Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Forward (+)

13825729 .. 13830199

Gene Structure 4471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAATTCGCTTCCTGCTCTATTCTCAGGCCTCAGTCCTTCTCAACCATCTTTCACGATACCAACTCTCACCTCTATGCTTTACCCAAGAACCATCTCAACTTGCCCTCTCCATTTTCCCCTGCTCTCCCAAAAAACTCAACCTTTCCCGGAAAATGTCTCCACTTTCATCGCTTCACTGCTTTCAGCTCACTTTCCGGCGCCGACGGGCAGAACCCATCTCAGGAACTCGCTGTTCTTCTTGAAGTTGACGGGGTTCTTATGGATGCATATCGTTTGGGTAACCGCCCAACCTTCAATGTAGCATTTAAAAAGCTCGGGCTTGACTGTGCAAACTGGACTGAACCTGTTTATTTGGACCTCCTAAGGAAGTGTGCTGGTGATGAGGAAAAGATGCTGATCATGTATTTTAATCGGATTGGTTGGCCCTCGTCATTGCCCACTACTGAGAAAGAATCATTCATAAAAAATGTTCTGCAAAAAAAGAAAATAGCAATGGATGAGTTTCTGATGTCCAATAGTTTACCTTTACGACCTGGACTTGAAGAATTTATCGATGATGCATACAATGAAGGAATACCTGTGGTCATATTGACATCATATAGTAAAAGTGGGGATGCAATTTCCAGATCCATCATTGAAAAGCTTGGCCAAGAAAGAATTTTGAGGCTAAAGATTGTTGGAGATAAGGAGGTGGAAAAGAGTTTATATGGTCAAGTAGTATTTGGTAAAGTCTTTCTTCAGGTGTGGATGAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

28.57

Weight (kDa)

