Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Reverse (-)

33368746 .. 33372882

Gene Structure 4137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1237500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGATTCCGCTTCGCGCTCAATTCTCCGAAACTTTTCTTCTACGGCCGTCATTTTCCCGCCAAGTAACAACACCACTGCCCGCTTCTTCGATCTACCGAAGACCAACCACAACCCCAACTTGGTCCCTCTATTTTCCTCCACTTTCCCAAGAAACCCAAATTTTCCCGGAAAATGTCTGCACTTCGATCGGTTCTCCGCTTTCAGCTCTCTCTGCGGCGTTCAGGATCAGAACCCATCTCAGGAGCTCGCTGTTCTTCTCGAAGTCGATGGGGTTCTTATGGATGCTTACCGGATGGGGAACCGCCAAAGCTTCAATGCAGCATTTAAGAAGCTCGGACAGCGCTGTACAAATTGGACAGAGCCTGTTTACTTGGACCTCCTAAGGGAGAGTGGTGGTGATGAGGAAAAGATGGTGAATTTGTATTTTAATCGGATTGGTTGGCCTAGTTCATTGCCGACAAGTGAGGGGTCATTTGTGAAAAATGTCCTGAAAAAGAAGAAAATTGCAATGGATGAGTTTCTGATGTCAGAAAGTTTGACTCTACGACCTGGAGTTGAAGAGTTTATTGATGATGCATACAAGGAAGGAGTACCTGTTGTCGTACTGACAACCTATAGTAAGAGTGGGAATCAAATTGCCAGATCAATTGTTGAAAAGCTTGGCGAGGAAAGAGTTTCGAAGCTAAAGATTGTCGGAGATAAGGAGGTGTTACAGAGTTTGTTTAACCAACTGGTAAATGATATAGCATTATCTTCTGGTATGGATGAGCAGCTATCTAAGGAGGCAATAAAAGCAGTTTCTGCTGAGAAAGAAAGGATTTTTAAGGAGCTTGCATTATTGCTAAAGCTGATTTTAGATATTGATACTCGCCCGCCTGAAAGCTTAGAGAAGATCATTCTTGCATTGCAAGCCGGGGCAGAAGTTGCTGGACTACCTGTATGCAATTGTGTTCTTATTGCAGGAAGCCAGTCTGGTGTGGCTGGAGCTAAGCGAGTGGGCATGCCATGTGTTGTTTTAAGAAGCAGTTTGACGGCTAGAGATGAGTTCCCTTGCGCAAATGCGATAATGGATGGGTTTGGAGGAGCAGAGCTGACCATCCCTAAACTGCGCAACAAGGGACGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

41.32

Weight (kDa)

7.51

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1057, 1112
AccII	CGCG	1 cut(s)	16
AciI	CCGC	7 cut(s)	9, 59, 82, 198, 216, 304, 875
AclWI	GGATC	1 cut(s)	234
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	160, 418
AfaI	GTAC	3 cut(s)	349, 594, 606
AfeI	AGCGCT	1 cut(s)	344
AfiI	CCNNNNNNNGG	3 cut(s)	121, 241, 385
AgsI	TTSAA	3 cut(s)	316, 560, 656
AjnI	CCWGG	1 cut(s)	550
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	234
AlwNI	CAGNNNCTG	2 cut(s)	365, 803
Aor51HI	AGCGCT	1 cut(s)	344
AoxI	GGCC	2 cut(s)	45, 443
ApeKI	GCWGC	2 cut(s)	320, 772
ApoI	RAATTY	2 cut(s)	160, 418
Asp700I	GAANNNNTTC	1 cut(s)	34
AspLEI	GCGC	4 cut(s)	18, 345, 1058, 1113
AspS9I	GGNCC	2 cut(s)	124, 376
AsuC2I	CCSGG	2 cut(s)	168, 916
AsuHPI	GGTGA	2 cut(s)	410, 427
AsuII	TTCGAA	1 cut(s)	680
AvaII	GGWCC	2 cut(s)	124, 376
AxyI	CCTNAGG	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	332, 784
BccI	CCATC	6 cut(s)	244, 263, 289, 406, 1067, 1106
BceAI	ACGGC	3 cut(s)	32, 60, 1050
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	1 cut(s)	552
BcnI	CCSGG	2 cut(s)	168, 916
BfaI	CTAG	2 cut(s)	447, 1038
BfmI	CTRYAG	1 cut(s)	616
BfoI	RGCGCY	1 cut(s)	346
BisI	GCNGC	3 cut(s)	217, 321, 773
BlpI	GCTNAGC	1 cut(s)	990
BlsI	GCNGC	3 cut(s)	218, 322, 774
