Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Forward (+)

5501145 .. 5506805

Gene Structure 5661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G106200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAATTCGCTTCTTGTTCAATTCTCAGAGCTCAGCCATTTTCAACCTTCATTCTTCCCGCCAACGCCATTAACACCCACTTGTGTGCTTCATGGCCTTCATCCAAGCACAATCTCAGCTTGGCCCTTCCATTTTTCTCCACTTTCCCGAGAAATTCGACTTTCCCGGGAAAATGTCAGCACTGCGATCGTTTCACTGCTTTCAGCTCGATTTCCGGCTCCCAGGACCAGAATCCATCTCAGAAACTCGCAGTTCTTCTTGAAGTTGACGGGGTCCTTATGGATGCATACCGCTTGGGGAACCGACAAACCTTCAATGCTGCATTTCGAAAGCTTGGGCTTGACTGTGCAAGTTGGACAGAACCTGTTTATCTGGACCTCCTGAGGAAGAGTGCTGGTGATGAGGAAAAGATGCTGAATTTGTATTTCAATCGGACTGGTTGGCCTAGTTCATTGCCCACAAGTGAGAAGGCGTCATTTGTGAAAAAGGTTCTGCAAAACAAGAAAATTGCGATGGATGAGTTTTTGATGTCAGAAAGTTTACCTTTACGACCTGGAGTTGAAGAATTTATCGATGATGCATACAACGAAGGAATACCTGTGGTCATTCTGACAGCCTATAGTAAGAGTGGGGATGAAATTGCCAGATCAATTGCTGAAAGGCTTGGCCAGGAAAGAATTTCAAAGCTAAAGATCGTTGGAGATAAGGAGGTTGATCAGAGTTTGTATGGCCAATTAGCAAATAGTAACGAATTTTCCTCTGGTATGGATGAGCAACTAGCTAAGGAGGCAATAAAAGCAGTTTCTGCTGAGAAACAAAGGATTGCAGAGGAGGTTGCATCATTGCTAAAGCTGAATGTAGAGATTGATACTACCCCATCTGAAAGCTTAGAGAAGGTCATTGCTACATTGCGGGCTGGGGCAGAAAATGCTGGAGTACCAGTGTGCGATTGTGTTCTTATTGCAGGAAGCCAGTCTGGTGTAGCAGGAGCTGAGCGAGTGGGCATGCCATGTGTTGTTTTAAGAAGCAGTTTGACGGCTCGAGCTGAGTTCCCTTCAGCAAATGCAACAATGGATGGGTTTGGAGGAGCAGACCTGACCATCACTAAACTACGCAACAAGAGAAGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

41.09

Weight (kDa)

5.84

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	60, 292, 913
AcoI	YGGCCR	2 cut(s)	667, 730
AcsI	RAATTY	6 cut(s)	5, 154, 418, 566, 678, 752
AcuI	CTGAAG	1 cut(s)	1041
AcyI	GRCGYC	1 cut(s)	473
AfaI	GTAC	1 cut(s)	939
AgsI	TTSAA	7 cut(s)	21, 45, 263, 316, 430, 563, 684
AjnI	CCWGG	3 cut(s)	222, 553, 669
AleI	CACNNNNGTG	1 cut(s)	84
Alw21I	GWGCWC	1 cut(s)	34
AlwNI	CAGNNNCTG	3 cut(s)	365, 806, 992
Ama87I	CYCGRG	3 cut(s)	148, 166, 1041
AoxI	GGCC	5 cut(s)	95, 123, 443, 667, 730
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	6 cut(s)	5, 154, 418, 566, 678, 752
AspS9I	GGNCC	4 cut(s)	124, 226, 274, 376
AsuC2I	CCSGG	2 cut(s)	167, 168
AsuHPI	GGTGA	1 cut(s)	410
AsuII	TTCGAA	1 cut(s)	328
AvaI	CYCGRG	3 cut(s)	148, 166, 1041
AvaII	GGWCC	3 cut(s)	226, 274, 376
AxyI	CCTNAGG	1 cut(s)	383
BalI	TGGCCA	2 cut(s)	669, 732
BanII	GRGCYC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	5 cut(s)	244, 508, 886, 1070, 1109
BceAI	ACGGC	1 cut(s)	1053
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	3 cut(s)	224, 555, 671
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	2 cut(s)	167, 168
BfaI	CTAG	2 cut(s)	447, 779
BfmI	CTRYAG	1 cut(s)	619
BisI	GCNGC	1 cut(s)	321
BlpI	GCTNAGC	2 cut(s)	33, 993
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	5 cut(s)	167, 168, 224, 555, 671
