Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Forward (+)

14348153 .. 14351519

Gene Structure 3367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG140500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGATGAGTTTCTGATATCCAATAGTTTACCTTTGCGACCTGGACTAGAATCCATCATTGAAAAGCTTGGCCATGAAAGAATTTTGAAGCTAAAGATTGTTGGGGATAAGGAGGTGGAACAGAGTTTATATGGTCAATTTGTATCCAGTAAAGTCTTTTCTTCAGGTGTGGATGAGGAACTAGCTAAGGAAGCAATGAAAGCAGTTTCTGCTGAGAAACAAAGGATTGCTGAGGAGGTTGCATCAATGCTAAAGTTGAATGTAGAACTTGATACTGCCTCATCTAAAAGCTTACAGAAGATCACAGCTGCCTTGAAGGCAGGGGCAGAAAATGCTGGACTACCTGTCTCCAATTGTGTTCTAATTGCTGCAGGAAGCCAGTCAGGTGTAGTAGGAGCTCAGCGAGTGGGCATGCCACGTGTTGTTTTAAGAAGCAGTTTGACGGCTAGAGCTGAGTTCCCTTCAGCAAATGCGATAATGGATGGATTTGGAGGAGCAGACCTAACTATTCCTAAACTTAAAAACAAGAAATGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.08

Weight (kDa)

8.64

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	2 cut(s)	147, 447
AcvI	CACGTG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	4 cut(s)	62, 88, 259, 316
AhdI	GACNNNNNGTC	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	7 cut(s)	67, 91, 185, 291, 308, 398, 452
AluI	AGCT	7 cut(s)	67, 91, 185, 291, 308, 398, 452
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	1 cut(s)	352
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	308, 368
ApoI	RAATTY	1 cut(s)	81
BalI	TGGCCA	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	400
BbrPI	CACGTG	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	295, 355
BccI	CCATC	2 cut(s)	62, 476
BceAI	ACGGC	1 cut(s)	459
BciT130I	CCWGG	1 cut(s)	42
BciVI	GTATCC	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	3 cut(s)	47, 182, 447
BfmI	CTRYAG	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	317
BisI	GCNGC	2 cut(s)	309, 369
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	2 cut(s)	310, 370
Bme1390I	CCNGG	1 cut(s)	42
BmeRI	GACNNNNNGTC	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	251
Bpu10I	CCTNAGC	2 cut(s)	186, 231
Bpu1102I	GCTNAGC	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	419
Bse1I	ACTGG	2 cut(s)	147, 379
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	42
BseGI	GGATG	3 cut(s)	10, 178, 487
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	4 cut(s)	204, 222, 413, 444
BseNI	ACTGG	2 cut(s)	147, 379
BseRI	GAGGAG	2 cut(s)	248, 507
BseXI	GCAGC	2 cut(s)	295, 355
BshFI	GGCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	300
Bsp1720I	GCTNAGC	1 cut(s)	399
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	4 cut(s)	205, 223, 412, 445
BspMAI	CTGCAG	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	147, 379
BssMI	GATC	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	42
BstAPI	GCANNNNNTGC	2 cut(s)	209, 332
BstBAI	YACGTR	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	5 cut(s)	186, 213, 231, 399, 453
BstF5I	GGATG	3 cut(s)	10, 178, 487
BstKTI	GATC	1 cut(s)	303
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 200, 209, 317, 332
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	40
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	295, 355
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	10, 178, 487
Cac8I	GCNNGC	1 cut(s)	413
CaiI	CAGNNNCTG	1 cut(s)	209
CviAII	CATG	2 cut(s)	74, 412
DdeI	CTNAG	5 cut(s)	186, 213, 231, 399, 453
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
DriI	GACNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	400
Eco32I	GATATC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	398
Eco57I	CTGAAG	2 cut(s)	147, 447
Eco72I	CACGTG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	400
FaeI	CATG	2 cut(s)	77, 415
FaiI	YATR	5 cut(s)	75, 130, 132, 413, 538
FatI	CATG	2 cut(s)	73, 411
Fnu4HI	GCNGC	2 cut(s)	309, 369
FokI	GGATG	3 cut(s)	17, 185, 494
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	2 cut(s)	309, 369
FspBI	CTAG	3 cut(s)	47, 182, 447
GluI	GCNGC	2 cut(s)	309, 369
HaeIII	GGCC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	77, 415
HindIII	AAGCTT	2 cut(s)	65, 289
HinfI	GANTC	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	310, 471
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	2 cut(s)	242, 371
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 200, 209, 317, 332
HpyF3I	CTNAG	5 cut(s)	186, 213, 231, 399, 453
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	2 cut(s)	77, 415
Kzo9I	GATC	1 cut(s)	300
LmnI	GCTCC	2 cut(s)	395, 494
Lsp1109I	GCAGC	2 cut(s)	295, 355
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	3 cut(s)	47, 182, 447
MaeII	ACGT	1 cut(s)	418
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	2 cut(s)	153, 310
MfeI	CAATTG	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	400
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	4 cut(s)	81, 137, 352, 363
MluNI	TGGCCA	1 cut(s)	72
MnlI	CCTC	6 cut(s)	106, 169, 226, 229, 289, 485
Mox20I	TGGCCA	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	2 cut(s)	428, 519
Msp20I	TGGCCA	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	42
MunI	CAATTG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	5 cut(s)	191, 200, 209, 317, 332
NdeII	GATC	1 cut(s)	300
NlaIII	CATG	2 cut(s)	77, 415
NspI	RCATGY	1 cut(s)	415
PaeI	GCATGC	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	310, 370
PmaCI	CACGTG	1 cut(s)	419
PmlI	CACGTG	1 cut(s)	419
Ppu21I	YACGTR	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	400
SaqAI	TTAA	2 cut(s)	428, 519
SatI	GCNGC	2 cut(s)	309, 369
Sau3AI	GATC	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	1 cut(s)	251
SfcI	CTRYAG	1 cut(s)	369
SphI	GCATGC	1 cut(s)	415
Sse9I	AATT	4 cut(s)	81, 137, 352, 363
SspMI	CTAG	3 cut(s)	47, 182, 447
SstI	GAGCTC	1 cut(s)	400
StyD4I	CCNGG	1 cut(s)	40
TaiI	ACGT	1 cut(s)	421
TasI	AATT	4 cut(s)	81, 137, 352, 363
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	428, 519
Tru9I	TTAA	2 cut(s)	428, 519
TseI	GCWGC	2 cut(s)	308, 368
TspDTI	ATGAA	2 cut(s)	90, 212
XapI	RAATTY	1 cut(s)	81
XceI	RCATGY	1 cut(s)	415
XspI	CTAG	3 cut(s)	47, 182, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.