Bme1390I	CCNGG	3 cut(s)	168, 552, 916
Bme18I	GGWCC	2 cut(s)	124, 376
BmgT120I	GGNCC	2 cut(s)	124, 376
BmiI	GGNNCC	2 cut(s)	126, 302
BmrFI	CCNGG	3 cut(s)	168, 552, 916
BmsI	GCATC	2 cut(s)	274, 565
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	2 cut(s)	573, 1005
Bpu1102I	GCTNAGC	1 cut(s)	990
Bpu14I	TTCGAA	1 cut(s)	680
BpuMI	CCSGG	2 cut(s)	168, 916
BsaJI	CCNNGG	1 cut(s)	915
BsaWI	WCCGGW	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 241, 385
Bse1I	ACTGG	2 cut(s)	738, 970
Bse21I	CCTNAGG	1 cut(s)	383
Bse3DI	GCAATG	3 cut(s)	452, 516, 905
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	1 cut(s)	915
BseGI	GGATG	6 cut(s)	289, 300, 520, 772, 1078, 1098
BseLI	CCNNNNNNNGG	3 cut(s)	121, 241, 385
BseMI	GCAATG	3 cut(s)	452, 516, 905
BseMII	CTCAG	2 cut(s)	254, 798
BseNI	ACTGG	2 cut(s)	738, 970
BseRI	GAGGAG	1 cut(s)	1098
BseX3I	CGGCCG	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	332, 784
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	16
Bsh1285I	CGRYCG	2 cut(s)	48, 190
BshFI	GGCC	2 cut(s)	47, 445
BsiEI	CGRYCG	2 cut(s)	48, 190
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	3 cut(s)	168, 292, 915
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	121, 241, 385
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	47, 445
Bsp119I	TTCGAA	1 cut(s)	680
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	347
Bsp143I	GATC	5 cut(s)	91, 187, 226, 644, 894
Bsp1720I	GCTNAGC	1 cut(s)	990
BspACI	CCGC	7 cut(s)	9, 59, 82, 198, 216, 304, 875
BspANI	GGCC	2 cut(s)	47, 445
BspCNI	CTCAG	2 cut(s)	253, 799
BspFNI	CGCG	1 cut(s)	16
BspHI	TCATGA	1 cut(s)	1127
BspLI	GGNNCC	2 cut(s)	126, 302
BspPI	GGATC	1 cut(s)	234
BspT104I	TTCGAA	1 cut(s)	680
BsrDI	GCAATG	3 cut(s)	452, 516, 905
BsrGI	TGTACA	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	738, 970
BssECI	CCNNGG	1 cut(s)	915
BssMI	GATC	5 cut(s)	91, 187, 226, 644, 894
Bst2UI	CCWGG	1 cut(s)	552
Bst6I	CTCTTC	1 cut(s)	555
BstAPI	GCANNNNNTGC	2 cut(s)	803, 926
BstAUI	TGTACA	1 cut(s)	347
BstBI	TTCGAA	1 cut(s)	680
BstC8I	GCNNGC	6 cut(s)	82, 249, 834, 875, 912, 1004
BstDEI	CTNAG	6 cut(s)	240, 383, 780, 807, 886, 990
BstF5I	GGATG	6 cut(s)	289, 300, 520, 772, 1078, 1098
BstFNI	CGCG	1 cut(s)	16
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	4 cut(s)	18, 345, 1058, 1113
BstKTI	GATC	5 cut(s)	94, 190, 229, 647, 897
BstMBI	GATC	5 cut(s)	91, 187, 226, 644, 894
BstMCI	CGRYCG	2 cut(s)	48, 190
BstMWI	GCNNNNNNNGC	6 cut(s)	213, 340, 794, 803, 911, 926
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	1 cut(s)	1006
BstSCI	CCNGG	3 cut(s)	166, 550, 914
BstSFI	CTRYAG	1 cut(s)	616
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	332, 784