Bme18I	GGWCC	3 cut(s)	226, 274, 376
BmeT110I	CYCGRG	3 cut(s)	148, 166, 1041
BmgT120I	GGNCC	4 cut(s)	124, 226, 274, 376
BmiI	GGNNCC	3 cut(s)	220, 275, 302
BmrFI	CCNGG	5 cut(s)	167, 168, 224, 555, 671
BmsI	GCATC	4 cut(s)	274, 402, 568, 848
BpmI	CTGGAG	2 cut(s)	576, 954
Bpu10I	CCTNAGC	1 cut(s)	783
Bpu1102I	GCTNAGC	2 cut(s)	33, 993
Bpu14I	TTCGAA	1 cut(s)	328
BpuMI	CCSGG	2 cut(s)	167, 168
Bsa29I	ATCGAT	1 cut(s)	573
BsaHI	GRCGYC	1 cut(s)	473
BsaJI	CCNNGG	2 cut(s)	166, 222
BsaXI	ACNNNNNCTCC	2 cut(s)	927, 957
Bse1I	ACTGG	3 cut(s)	442, 941, 973
Bse21I	CCTNAGG	1 cut(s)	383
Bse3DI	GCAATG	4 cut(s)	452, 842, 900, 908
BseBI	CCWGG	3 cut(s)	224, 555, 671
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	2 cut(s)	166, 222
BseGI	GGATG	6 cut(s)	101, 289, 523, 640, 775, 1081
BseMI	GCAATG	4 cut(s)	452, 842, 900, 908
BseMII	CTCAG	8 cut(s)	40, 47, 130, 254, 374, 801, 984, 1038
BseNI	ACTGG	3 cut(s)	442, 941, 973
BseRI	GAGGAG	2 cut(s)	845, 1101
BseXI	GCAGC	1 cut(s)	307
BseYI	CCCAGC	1 cut(s)	917
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	5 cut(s)	97, 125, 445, 669, 732
BshVI	ATCGAT	1 cut(s)	573
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	34
BsiHKCI	CYCGRG	3 cut(s)	148, 166, 1041
BsiSI	CCGG	2 cut(s)	167, 216
BsnI	GGCC	5 cut(s)	97, 125, 445, 669, 732
BsoBI	CYCGRG	3 cut(s)	148, 166, 1041
Bsp119I	TTCGAA	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	4 cut(s)	187, 647, 693, 715
Bsp1720I	GCTNAGC	2 cut(s)	33, 993
BspACI	CCGC	3 cut(s)	60, 292, 913
BspANI	GGCC	5 cut(s)	97, 125, 445, 669, 732
BspCNI	CTCAG	8 cut(s)	39, 46, 129, 253, 375, 802, 985, 1039
BspDI	ATCGAT	1 cut(s)	573
BspHI	TCATGA	1 cut(s)	1130
BspLI	GGNNCC	3 cut(s)	220, 275, 302
BspT104I	TTCGAA	1 cut(s)	328
BsrDI	GCAATG	4 cut(s)	452, 842, 900, 908
BsrI	ACTGG	3 cut(s)	442, 941, 973
BssECI	CCNNGG	2 cut(s)	166, 222
BssMI	GATC	4 cut(s)	187, 647, 693, 715
BssNI	GRCGYC	1 cut(s)	473
Bst2UI	CCWGG	3 cut(s)	224, 555, 671
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	1 cut(s)	383
BstACI	GRCGYC	1 cut(s)	473
BstAPI	GCANNNNNTGC	2 cut(s)	806, 929
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	915, 1007
BstF5I	GGATG	6 cut(s)	101, 289, 523, 640, 775, 1081
BstKTI	GATC	4 cut(s)	190, 650, 696, 718
BstMBI	GATC	4 cut(s)	187, 647, 693, 715
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	4 cut(s)	788, 797, 806, 929
BstNI	CCWGG	3 cut(s)	224, 555, 671
BstNSI	RCATGY	1 cut(s)	1009
BstSCI	CCNGG	5 cut(s)	165, 166, 222, 553, 669
BstSFI	CTRYAG	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	307
Bsu15I	ATCGAT	1 cut(s)	573
Bsu36I	CCTNAGG	1 cut(s)	383
BsuRI	GGCC	5 cut(s)	97, 125, 445, 669, 732
BsuTUI	ATCGAT	1 cut(s)	573
BtgZI	GCGATG	1 cut(s)	527
BtsCI	GGATG	6 cut(s)	101, 289, 523, 640, 775, 1081
