Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Forward (+)

95198801 .. 95206214

Gene Structure 7414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGATGAGTTTCTGATGTCCAGTAGTTTACCTTTACGACCTGGACTTGAAGAATTTATCAATGACGCATACAATGAAGGAATACCTGTGGTCATATTGACATCATATAGTAAAAGTGGGGATGCAATTTCCAGATCCATCATTGAAAAGCTTGGCCAAGAAAGAATTTTGAAGCTAAAGATTATTGGAGATAAGGAGGTGGAGCAGAGTTTATATGGTCAAGTAGTATTTGGTAAAGTCTTTTCTTTAGGTGTGGATGAGGAACTAGCTAAGGAGGCAATGAAAGCAGGTAGACTCCTATCTAGTTTAATAGAAATGGGTCTGTTTTTGCTTTCTGGTCCAGTTTCTGCTGAGAAACAAAGGATTGCAGAGGAGGTTGCATCGATGCTAAAGTTGAATGTAGAGATTGATACTACCTCATCAGAAAGCTTACAGAAGATCATAGCTGCCTTGAGGGCAGGGGCAGAAAATGCTGGACTACCTGTCTCCAATTGTGTTCTAATTGCAGGAAGCCAGTCAGGAGTGGTAGGAGCTCAGCAAGTGGGCATGCCATGTGTTGTTTTAAGAAGCTGGTATTTTCTTGTCACTCAATCATACAATCACCACCTAGCAATCTCCTTTCCAGAAGGGTTGGAGGTACCAGACTCTTTAGGAAAGAAAGCAAGGCCAAACCATTTTCACCCACTCCCGCTTCTTCTTCTTGCAGCTCTGCACTTCTTTGGCGACACATGGACCTTCATTGGCCTTGACATTGAAGCAGGGGCCCTTACTAAATGCAAGCAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

28.41

Weight (kDa)