8.58

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	624
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	3 cut(s)	5, 548, 660
AcuI	CTGAAG	1 cut(s)	725
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	245, 298, 545, 641
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	3 cut(s)	189, 316, 646
AluI	AGCT	3 cut(s)	189, 316, 646
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	624
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	29, 425, 649
ApoI	RAATTY	3 cut(s)	5, 548, 660
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	358, 426
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	62, 392
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	358
AxyI	CCTNAGG	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	200
BccI	CCATC	4 cut(s)	56, 102, 226, 641
BciT130I	CCWGG	1 cut(s)	537
BclI	TGATCA	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	760
BfoI	RGCGCY	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	150, 537
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	358, 426
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	150, 537
BmsI	GCATC	4 cut(s)	256, 384, 550, 607
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	555
BsaBI	GATNNNNATC	2 cut(s)	270, 398
BsaHI	GRCGYC	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	341
Bse21I	CCTNAGG	1 cut(s)	365
Bse3DI	GCAATG	2 cut(s)	434, 501
Bse8I	GATNNNNATC	2 cut(s)	270, 398
BseBI	CCWGG	1 cut(s)	537
BseCI	ATCGAT	1 cut(s)	555
BseGI	GGATG	4 cut(s)	271, 505, 622, 756
BseJI	GATNNNNATC	2 cut(s)	270, 398
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	2 cut(s)	434, 501
BseMII	CTCAG	4 cut(s)	40, 47, 236, 438
BseNI	ACTGG	1 cut(s)	341
BshFI	GGCC	3 cut(s)	31, 427, 651
BshNI	GGYRCC	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	555
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	150, 198
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	31, 427, 651
BsoBI	CYCGRG	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	399, 629
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	3 cut(s)	31, 427, 651
BspCNI	CTCAG	4 cut(s)	39, 46, 235, 439
BspDI	ATCGAT	1 cut(s)	555
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	624
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	2 cut(s)	434, 501
BsrI	ACTGG	1 cut(s)	341
BssMI	GATC	2 cut(s)	399, 629
BssNI	GRCGYC	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	201
BstDEI	CTNAG	5 cut(s)	26, 33, 222, 365, 447
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	4 cut(s)	271, 505, 622, 756
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	402, 632
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	399, 629
BstNI	CCWGG	1 cut(s)	537
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	148, 535
BstX2I	RGATCY	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	629
Bsu15I	ATCGAT	1 cut(s)	555
Bsu36I	CCTNAGG	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	31, 427, 651
BsuTUI	ATCGAT	1 cut(s)	555
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	4 cut(s)	271, 505, 622, 756
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	358, 426
ClaI	ATCGAT	1 cut(s)	555
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	8 cut(s)	31, 189, 316, 322, 427, 646, 651, 670
CviKI_1	RGCY	8 cut(s)	31, 189, 316, 322, 427, 646, 651, 670
DdeI	CTNAG	5 cut(s)	26, 33, 222, 365, 447
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	2 cut(s)	401, 631
DpnII	GATC	2 cut(s)	399, 629
DraI	TTTAAA	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	649
Eco147I	AGGCCT	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	725
Eco81I	CCTNAGG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	317
Eco91I	GGTNACC	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	535
EcoT22I	ATGCAT	2 cut(s)	271, 565
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
FaeI	CATG	1 cut(s)	406
FalI	AAGNNNNNCTT	2 cut(s)	723, 755
FatI	CATG	1 cut(s)	402
FbaI	TGATCA	1 cut(s)	399
FokI	GGATG	3 cut(s)	278, 512, 629
FspBI	CTAG	1 cut(s)	760
GlaI	GCGC	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	31, 427, 651
HapII	CCGG	2 cut(s)	150, 198
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	406
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	1 cut(s)	455
HpaII	CCGG	2 cut(s)	150, 198
HphI	GGTGA	2 cut(s)	62, 392
Hpy166II	GTNNAC	2 cut(s)	250, 524
Hpy188I	TCNGA	2 cut(s)	417, 510
Hpy188III	TCNNGA	4 cut(s)	56, 224, 242, 627
Hpy8I	GTNNAC	2 cut(s)	250, 524
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	49, 304, 566
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	5 cut(s)	269, 332, 478, 563, 620
HpyF3I	CTNAG	5 cut(s)	26, 33, 222, 365, 447
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	406
HspAI	GCGC	1 cut(s)	201
KasI	GGCGCC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	399, 629
LweI	GCATC	4 cut(s)	256, 384, 550, 607
MaeI	CTAG	1 cut(s)	760
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	401, 631
MboI	GATC	2 cut(s)	399, 629
MboII	GAAGA	3 cut(s)	230, 557, 731
MflI	RGATCY	1 cut(s)	629
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	4 cut(s)	5, 548, 621, 660
MluNI	TGGCCA	1 cut(s)	651
Mly113I	GGCGCC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	9 cut(s)	42, 83, 118, 371, 379, 439, 660, 685, 747
Mox20I	TGGCCA	1 cut(s)	651
Mph1103I	ATGCAT	2 cut(s)	271, 565
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	2 cut(s)	309, 411
MslI	CAYNNNNRTG	1 cut(s)	75
Msp20I	TGGCCA	1 cut(s)	651
MspI	CCGG	2 cut(s)	150, 198
MspR9I	CCNGG	2 cut(s)	150, 537
MvaI	CCWGG	1 cut(s)	537
NarI	GGCGCC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	399, 629
NlaIII	CATG	1 cut(s)	406
NlaIV	GGNNCC	1 cut(s)	202
NsiI	ATGCAT	2 cut(s)	271, 565
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	455
PfoI	TCCNGGA	1 cut(s)	148
PluTI	GGCGCC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	535
PspEI	GGTNACC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	358, 426
PsuI	RGATCY	1 cut(s)	629
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	309, 411
Sau3AI	GATC	2 cut(s)	399, 629
Sau96I	GGNCC	2 cut(s)	358, 426
ScrFI	CCNGG	2 cut(s)	150, 537
SfaNI	GCATC	4 cut(s)	256, 384, 550, 607
SfoI	GGCGCC	1 cut(s)	202
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	4 cut(s)	5, 548, 621, 660
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	286
SspDI	GGCGCC	1 cut(s)	200
SspMI	CTAG	1 cut(s)	760
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	148, 535
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	1 cut(s)	555
TasI	AATT	4 cut(s)	5, 548, 621, 660
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	2 cut(s)	309, 411
Tru9I	TTAA	2 cut(s)	309, 411
TscAI	CASTG	1 cut(s)	184
TspDTI	ATGAA	4 cut(s)	17, 158, 451, 585
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	3 cut(s)	5, 548, 660
XspI	CTAG	1 cut(s)	760
Zsp2I	ATGCAT	2 cut(s)	271, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.