Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002759.1

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Forward (+)

124049 .. 128074

Gene Structure 4026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002759.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggatgagtttctgatgtccaatagtttacctttgcgacctggacttgaagactttattgatgatgcctacaatgaacgaatacctgtggtcatattgacatcctatagtaaaagtggggatgcaatttccagatccatcattgaaaagcttggccatgaaagaattttgaagctaaagattgttggggataaggaggtggaacagagtttatatggtcaatttgtatccagtaaagttttttcttcaggtgtggtccgtgtggatgaggaactagctaaggaagcaatgaaagcagtttctgctgagaaacaaaggattgctgaggatgttgcatcaatgctaaagttgaatgtagaacttgatactacctcatctaaaagcttacagaagatcatagctgccttgagggcaggggcagaaaatgctggactacttgtctccaattgtgttctaattgcaggaagccagtcaggtgtcgtaggagctcagcgagtgggcatgccacgtgttgttttaagaagcagtcggcggcatcctcgccaccaacacctcctgactgacttcatcgccctcaacctccaaatccagaccaacgtcatcaacgccctcaacgtccttattcgcagctctttcatcgagtcaactgccttcatcgaccgcgacccctccctcaagtccctcatctcctgcctcgacctcgccgcgaaccccaactcccgatccctgccgaactcagcttctcctatcaccagtgttctaaaactcggccgcccaggctgggcggcgagtctccgccgcgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

29.22

Weight (kDa)