5.33

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	278
Acc65I	GGTACC	1 cut(s)	637
AccB1I	GGYRCC	1 cut(s)	637
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	1 cut(s)	689
AclWI	GGATC	1 cut(s)	129
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	3 cut(s)	53, 165, 783
AfaI	GTAC	1 cut(s)	639
AgsI	TTSAA	5 cut(s)	50, 146, 172, 397, 755
AhdI	GACNNNNNGTC	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	8 cut(s)	151, 175, 269, 429, 446, 533, 570, 707
AluI	AGCT	8 cut(s)	151, 175, 269, 429, 446, 533, 570, 707
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	1 cut(s)	490
AlwI	GGATC	1 cut(s)	129
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	4 cut(s)	154, 665, 742, 762
ApaI	GGGCCC	1 cut(s)	766
ApeKI	GCWGC	2 cut(s)	446, 704
ApoI	RAATTY	3 cut(s)	53, 165, 783
Asp718I	GGTACC	1 cut(s)	637
AspS9I	GGNCC	4 cut(s)	338, 732, 762, 763
AsuHPI	GGTGA	2 cut(s)	593, 671
AvaII	GGWCC	2 cut(s)	338, 732
BaeGI	GKGCMC	1 cut(s)	766
BalI	TGGCCA	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	637
BanII	GRGCYC	2 cut(s)	535, 766
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	433, 716
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	490
BfaI	CTAG	3 cut(s)	266, 303, 608
BfuAI	ACCTGC	1 cut(s)	278
BglI	GCCNNNNNGGC	1 cut(s)	455
BisI	GCNGC	2 cut(s)	447, 705
BlpI	GCTNAGC	1 cut(s)	534
BlsI	GCNGC	2 cut(s)	448, 706
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	2 cut(s)	338, 732
BmeRI	GACNNNNNGTC	1 cut(s)	482
BmgT120I	GGNCC	4 cut(s)	338, 732, 762, 763
BmiI	GGNNCC	3 cut(s)	639, 763, 764
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	3 cut(s)	112, 375, 389
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	472
Bsa29I	ATCGAT	1 cut(s)	383
Bse1I	ACTGG	3 cut(s)	21, 341, 514
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	383
BseGI	GGATG	3 cut(s)	10, 127, 262
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	342, 548
BseNI	ACTGG	3 cut(s)	21, 341, 514
BseRI	GAGGAG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	2 cut(s)	433, 716
BsgI	GTGCAG	1 cut(s)	695
BshFI	GGCC	4 cut(s)	156, 667, 744, 764
BshNI	GGYRCC	1 cut(s)	637
BshVI	ATCGAT	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	535
BsmAI	GTCTC	1 cut(s)	490
BsnI	GGCC	4 cut(s)	156, 667, 744, 764
Bsp120I	GGGCCC	1 cut(s)	762
Bsp1286I	GDGCHC	2 cut(s)	535, 766
Bsp143I	GATC	2 cut(s)	134, 438
Bsp1720I	GCTNAGC	1 cut(s)	534
BspACI	CCGC	1 cut(s)	689
BspANI	GGCC	4 cut(s)	156, 667, 744, 764
BspCNI	CTCAG	2 cut(s)	343, 547
BspDI	ATCGAT	1 cut(s)	383
BspLI	GGNNCC	3 cut(s)	639, 763, 764
BspMI	ACCTGC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	3 cut(s)	21, 341, 514
BssMI	GATC	2 cut(s)	134, 438
Bst2UI	CCWGG	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	548, 779
BstDEI	CTNAG	3 cut(s)	270, 351, 534
BstF5I	GGATG	3 cut(s)	10, 127, 262
BstKTI	GATC	2 cut(s)	137, 441
BstMAI	GTCTC	1 cut(s)	490
BstMBI	GATC	2 cut(s)	134, 438
BstMWI	GCNNNNNNNGC	4 cut(s)	275, 284, 455, 470
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	766
BstV1I	GCAGC	2 cut(s)	433, 716
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
Bsu15I	ATCGAT	1 cut(s)	383
BsuRI	GGCC	4 cut(s)	156, 667, 744, 764
BsuTUI	ATCGAT	1 cut(s)	383
BtsCI	GGATG	3 cut(s)	10, 127, 262
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	548, 779
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr13I	GGNCC	4 cut(s)	338, 732, 762, 763
ClaI	ATCGAT	1 cut(s)	383
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	638
CviAII	CATG	3 cut(s)	547, 552, 729
CviQI	GTAC	1 cut(s)	638
DdeI	CTNAG	3 cut(s)	270, 351, 534
DpnI	GATC	2 cut(s)	136, 440
DpnII	GATC	2 cut(s)	134, 438
DriI	GACNNNNNGTC	1 cut(s)	482