BtsI	GCAGTG	2 cut(s)	181, 195
BtsIMutI	CAGTG	3 cut(s)	181, 195, 948
Cac8I	GCNNGC	2 cut(s)	915, 1007
CaiI	CAGNNNCTG	3 cut(s)	365, 806, 992
CciI	TCATGA	1 cut(s)	1130
Cfr13I	GGNCC	4 cut(s)	124, 226, 274, 376
Cfr9I	CCCGGG	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	573
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	1 cut(s)	938
CviAII	CATG	4 cut(s)	93, 1006, 1011, 1131
CviQI	GTAC	1 cut(s)	938
DpnI	GATC	4 cut(s)	189, 649, 695, 717
DpnII	GATC	4 cut(s)	187, 647, 693, 715
EaeI	YGGCCR	2 cut(s)	667, 730
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Ecl136II	GAGCTC	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	34
Eco47I	GGWCC	3 cut(s)	226, 274, 376
Eco53kI	GAGCTC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	1041
Eco81I	CCTNAGG	1 cut(s)	383
Eco88I	CYCGRG	3 cut(s)	148, 166, 1041
EcoICRI	GAGCTC	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	3 cut(s)	222, 553, 669
EcoT22I	ATGCAT	2 cut(s)	289, 583
EcoT38I	GRGCYC	1 cut(s)	34
FaeI	CATG	4 cut(s)	96, 1009, 1014, 1134
FalI	AAGNNNNNCTT	2 cut(s)	529, 561
FatI	CATG	4 cut(s)	92, 1005, 1010, 1130
FauI	CCCGC	2 cut(s)	67, 906
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	6 cut(s)	88, 296, 530, 647, 782, 1088
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	2 cut(s)	447, 779
GluI	GCNGC	1 cut(s)	321
GsaI	CCCAGC	1 cut(s)	921
GsuI	CTGGAG	2 cut(s)	576, 954
HaeIII	GGCC	5 cut(s)	97, 125, 445, 669, 732
HapII	CCGG	2 cut(s)	167, 216
HgaI	GACGC	1 cut(s)	462
Hin1I	GRCGYC	1 cut(s)	473
Hin1II	CATG	4 cut(s)	96, 1009, 1014, 1134
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	2 cut(s)	332, 886
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	2 cut(s)	167, 216
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	268, 542
Hpy188I	TCNGA	7 cut(s)	29, 243, 435, 535, 612, 720, 883
Hpy188III	TCNNGA	5 cut(s)	148, 260, 374, 382, 1131
Hpy8I	GTNNAC	2 cut(s)	268, 542
HpyAV	CCTTC	9 cut(s)	58, 108, 137, 322, 463, 584, 889, 1065, 1119
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	9 cut(s)	287, 323, 350, 496, 581, 827, 839, 965, 1067
HpyF10VI	GCNNNNNNNGC	4 cut(s)	788, 797, 806, 929
Hsp92I	GRCGYC	1 cut(s)	473
Hsp92II	CATG	4 cut(s)	96, 1009, 1014, 1134
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	4 cut(s)	187, 647, 693, 715
LmnI	GCTCC	3 cut(s)	224, 989, 1088
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	4 cut(s)	274, 402, 568, 848
MaeI	CTAG	2 cut(s)	447, 779
MaeIII	GTNAC	1 cut(s)	746
MalI	GATC	4 cut(s)	189, 649, 695, 717
MboI	GATC	4 cut(s)	187, 647, 693, 715
MboII	GAAGA	4 cut(s)	47, 248, 400, 575
MfeI	CAATTG	1 cut(s)	651
MhlI	GDGCHC	1 cut(s)	34
MlsI	TGGCCA	2 cut(s)	669, 732
MluNI	TGGCCA	2 cut(s)	669, 732
MmeI	TCCRAC	2 cut(s)	335, 679
