNNNNNNGC	4 cut(s)	770, 779, 788, 896
HpyF3I	CTNAG	8 cut(s)	26, 33, 222, 365, 447, 765, 792, 975
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	406, 991, 996
HspAI	GCGC	1 cut(s)	201
KasI	GGCGCC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	399, 629, 879
LmnI	GCTCC	2 cut(s)	971, 1070
Lsp1109I	GCAGC	1 cut(s)	874
LweI	GCATC	5 cut(s)	256, 384, 550, 607, 816
MaeI	CTAG	2 cut(s)	761, 1023
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	3 cut(s)	401, 631, 881
MboI	GATC	3 cut(s)	399, 629, 879
MboII	GAAGA	4 cut(s)	230, 557, 732, 889
MfeI	CAATTG	1 cut(s)	931
MflI	RGATCY	1 cut(s)	629
MhlI	GDGCHC	1 cut(s)	976
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	7 cut(s)	5, 548, 621, 660, 931, 942, 1117
MluNI	TGGCCA	1 cut(s)	651
Mly113I	GGCGCC	1 cut(s)	201
MmeI	TCCRAC	2 cut(s)	661, 895
Mox20I	TGGCCA	1 cut(s)	651
Mph1103I	ATGCAT	2 cut(s)	271, 565
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	6 cut(s)	99, 309, 411, 1004, 1095, 1120
Msp20I	TGGCCA	1 cut(s)	651
MspI	CCGG	2 cut(s)	150, 198
MspR9I	CCNGG	2 cut(s)	150, 537
MunI	CAATTG	1 cut(s)	931
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	4 cut(s)	770, 779, 788, 896
NarI	GGCGCC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	399, 629, 879
NlaIII	CATG	3 cut(s)	406, 991, 996
NlaIV	GGNNCC	1 cut(s)	202
NmeAIII	GCCGAG	1 cut(s)	1054
NsiI	ATGCAT	2 cut(s)	271, 565
NspI	RCATGY	1 cut(s)	991
PaeI	GCATGC	1 cut(s)	991
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	455
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	889
PluTI	GGCGCC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	976
Psp6I	CCWGG	1 cut(s)	535
PspEI	GGTNACC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	358, 426
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	1 cut(s)	629
SacI	GAGCTC	1 cut(s)	976
SaqAI	TTAA	6 cut(s)	99, 309, 411, 1004, 1095, 1120
SatI	GCNGC	1 cut(s)	888
Sau3AI	GATC	3 cut(s)	399, 629, 879
Sau96I	GGNCC	2 cut(s)	358, 426
ScrFI	CCNGG	2 cut(s)	150, 537
SduI	GDGCHC	1 cut(s)	976
SfaNI	GCATC	5 cut(s)	256, 384, 550, 607, 816
SfoI	GGCGCC	1 cut(s)	202
SinI	GGWCC	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	892
SmoI	CTYRAG	1 cut(s)	892
SphI	GCATGC	1 cut(s)	991
Sse9I	AATT	7 cut(s)	5, 548, 621, 660, 931, 942, 1117
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	286
SspDI	GGCGCC	1 cut(s)	200
SspMI	CTAG	2 cut(s)	761, 1023
SstI	GAGCTC	1 cut(s)	976
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	148, 535
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	2 cut(s)	555, 824
TasI	AATT	7 cut(s)	5, 548, 621, 660, 931, 942, 1117
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	6 cut(s)	99, 309, 411, 1004, 1095, 1120
Tru9I	TTAA	6 cut(s)	99, 309, 411, 1004, 1095, 1120
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	1 cut(s)	887
TspDTI	ATGAA	4 cut(s)	158, 451, 585, 791
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	3 cut(s)	5, 548, 660
XceI	RCATGY	1 cut(s)	991
XspI	CTAG	2 cut(s)	761, 1023
Zsp2I	ATGCAT	2 cut(s)	271, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.