BstV2I	GAAGAC	1 cut(s)	107
BstZI	CGGCCG	1 cut(s)	45
Bsu36I	CCTNAGG	1 cut(s)	383
BsuRI	GGCC	2 cut(s)	47, 445
BtsCI	GGATG	6 cut(s)	289, 300, 520, 772, 1078, 1098
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	6 cut(s)	82, 249, 834, 875, 912, 1004
CaiI	CAGNNNCTG	2 cut(s)	365, 803
CciI	TCATGA	1 cut(s)	1127
CfoI	GCGC	4 cut(s)	18, 345, 1058, 1113
Cfr13I	GGNCC	2 cut(s)	124, 376
Csp6I	GTAC	3 cut(s)	348, 593, 605
CviAII	CATG	3 cut(s)	1003, 1008, 1128
CviQI	GTAC	3 cut(s)	348, 593, 605
DdeI	CTNAG	6 cut(s)	240, 383, 780, 807, 886, 990
DpnI	GATC	5 cut(s)	93, 189, 228, 646, 896
DpnII	GATC	5 cut(s)	91, 187, 226, 644, 894
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Ecl136II	GAGCTC	1 cut(s)	247
EclXI	CGGCCG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	124, 376
Eco47III	AGCGCT	1 cut(s)	344
Eco52I	CGGCCG	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	247
Eco81I	CCTNAGG	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	550
EcoT22I	ATGCAT	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	3 cut(s)	1006, 1011, 1131
FaiI	YATR	9 cut(s)	281, 580, 618, 746, 764, 943, 1004, 1009, 1129
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	3 cut(s)	1002, 1007, 1127
FauI	CCCGC	3 cut(s)	66, 89, 882
Fnu4HI	GCNGC	3 cut(s)	217, 321, 773
FokI	GGATG	6 cut(s)	296, 307, 527, 779, 1085, 1085
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	3 cut(s)	217, 321, 773
FspBI	CTAG	2 cut(s)	447, 1038
FspI	TGCGCA	2 cut(s)	1057, 1112
GlaI	GCGC	4 cut(s)	17, 344, 1057, 1112
GluI	GCNGC	3 cut(s)	217, 321, 773
GsuI	CTGGAG	2 cut(s)	573, 1005
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	2 cut(s)	47, 445
HapII	CCGG	3 cut(s)	168, 292, 915
HhaI	GCGC	4 cut(s)	18, 345, 1058, 1113
Hin1II	CATG	3 cut(s)	1006, 1011, 1131
Hin6I	GCGC	4 cut(s)	16, 343, 1056, 1111
HinP1I	GCGC	4 cut(s)	16, 343, 1056, 1111
HindIII	AAGCTT	3 cut(s)	310, 659, 883
HinfI	GANTC	3 cut(s)	5, 541, 631
HpaII	CCGG	3 cut(s)	168, 292, 915
HphI	GGTGA	2 cut(s)	410, 427
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	7 cut(s)	29, 231, 338, 435, 525, 532, 698
Hpy188III	TCNNGA	5 cut(s)	224, 242, 260, 490, 1128
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	1 cut(s)	581
HpyCH4V	TGCA	9 cut(s)	181, 320, 509, 578, 836, 905, 910, 945, 962
HpyF10VI	GCNNNNNNNGC	6 cut(s)	213, 340, 794, 803, 911, 926
HpyF3I	CTNAG	6 cut(s)	240, 383, 780, 807, 886, 990
Hsp92II	CATG	3 cut(s)	1006, 1011, 1131
HspAI	GCGC	4 cut(s)	16, 343, 1056, 1111
Kzo9I	GATC	5 cut(s)	91, 187, 226, 644, 894
LmnI	GCTCC	4 cut(s)	244, 829, 986, 1085
Lsp1109I	GCAGC	2 cut(s)	332, 784
LweI	GCATC	2 cut(s)	274, 565
MaeI	CTAG	2 cut(s)	447, 1038
MaeIII	GTNAC	2 cut(s)	65, 711