EaeI	YGGCCR	1 cut(s)	154
Eam1105I	GACNNNNNGTC	1 cut(s)	482
Ecl136II	GAGCTC	1 cut(s)	533
Eco24I	GRGCYC	2 cut(s)	535, 766
Eco47I	GGWCC	2 cut(s)	338, 732
Eco53kI	GAGCTC	1 cut(s)	533
EcoICRI	GAGCTC	1 cut(s)	533
EcoO109I	RGGNCCY	2 cut(s)	762, 763
EcoRII	CCWGG	1 cut(s)	40
EcoT38I	GRGCYC	2 cut(s)	535, 766
FaeI	CATG	3 cut(s)	550, 555, 732
FatI	CATG	3 cut(s)	546, 551, 728
FauI	CCCGC	1 cut(s)	696
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	447, 705
FokI	GGATG	3 cut(s)	17, 134, 269
FriOI	GRGCYC	2 cut(s)	535, 766
Fsp4HI	GCNGC	2 cut(s)	447, 705
FspBI	CTAG	3 cut(s)	266, 303, 608
GluI	GCNGC	2 cut(s)	447, 705
HaeIII	GGCC	4 cut(s)	156, 667, 744, 764
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	550, 555, 732
HindIII	AAGCTT	2 cut(s)	149, 427
HinfI	GANTC	2 cut(s)	294, 644
HphI	GGTGA	2 cut(s)	593, 671
Hpy166II	GTNNAC	2 cut(s)	29, 293
Hpy188I	TCNGA	2 cut(s)	15, 424
Hpy188III	TCNNGA	3 cut(s)	132, 519, 623
Hpy8I	GTNNAC	2 cut(s)	29, 293
HpyAV	CCTTC	3 cut(s)	71, 620, 745
HpyCH4V	TGCA	7 cut(s)	125, 368, 380, 506, 704, 712, 777
HpyF10VI	GCNNNNNNNGC	4 cut(s)	275, 284, 455, 470
HpyF3I	CTNAG	3 cut(s)	270, 351, 534
Hsp92II	CATG	3 cut(s)	550, 555, 732
KpnI	GGTACC	1 cut(s)	641
Kzo9I	GATC	2 cut(s)	134, 438
LmnI	GCTCC	2 cut(s)	202, 530
Lsp1109I	GCAGC	2 cut(s)	433, 716
LweI	GCATC	3 cut(s)	112, 375, 389
MaeI	CTAG	3 cut(s)	266, 303, 608
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	2 cut(s)	136, 440
MboI	GATC	2 cut(s)	134, 438
MboII	GAAGA	4 cut(s)	62, 448, 686, 689
MfeI	CAATTG	1 cut(s)	490
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	2 cut(s)	535, 766
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	6 cut(s)	53, 126, 165, 490, 501, 783
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	288, 638
MmeI	TCCRAC	1 cut(s)	612
MnlI	CCTC	8 cut(s)	190, 253, 268, 364, 367, 427, 447, 628
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	3 cut(s)	308, 563, 787
Msp20I	TGGCCA	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	42
MunI	CAATTG	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	4 cut(s)	275, 284, 455, 470
NdeII	GATC	2 cut(s)	134, 438
NlaIII	CATG	3 cut(s)	550, 555, 732
NlaIV	GGNNCC	3 cut(s)	639, 763, 764
NmuCI	GTSAC	1 cut(s)	583
NspI	RCATGY	1 cut(s)	550
PaeI	GCATGC	1 cut(s)	550
PkrI	GCNGC	2 cut(s)	448, 706
PleI	GAGTC	2 cut(s)	288, 638
PpsI	GAGTC	2 cut(s)	288, 638
Psp124BI	GAGCTC	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	3 cut(s)	639, 763, 764
PspOMI	GGGCCC	1 cut(s)	762
PspPI	GGNCC	4 cut(s)	338, 732, 762, 763
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	1 cut(s)	639
RsaNI	GTAC	1 cut(s)	638
SacI	GAGCTC	1 cut(s)	535
SaqAI	TTAA	3 cut(s)	308, 563, 787
SatI	GCNGC	2 cut(s)	447, 705
Sau3AI	GATC	2 cut(s)	134, 438
Sau96I	GGNCC	4 cut(s)	338, 732, 762, 763
SchI	GAGTC	2 cut(s)	288, 638
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	2 cut(s)	535, 766
SfaNI	GCATC	3 cut(s)	112, 375, 389
SinI	GGWCC	2 cut(s)	338, 732
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	6 cut(s)	53, 126, 165, 490, 501, 783
SsiI	CCGC	1 cut(s)	689
SspMI	CTAG	3 cut(s)	266, 303, 608
SstI	GAGCTC	1 cut(s)	535
StyD4I	CCNGG	1 cut(s)	40
TaqI	TCGA	1 cut(s)	383
TasI	AATT	6 cut(s)	53, 126, 165, 490, 501, 783
Tru1I	TTAA	3 cut(s)	308, 563, 787
Tru9I	TTAA	3 cut(s)	308, 563, 787
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	2 cut(s)	446, 704
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	3 cut(s)	90, 296, 727
VpaK11BI	GGWCC	2 cut(s)	338, 732
XapI	RAATTY	3 cut(s)	53, 165, 783
XceI	RCATGY	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	292
XspI	CTAG	3 cut(s)	266, 303, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.