Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Reverse (-)

33388388 .. 33391888

Gene Structure 3501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1237600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGATTCCGCTTCCTGCTCAATTCTCCGAGCTCAGCCCTTTTCTTCTGCCGCCGCCATTTTCCCGCCAAGTAACAACACCACTGCCCGCTTCTTCGCTCTCCCGAAGACCAACCGCAACCCCAACTTGGTCCCTCTATTTTCCTCCACTTTCCCAAGAAACCCAAATTTTCCCGGAAAATGTCTGCACTTCAATCGGTTCTCCGCTTTCAGCTCTCTCTGCGGTGCTCAGGACCAGAACCCATCTCAGGAGCTCGCTGTTCTTCTCGAAGTCGAAGGGGTTCTTGTGGATGCTTATCTGTTGGGGAACCGCCAAAGCTTCAATGCAGCATTTAAGAGGCTCGGACATCTCTGTACAAATTGGACAGAGCCTGTTTACTTAGACCTCCTAAGGAAGAGTGCTGGTGATGAGGAAAAGATGGTGAATTTGTATTTTAATCAGATCGGTTGGCCTAGTTCATTGCTGACAACTCAGAAGGAGTCATTTGTGAAAAATGTCCTGCAAAAGAAGAAAATTGCAATGGATGAGTTTCTGATGTCAGAAAGTTTGACTTTACGACCTGGAGTTGAAGAGTTTATTGATGATGCATACAAGGAAGGAGTACCTGTTATCGTACTGACAACCTATAGTAAGAGTGGGAATCAAATTGCCAGATCAATTGTTGAAAAGCTTGGCGAGGAAAGAGTTTCGAAGCTAAAGATTGTCGGAGATAAGGAGGTGTTACAGAGTTTGTTTAACCAACTGGTAAATGATATAGCAATATCTTCTGGTATGGATGAGCAACTATCTAAGGAGGCAATAAAAGCAGTTTCTGCTGAGAAAGAAAGGATTTTTAAGGAGCTTGCATTATTGCTAAAGCTGATTTTAGATATTGATACTCGCCCGCCTGAAAGCTTAGAGAAGATCATTCTTGCGTTGCAAGCCGGGGCAGAAGTTGCTGGACTACCTGTATGCGATTGTGTTCTTATTGCAGGGAGCCAGTCTGGTGTGGCTGGAGCTGAGCGAGTGGGCATGCCATGTGTTGTTTTAAGAAGCAGTTTGACGGCTAGAGCTGAGTTCCCTTCGGCAAATGCGATAATGGATGGGTTTGGAGGAGCAGACCTGACCATCCCTAAACTGCGAAACAAGAGACGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

41.52

Weight (kDa)