MnlI	CCTC	9 cut(s)	378, 389, 397, 703, 769, 781, 823, 826, 1079
Mox20I	TGGCCA	2 cut(s)	669, 732
Mph1103I	ATGCAT	2 cut(s)	289, 583
MscI	TGGCCA	2 cut(s)	669, 732
MseI	TTAA	2 cut(s)	72, 1022
MslI	CAYNNNNRTG	1 cut(s)	84
Msp20I	TGGCCA	2 cut(s)	669, 732
MspI	CCGG	2 cut(s)	167, 216
MspR9I	CCNGG	5 cut(s)	167, 168, 224, 555, 671
MunI	CAATTG	1 cut(s)	651
MvaI	CCWGG	3 cut(s)	224, 555, 671
MwoI	GCNNNNNNNGC	4 cut(s)	788, 797, 806, 929
NciI	CCSGG	2 cut(s)	167, 168
NdeII	GATC	4 cut(s)	187, 647, 693, 715
NlaIII	CATG	4 cut(s)	96, 1009, 1014, 1134
NlaIV	GGNNCC	3 cut(s)	220, 275, 302
NsiI	ATGCAT	2 cut(s)	289, 583
NspI	RCATGY	1 cut(s)	1009
NspV	TTCGAA	1 cut(s)	328
OliI	CACNNNNGTG	1 cut(s)	84
PaeI	GCATGC	1 cut(s)	1009
PaeR7I	CTCGAG	1 cut(s)	1041
PagI	TCATGA	1 cut(s)	1130
PfeI	GAWTC	1 cut(s)	232
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	322
Ple19I	CGATCG	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	34
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	3 cut(s)	222, 553, 669
PspFI	CCCAGC	1 cut(s)	917
PspGI	CCWGG	3 cut(s)	222, 553, 669
PspN4I	GGNNCC	3 cut(s)	220, 275, 302
PspPI	GGNCC	4 cut(s)	124, 226, 274, 376
PspPPI	RGGWCCY	1 cut(s)	274
PspXI	VCTCGAGB	1 cut(s)	1041
PstNI	CAGNNNCTG	3 cut(s)	365, 806, 992
PsyI	GACNNNGTC	1 cut(s)	272
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	939
RsaNI	GTAC	1 cut(s)	938
RseI	CAYNNNNRTG	1 cut(s)	84
SacI	GAGCTC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	72, 1022
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	4 cut(s)	187, 647, 693, 715
Sau96I	GGNCC	4 cut(s)	124, 226, 274, 376
ScrFI	CCNGG	5 cut(s)	167, 168, 224, 555, 671
SduI	GDGCHC	1 cut(s)	34
SfaNI	GCATC	4 cut(s)	274, 402, 568, 848
SfcI	CTRYAG	1 cut(s)	619
Sfr274I	CTCGAG	1 cut(s)	1041
SfuI	TTCGAA	1 cut(s)	328
SinI	GGWCC	3 cut(s)	226, 274, 376
SlaI	CTCGAG	1 cut(s)	1041
SmaI	CCCGGG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	1041
SmoI	CTYRAG	1 cut(s)	1041
SphI	GCATGC	1 cut(s)	1009
SsiI	CCGC	3 cut(s)	60, 292, 913
SspMI	CTAG	2 cut(s)	447, 779
SstI	GAGCTC	1 cut(s)	34
StyD4I	CCNGG	5 cut(s)	165, 166, 222, 553, 669
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	5 cut(s)	158, 209, 328, 573, 1042
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	72, 1022
Tru9I	TTAA	2 cut(s)	72, 1022
TscAI	CASTG	3 cut(s)	188, 202, 948
TseI	GCWGC	1 cut(s)	320
TspDTI	ATGAA	5 cut(s)	40, 81, 90, 441, 651
TspMI	CCCGGG	1 cut(s)	166
TspRI	CASTG	3 cut(s)	188, 202, 948
Tth111I	GACNNNGTC	1 cut(s)	272
VpaK11BI	GGWCC	3 cut(s)	226, 274, 376
XapI	RAATTY	6 cut(s)	5, 154, 418, 566, 678, 752
XceI	RCATGY	1 cut(s)	1009
XhoI	CTCGAG	1 cut(s)	1041
XmaI	CCCGGG	1 cut(s)	166
XspI	CTAG	2 cut(s)	447, 779
Zsp2I	ATGCAT	2 cut(s)	289, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.