9.09

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	663, 707, 801
AciI	CCGC	7 cut(s)	532, 661, 705, 772, 785, 796, 799
AclWI	GGATC	2 cut(s)	129, 717
AcoI	YGGCCR	2 cut(s)	154, 769
AcsI	RAATTY	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	231
AcvI	CACGTG	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	781
AflIII	ACRYGT	1 cut(s)	508
AgsI	TTSAA	4 cut(s)	50, 146, 172, 352
AhdI	GACNNNNNGTC	1 cut(s)	437
AjnI	CCWGG	2 cut(s)	40, 775
AloI	GAACNNNNNNTCC	2 cut(s)	701, 733
AluBI	AGCT	8 cut(s)	151, 175, 278, 384, 401, 488, 630, 740
AluI	AGCT	8 cut(s)	151, 175, 278, 384, 401, 488, 630, 740
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	2 cut(s)	445, 797
AlwI	GGATC	2 cut(s)	129, 717
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	154, 769
ApeKI	GCWGC	2 cut(s)	401, 627
ApoI	RAATTY	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	742
AvaII	GGWCC	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	490
BbrPI	CACGTG	1 cut(s)	509
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	490
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	388, 639
BccI	CCATC	1 cut(s)	146
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	2 cut(s)	42, 777
BciVI	GTATCC	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	445, 797
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	106
BfuI	GTATCC	1 cut(s)	238
BglI	GCCNNNNNGGC	2 cut(s)	410, 777
BisI	GCNGC	7 cut(s)	402, 533, 628, 705, 772, 786, 799
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	7 cut(s)	403, 534, 629, 706, 773, 787, 800
Bme1390I	CCNGG	2 cut(s)	42, 777
Bme18I	GGWCC	1 cut(s)	256
BmeRI	GACNNNNNGTC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	42, 777
BmsI	GCATC	4 cut(s)	55, 112, 344, 544
BoxI	GACNNNNGTC	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	2 cut(s)	279, 324
Bpu1102I	GCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	427, 659
BsaAI	YACGTR	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	775
BsaXI	ACNNNNNCTCC	2 cut(s)	701, 731
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse1I	ACTGG	3 cut(s)	231, 469, 753
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	42, 777
BseDI	CCNNGG	1 cut(s)	775
BseGI	GGATG	6 cut(s)	10, 101, 127, 271, 334, 535
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	4 cut(s)	297, 315, 503, 750
BseNI	ACTGG	3 cut(s)	231, 469, 753
BseX3I	CGGCCG	1 cut(s)	769
BseXI	GCAGC	2 cut(s)	388, 639
BseYI	CCCAGC	1 cut(s)	780
Bsh1236I	CGCG	3 cut(s)	663, 707, 801
Bsh1285I	CGRYCG	2 cut(s)	661, 772
BshFI	GGCC	2 cut(s)	156, 771
BsiEI	CGRYCG	2 cut(s)	661, 772
BsiHKAI	GWGCWC	1 cut(s)	490
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	1 cut(s)	781
BsmAI	GTCTC	2 cut(s)	445, 797
BsmFI	GGGAC	1 cut(s)	664
BsnI	GGCC	2 cut(s)	156, 771
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	3 cut(s)	134, 393, 722
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	7 cut(s)	532, 661, 705, 772, 785, 796, 799
BspANI	GGCC	2 cut(s)	156, 771
BspCNI	CTCAG	4 cut(s)	298, 316, 502, 749
BspFNI	CGCG	3 cut(s)	663, 707, 801
BspPI	GGATC	2 cut(s)	129, 717
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	3 cut(s)	231, 469, 753
BssECI	CCNNGG	1 cut(s)	775
BssMI	GATC	3 cut(s)	134, 393, 722
Bst2UI	CCWGG	2 cut(s)	42, 777
BstAPI	GCANNNNNTGC	2 cut(s)	302, 425
BstBAI	YACGTR	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	503
BstDEI	CTNAG	5 cut(s)	279, 306, 324, 489, 736
BstF5I	GGATG	6 cut(s)	10, 101, 127, 271, 334, 535
BstFNI	CGCG	3 cut(s)	663, 707, 801
BstKTI	GATC	3 cut(s)	137, 396, 725
BstMAI	GTCTC	2 cut(s)	445, 797
BstMBI	GATC	3 cut(s)	134, 393, 722
BstMCI	CGRYCG	2 cut(s)	661, 772
BstMWI	GCNNNNNNNGC	6 cut(s)	284, 293, 302, 410, 425, 777
BstNI	CCWGG	2 cut(s)	42, 777
BstNSI	RCATGY	1 cut(s)	505
BstPAI	GACNNNNGTC	1 cut(s)	596
BstSCI	CCNGG	2 cut(s)	40, 775
BstSFI	CTRYAG	1 cut(s)	106
BstUI	CGCG	3 cut(s)	663, 707, 801
BstV1I	GCAGC	2 cut(s)	388, 639
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BstZI	CGGCCG	1 cut(s)	769
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	156, 771
BtgZI	GCGATG	1 cut(s)	553
BtsCI	GGATG	6 cut(s)	10, 101, 127, 271, 334, 535
BtsIMutI	CAGTG	1 cut(s)	760
Cac8I	GCNNGC	1 cut(s)	503
CaiI	CAGNNNCTG	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	256
CviAII	CATG	2 cut(s)	158, 502
DdeI	CTNAG	5 cut(s)	279, 306, 324, 489, 736
DpnI	GATC	3 cut(s)	136, 395, 724