7.52

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	1133
AcsI	RAATTY	2 cut(s)	166, 424
AfaI	GTAC	3 cut(s)	355, 603, 615
AfiI	CCNNNNNNNGG	2 cut(s)	127, 247
AgsI	TTSAA	4 cut(s)	193, 322, 569, 665
AjnI	CCWGG	1 cut(s)	559
Alw21I	GWGCWC	3 cut(s)	34, 229, 255
Alw26I	GTCTC	1 cut(s)	1123
AlwNI	CAGNNNCTG	2 cut(s)	371, 812
AoxI	GGCC	2 cut(s)	449, 1133
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	2 cut(s)	166, 424
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	130, 232
AsuC2I	CCSGG	2 cut(s)	174, 925
AsuHPI	GGTGA	2 cut(s)	416, 433
AsuII	TTCGAA	1 cut(s)	689
AvaII	GGWCC	2 cut(s)	130, 232
AxyI	CCTNAGG	1 cut(s)	389
BanII	GRGCYC	2 cut(s)	34, 255
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	3 cut(s)	34, 229, 255
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	4 cut(s)	250, 412, 1076, 1115
BceAI	ACGGC	1 cut(s)	1059
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	1 cut(s)	561
BcnI	CCSGG	2 cut(s)	174, 925
BcoDI	GTCTC	1 cut(s)	1123
BfaI	CTAG	2 cut(s)	453, 1047
BfmI	CTRYAG	1 cut(s)	625
BisI	GCNGC	3 cut(s)	51, 54, 327
BlpI	GCTNAGC	2 cut(s)	33, 999
BlsI	GCNGC	3 cut(s)	52, 55, 328
Bme1390I	CCNGG	3 cut(s)	174, 561, 925
Bme18I	GGWCC	2 cut(s)	130, 232
BmgT120I	GGNCC	2 cut(s)	130, 232
BmiI	GGNNCC	3 cut(s)	132, 308, 977
BmrFI	CCNGG	3 cut(s)	174, 561, 925
BmsI	GCATC	2 cut(s)	280, 574
BpiI	GAAGAC	1 cut(s)	113
BpmI	CTGGAG	2 cut(s)	582, 1014
Bpu10I	CCTNAGC	1 cut(s)	228
Bpu1102I	GCTNAGC	2 cut(s)	33, 999
Bpu14I	TTCGAA	1 cut(s)	689
BpuMI	CCSGG	2 cut(s)	174, 925
BsaBI	GATNNNNATC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	924
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 247
Bse1I	ACTGG	2 cut(s)	747, 979
Bse21I	CCTNAGG	1 cut(s)	389
Bse3DI	GCAATG	2 cut(s)	458, 525
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	924
BseGI	GGATG	5 cut(s)	295, 529, 781, 1087, 1107
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	127, 247
BseMI	GCAATG	2 cut(s)	458, 525
BseMII	CTCAG	7 cut(s)	47, 242, 260, 485, 807, 990, 1044
BseNI	ACTGG	2 cut(s)	747, 979
BseRI	GAGGAG	1 cut(s)	1107
BseXI	GCAGC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	451, 1135
BsiHKAI	GWGCWC	3 cut(s)	34, 229, 255
BsiSI	CCGG	2 cut(s)	174, 924
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	127, 247
BsmAI	GTCTC	1 cut(s)	1123
BsmBI	CGTCTC	1 cut(s)	1123
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	451, 1135
Bsp119I	TTCGAA	1 cut(s)	689
Bsp1286I	GDGCHC	3 cut(s)	34, 229, 255
Bsp1407I	TGTACA	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	441, 653, 903
Bsp1720I	GCTNAGC	2 cut(s)	33, 999
BspANI	GGCC	2 cut(s)	451, 1135
BspCNI	CTCAG	7 cut(s)	46, 241, 259, 484, 808, 991, 1045
BspLI	GGNNCC	3 cut(s)	132, 308, 977
BspT104I	TTCGAA	1 cut(s)	689
BsrDI	GCAATG	2 cut(s)	458, 525
BsrGI	TGTACA	1 cut(s)	353
BsrI	ACTGG	2 cut(s)	747, 979
BssECI	CCNNGG	1 cut(s)	924
BssMI	GATC	3 cut(s)	441, 653, 903
Bst2UI	CCWGG	1 cut(s)	561
Bst6I	CTCTTC	2 cut(s)	389, 564
BstAPI	GCANNNNNTGC	2 cut(s)	812, 935
BstAUI	TGTACA	1 cut(s)	353
BstBI	TTCGAA	1 cut(s)	689
BstC8I	GCNNGC	6 cut(s)	88, 255, 843, 884, 921, 1013
BstF5I	GGATG	5 cut(s)	295, 529, 781, 1087, 1107
BstKTI	GATC	3 cut(s)	444, 656, 906
BstMAI	GTCTC	1 cut(s)	1123
BstMBI	GATC	3 cut(s)	441, 653, 903
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 803, 812, 920, 935
BstNI	CCWGG	1 cut(s)	561
BstNSI	RCATGY	1 cut(s)	1015
BstSCI	CCNGG	3 cut(s)	172, 559, 923
BstSFI	CTRYAG	1 cut(s)	625
BstV1I	GCAGC	1 cut(s)	338
BstV2I	GAAGAC	1 cut(s)	113
Bsu36I	CCTNAGG	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	451, 1135
BtsCI	GGATG	5 cut(s)	295, 529, 781, 1087, 1107
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	6 cut(s)	88, 255, 843, 884, 921, 1013
CaiI	CAGNNNCTG	2 cut(s)	371, 812
Cfr13I	GGNCC	2 cut(s)	130, 232
Csp6I	GTAC	3 cut(s)	354, 602, 614
CviAII	CATG	3 cut(s)	1012, 1017, 1137
CviQI	GTAC	3 cut(s)	354, 602, 614
DpnI	GATC	3 cut(s)	443, 655, 905
DpnII	GATC	3 cut(s)	441, 653, 903
EaeI	YGGCCR	1 cut(s)	1133
Eam1104I	CTCTTC	2 cut(s)	389, 564
EarI	CTCTTC	2 cut(s)	389, 564
Ecl136II	GAGCTC	2 cut(s)	32, 253
Eco24I	GRGCYC	2 cut(s)	34, 255