MalI	GATC	5 cut(s)	93, 189, 228, 646, 896
MboI	GATC	5 cut(s)	91, 187, 226, 644, 894
MboII	GAAGA	8 cut(s)	30, 79, 112, 248, 511, 572, 747, 904
MfeI	CAATTG	2 cut(s)	648, 946
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	8 cut(s)	21, 160, 352, 418, 504, 636, 648, 946
MlyI	GAGTC	1 cut(s)	535
MmeI	TCCRAC	1 cut(s)	676
MnlI	CCTC	9 cut(s)	138, 148, 389, 397, 460, 661, 700, 778, 1076
Mph1103I	ATGCAT	1 cut(s)	580
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	5 cut(s)	327, 429, 726, 825, 1019
MspI	CCGG	3 cut(s)	168, 292, 915
MspR9I	CCNGG	3 cut(s)	168, 552, 916
MunI	CAATTG	2 cut(s)	648, 946
MvaI	CCWGG	1 cut(s)	552
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	6 cut(s)	213, 340, 794, 803, 911, 926
NciI	CCSGG	2 cut(s)	168, 916
NdeII	GATC	5 cut(s)	91, 187, 226, 644, 894
NlaIII	CATG	3 cut(s)	1006, 1011, 1131
NlaIV	GGNNCC	2 cut(s)	126, 302
NsbI	TGCGCA	2 cut(s)	1057, 1112
NsiI	ATGCAT	1 cut(s)	580
NspI	RCATGY	1 cut(s)	1006
NspV	TTCGAA	1 cut(s)	680
PaeI	GCATGC	1 cut(s)	1006
PagI	TCATGA	1 cut(s)	1127
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	5, 631
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	218, 322, 774
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	2 cut(s)	126, 302
PspPI	GGNCC	2 cut(s)	124, 376
PstNI	CAGNNNCTG	2 cut(s)	365, 803
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	3 cut(s)	349, 594, 606
RsaNI	GTAC	3 cut(s)	348, 593, 605
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	5 cut(s)	327, 429, 726, 825, 1019
SatI	GCNGC	3 cut(s)	217, 321, 773
Sau3AI	GATC	5 cut(s)	91, 187, 226, 644, 894
Sau96I	GGNCC	2 cut(s)	124, 376
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	3 cut(s)	168, 552, 916
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	2 cut(s)	274, 565
SfcI	CTRYAG	1 cut(s)	616
SfuI	TTCGAA	1 cut(s)	680
SinI	GGWCC	2 cut(s)	124, 376
SphI	GCATGC	1 cut(s)	1006
Sse9I	AATT	8 cut(s)	21, 160, 352, 418, 504, 636, 648, 946
SsiI	CCGC	7 cut(s)	9, 59, 82, 198, 216, 304, 875
SspMI	CTAG	2 cut(s)	447, 1038
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	3 cut(s)	166, 550, 914
TaqI	TCGA	5 cut(s)	90, 186, 261, 267, 680
TasI	AATT	8 cut(s)	21, 160, 352, 418, 504, 636, 648, 946
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	5, 631
Tru1I	TTAA	5 cut(s)	327, 429, 726, 825, 1019
Tru9I	TTAA	5 cut(s)	327, 429, 726, 825, 1019
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	2 cut(s)	320, 772
TspDTI	ATGAA	1 cut(s)	441
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	2 cut(s)	124, 376
XapI	RAATTY	2 cut(s)	160, 418
XceI	RCATGY	1 cut(s)	1006
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	2 cut(s)	447, 1038
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.