DpnII	GATC	3 cut(s)	134, 393, 722
DriI	GACNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	2 cut(s)	154, 769
EagI	CGGCCG	1 cut(s)	769
Eam1105I	GACNNNNNGTC	1 cut(s)	437
EciI	GGCGGA	1 cut(s)	785
Ecl136II	GAGCTC	1 cut(s)	488
EclXI	CGGCCG	1 cut(s)	769
Eco24I	GRGCYC	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	256
Eco52I	CGGCCG	1 cut(s)	769
Eco53kI	GAGCTC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	231
Eco72I	CACGTG	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	488
EcoRII	CCWGG	2 cut(s)	40, 775
EcoT38I	GRGCYC	1 cut(s)	490
FaeI	CATG	2 cut(s)	161, 505
FaiI	YATR	7 cut(s)	95, 108, 159, 214, 216, 398, 503
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	2 cut(s)	157, 501
Fnu4HI	GCNGC	7 cut(s)	402, 533, 628, 705, 772, 786, 799
FokI	GGATG	6 cut(s)	17, 88, 134, 278, 341, 522
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	7 cut(s)	402, 533, 628, 705, 772, 786, 799
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	7 cut(s)	402, 533, 628, 705, 772, 786, 799
GsaI	CCCAGC	1 cut(s)	784
HaeIII	GGCC	2 cut(s)	156, 771
Hin1II	CATG	2 cut(s)	161, 505
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HindIII	AAGCTT	2 cut(s)	149, 382
HinfI	GANTC	2 cut(s)	641, 790
HphI	GGTGA	1 cut(s)	742
Hpy166II	GTNNAC	2 cut(s)	29, 645
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	4 cut(s)	132, 556, 589, 720
Hpy8I	GTNNAC	2 cut(s)	29, 645
HpyAV	CCTTC	1 cut(s)	661
HpyCH4IV	ACGT	3 cut(s)	508, 597, 615
HpyCH4V	TGCA	3 cut(s)	125, 335, 461
HpyF10VI	GCNNNNNNNGC	6 cut(s)	284, 293, 302, 410, 425, 777
HpyF3I	CTNAG	5 cut(s)	279, 306, 324, 489, 736
HpySE526I	ACGT	3 cut(s)	508, 597, 615
Hsp92II	CATG	2 cut(s)	161, 505
Kzo9I	GATC	3 cut(s)	134, 393, 722
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	2 cut(s)	388, 639
LweI	GCATC	4 cut(s)	55, 112, 344, 544
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	3 cut(s)	508, 597, 615
MalI	GATC	3 cut(s)	136, 395, 724
MboI	GATC	3 cut(s)	134, 393, 722
MboII	GAAGA	3 cut(s)	62, 237, 403
MfeI	CAATTG	1 cut(s)	445
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	490
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	5 cut(s)	126, 165, 221, 445, 456
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	650, 799
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	2 cut(s)	518, 805
Msp20I	TGGCCA	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	42, 777
MunI	CAATTG	1 cut(s)	445
MvaI	CCWGG	2 cut(s)	42, 777
MvnI	CGCG	3 cut(s)	663, 707, 801
MwoI	GCNNNNNNNGC	6 cut(s)	284, 293, 302, 410, 425, 777
NdeII	GATC	3 cut(s)	134, 393, 722
NlaIII	CATG	2 cut(s)	161, 505
NmeAIII	GCCGAG	1 cut(s)	747
NspI	RCATGY	1 cut(s)	505
PaeI	GCATGC	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PkrI	GCNGC	7 cut(s)	403, 534, 629, 706, 773, 787, 800
PleI	GAGTC	2 cut(s)	649, 798
PmaCI	CACGTG	1 cut(s)	509
PmlI	CACGTG	1 cut(s)	509
PpsI	GAGTC	2 cut(s)	649, 798
Ppu21I	YACGTR	1 cut(s)	509
PshAI	GACNNNNGTC	1 cut(s)	596
Psp124BI	GAGCTC	1 cut(s)	490
Psp6I	CCWGG	2 cut(s)	40, 775
PspCI	CACGTG	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	780
PspGI	CCWGG	2 cut(s)	40, 775
PspPI	GGNCC	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	490
SaqAI	TTAA	2 cut(s)	518, 805
SatI	GCNGC	7 cut(s)	402, 533, 628, 705, 772, 786, 799
Sau3AI	GATC	3 cut(s)	134, 393, 722
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	2 cut(s)	650, 799
ScrFI	CCNGG	2 cut(s)	42, 777
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	4 cut(s)	55, 112, 344, 544
SfcI	CTRYAG	1 cut(s)	106
SinI	GGWCC	1 cut(s)	256
SmlI	CTYRAG	2 cut(s)	406, 674
SmoI	CTYRAG	2 cut(s)	406, 674
SphI	GCATGC	1 cut(s)	505
Sse9I	AATT	5 cut(s)	126, 165, 221, 445, 456
SsiI	CCGC	7 cut(s)	532, 661, 705, 772, 785, 796, 799
SspMI	CTAG	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	490
StyD4I	CCNGG	2 cut(s)	40, 775
TaiI	ACGT	3 cut(s)	511, 600, 618
TaqI	TCGA	3 cut(s)	639, 657, 696
TasI	AATT	5 cut(s)	126, 165, 221, 445, 456
TauI	GCSGC	5 cut(s)	535, 707, 774, 788, 801
Tru1I	TTAA	2 cut(s)	518, 805
Tru9I	TTAA	2 cut(s)	518, 805
TscAI	CASTG	1 cut(s)	760
TseI	GCWGC	2 cut(s)	401, 627
TspDTI	ATGAA	6 cut(s)	90, 174, 305, 556, 625, 643
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	760
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	165
XceI	RCATGY	1 cut(s)	505
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.