Eco47I	GGWCC	2 cut(s)	130, 232
Eco53kI	GAGCTC	2 cut(s)	32, 253
Eco81I	CCTNAGG	1 cut(s)	389
EcoICRI	GAGCTC	2 cut(s)	32, 253
EcoRII	CCWGG	1 cut(s)	559
EcoT22I	ATGCAT	1 cut(s)	589
EcoT38I	GRGCYC	2 cut(s)	34, 255
Esp3I	CGTCTC	1 cut(s)	1123
FaeI	CATG	3 cut(s)	1015, 1020, 1140
FaiI	YATR	8 cut(s)	589, 627, 755, 773, 952, 1013, 1018, 1138
FalI	AAGNNNNNCTT	4 cut(s)	267, 299, 535, 567
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	3 cut(s)	1011, 1016, 1136
FauI	CCCGC	3 cut(s)	72, 95, 891
Fnu4HI	GCNGC	3 cut(s)	51, 54, 327
FokI	GGATG	5 cut(s)	302, 536, 788, 1094, 1094
FriOI	GRGCYC	2 cut(s)	34, 255
Fsp4HI	GCNGC	3 cut(s)	51, 54, 327
FspBI	CTAG	2 cut(s)	453, 1047
GluI	GCNGC	3 cut(s)	51, 54, 327
GsuI	CTGGAG	2 cut(s)	582, 1014
HaeIII	GGCC	2 cut(s)	451, 1135
HapII	CCGG	2 cut(s)	174, 924
Hin1II	CATG	3 cut(s)	1015, 1020, 1140
HindIII	AAGCTT	3 cut(s)	316, 668, 892
HinfI	GANTC	3 cut(s)	5, 479, 640
HpaII	CCGG	2 cut(s)	174, 924
HphI	GGTGA	2 cut(s)	416, 433
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	7 cut(s)	29, 344, 441, 474, 534, 541, 707
Hpy188III	TCNNGA	4 cut(s)	103, 230, 248, 266
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	4 cut(s)	269, 469, 590, 1071
HpyCH4V	TGCA	8 cut(s)	187, 326, 502, 518, 587, 845, 919, 971
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 803, 812, 920, 935
Hsp92II	CATG	3 cut(s)	1015, 1020, 1140
Kzo9I	GATC	3 cut(s)	441, 653, 903
LmnI	GCTCC	5 cut(s)	250, 838, 975, 995, 1094
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	2 cut(s)	280, 574
MaeI	CTAG	2 cut(s)	453, 1047
MaeIII	GTNAC	2 cut(s)	71, 720
MalI	GATC	3 cut(s)	443, 655, 905
MboI	GATC	3 cut(s)	441, 653, 903
MboII	GAAGA	9 cut(s)	36, 85, 118, 254, 406, 520, 581, 756, 913
MfeI	CAATTG	1 cut(s)	657
MhlI	GDGCHC	3 cut(s)	34, 229, 255
MluCI	AATT	7 cut(s)	21, 166, 358, 424, 513, 645, 657
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	685
MnlI	CCTC	9 cut(s)	144, 154, 330, 395, 403, 670, 709, 787, 1085
Mph1103I	ATGCAT	1 cut(s)	589
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	5 cut(s)	333, 435, 735, 834, 1028
MspI	CCGG	2 cut(s)	174, 924
MspR9I	CCNGG	3 cut(s)	174, 561, 925
MunI	CAATTG	1 cut(s)	657
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	5 cut(s)	219, 803, 812, 920, 935
NciI	CCSGG	2 cut(s)	174, 925
NdeII	GATC	3 cut(s)	441, 653, 903
NlaIII	CATG	3 cut(s)	1015, 1020, 1140
NlaIV	GGNNCC	3 cut(s)	132, 308, 977
NsiI	ATGCAT	1 cut(s)	589
NspI	RCATGY	1 cut(s)	1015
NspV	TTCGAA	1 cut(s)	689
PaeI	GCATGC	1 cut(s)	1015
PcsI	WCGNNNNNNNCGW	1 cut(s)	1070
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	5, 640
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	52, 55, 328
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Psp124BI	GAGCTC	2 cut(s)	34, 255
Psp6I	CCWGG	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	3 cut(s)	132, 308, 977
PspPI	GGNCC	2 cut(s)	130, 232
PstNI	CAGNNNCTG	2 cut(s)	371, 812
RsaI	GTAC	3 cut(s)	355, 603, 615
RsaNI	GTAC	3 cut(s)	354, 602, 614
SacI	GAGCTC	2 cut(s)	34, 255
SaqAI	TTAA	5 cut(s)	333, 435, 735, 834, 1028
SatI	GCNGC	3 cut(s)	51, 54, 327
Sau3AI	GATC	3 cut(s)	441, 653, 903
Sau96I	GGNCC	2 cut(s)	130, 232
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	3 cut(s)	174, 561, 925
SduI	GDGCHC	3 cut(s)	34, 229, 255
SfaNI	GCATC	2 cut(s)	280, 574
SfcI	CTRYAG	1 cut(s)	625
SfuI	TTCGAA	1 cut(s)	689
SinI	GGWCC	2 cut(s)	130, 232
SphI	GCATGC	1 cut(s)	1015
Sse9I	AATT	7 cut(s)	21, 166, 358, 424, 513, 645, 657
SspMI	CTAG	2 cut(s)	453, 1047
SstI	GAGCTC	2 cut(s)	34, 255
StyD4I	CCNGG	3 cut(s)	172, 559, 923
TaqI	TCGA	3 cut(s)	267, 273, 689
TasI	AATT	7 cut(s)	21, 166, 358, 424, 513, 645, 657
TatI	WGTACW	1 cut(s)	353
TauI	GCSGC	2 cut(s)	53, 56
TfiI	GAWTC	2 cut(s)	5, 640
Tru1I	TTAA	5 cut(s)	333, 435, 735, 834, 1028
Tru9I	TTAA	5 cut(s)	333, 435, 735, 834, 1028
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	447
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	2 cut(s)	130, 232
XapI	RAATTY	2 cut(s)	166, 424
XceI	RCATGY	1 cut(s)	1015
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	2 cut(s)	453, 1047
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.