Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Forward (+)

7008118 .. 7014532

Gene Structure 6415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAATTCGCTTCCTGCTCAATTCTCAGGCCTCAGTCCTTTTCATCCATCTTTCACTATACCAACTCTCACCTCTATGCTTTCCCCAAGACCCATCTCAACTTGGGTGCCTCTCCATTTTCCCCAGCTTTCCCAAAAGACTCAACCTTTCCCGGAAAATGTCTCCACTTTCATCGCTTCACTGCTTTCAGCTCACTTTCCGGCGCCGACGACCGGAACCCATCTCAGGAACTCGCCGTTCTTCTTGAAGTTGACGGGGTTCTTATTGATGCATATCGTTTGGGTAACCGCCAAACCTTCAATGTAGCATTTAAAAAGCTCGGGCTTGACTGTGCAAATTGGACTGAACCTGTTTATGTGGACCTCCTAAGGAAGTGTGCTGGTGACGAGGAAAAGATGCTGATCATGTACTTTAACAGGATTGGTTGGCCTTCGTCATTGCCCACTACTGAGAAGGAATCCTTCGTAAAAAATGTTCTGCAAAAAAAGAAAATCGCAATGGATGAATTTCTGATGTCCAATAGTTTACCTTTACGACCTGGACTTGAAGAGTTTATTGATGATGCATACAGTGAAGGAATACCTGTGGTCATATTGACATCGTATAGTAAAAGTGGGGATGCAATTTCCAGATCCATCATAGAAAAGCTTGGCAACGAAAGAATTTTGAAGCTAAAGATTGTTGGAGAGAAGGAGGTGGAACAGAGTTTATATGGTCAGTTAGTATTAGGTAAAGTCTATTCTTCAGGTGGGGATGACGAACTAGCTAAGGAGGCAATGAAAGCAGTTTCTGCTGAGAAACAAAGGATTGCAGAGGAGGTTGCATCGATGCTGAAGTTGAATGTAGATATTGATACTACCTCATCTGAAAGCTTACAGAAGATCATAGCTGCCTTGAGGGCAGGGGCAGAAAGTGCTGGTCTACCTGTCTCCAATTGTGTTCTCATTGCAGGAAGCCAGTCAGGTGTAGAAGGAGCTCAGCGAGTGGGCATGCCATGTGTTGTTTTAAGAAGCAGTTTGACAGCTAGAGCCGAGTTCCCTTCAGCAAATGCCATAATGGACGGGTTCGGAGGAGCAGACCTAAGTATTCCTAAACTTAAAAGCAAGAAATGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

373

Amino Acids

40.7

Weight (kDa)

6.27

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	107, 203
AccI	GTMKAC	1 cut(s)	922
AciI	CCGC	1 cut(s)	289
AclWI	GGATC	1 cut(s)	627
AcsI	RAATTY	3 cut(s)	5, 506, 663
AcuI	CTGAAG	3 cut(s)	729, 854, 1026
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	213, 226
AgsI	TTSAA	5 cut(s)	248, 301, 548, 670, 841
AjnI	CCWGG	1 cut(s)	538
Alw21I	GWGCWC	1 cut(s)	979
Alw26I	GTCTC	2 cut(s)	167, 934
AlwI	GGATC	1 cut(s)	627
AlwNI	CAGNNNCTG	1 cut(s)	791
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	29, 428
ApeKI	GCWGC	1 cut(s)	890
ApoI	RAATTY	3 cut(s)	5, 506, 663
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	62, 395
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	361
AxyI	CCTNAGG	1 cut(s)	368
BanI	GGYRCC	2 cut(s)	107, 203
BanII	GRGCYC	1 cut(s)	979
Bbv12I	GWGCWC	1 cut(s)	979
BbvI	GCAGC	1 cut(s)	877
BccI	CCATC	4 cut(s)	56, 102, 229, 644
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	540
BclI	TGATCA	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	167, 934
BfaI	CTAG	2 cut(s)	764, 1026
BfoI	RGCGCY	1 cut(s)	207
BglI	GCCNNNNNGGC	1 cut(s)	899
BisI	GCNGC	1 cut(s)	891
BlpI	GCTNAGC	1 cut(s)	978
BlsI	GCNGC	1 cut(s)	892
Bme1390I	CCNGG	2 cut(s)	153, 540
Bme18I	GGWCC	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	3 cut(s)	109, 205, 218
BmrFI	CCNGG	2 cut(s)	153, 540
BmsI	GCATC	6 cut(s)	259, 387, 553, 610, 819, 833
Bpu10I	CCTNAGC	1 cut(s)	768
Bpu1102I	GCTNAGC	1 cut(s)	978
BpuEI	CTTGAG	1 cut(s)	916
BpuMI	CCSGG	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	827
BsaBI	GATNNNNATC	2 cut(s)	273, 401
BsaHI	GRCGYC	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 226
Bse1I	ACTGG	1 cut(s)	958
Bse21I	CCTNAGG	1 cut(s)	368
Bse3DI	GCAATG	4 cut(s)	437, 504, 783, 945
Bse8I	GATNNNNATC	2 cut(s)	273, 401
BseBI	CCWGG	1 cut(s)	540
BseCI	ATCGAT	1 cut(s)	827
BseGI	GGATG	4 cut(s)	44, 508, 625, 760
BseJI	GATNNNNATC	2 cut(s)	273, 401
BseLI	CCNNNNNNNGG	2 cut(s)	213, 226
BseMI	GCAATG	4 cut(s)	437, 504, 783, 945
BseMII	CTCAG	6 cut(s)	40, 47, 239, 441, 786, 992
BseNI	ACTGG	1 cut(s)	958
BseRI	GAGGAG	2 cut(s)	830, 1086
BseXI	GCAGC	1 cut(s)	877
BseYI	CCCAGC	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	31, 430
BshNI	GGYRCC	2 cut(s)	107, 203
BshVI	ATCGAT	1 cut(s)	827
BsiEI	CGRYCG	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	979
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	3 cut(s)	153, 201, 214
BslI	CCNNNNNNNGG	2 cut(s)	213, 226
BsmAI	GTCTC	2 cut(s)	167, 934
BsnI	GGCC	2 cut(s)	31, 430
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	979
Bsp143I	GATC	3 cut(s)	402, 632, 882
Bsp1720I	GCTNAGC	1 cut(s)	978
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	2 cut(s)	31, 430
BspCNI	CTCAG	6 cut(s)	39, 46, 238, 442, 787, 991
BspDI	ATCGAT	1 cut(s)	827
BspLI	GGNNCC	3 cut(s)	109, 205, 218
BspPI	GGATC	1 cut(s)	627
BspT107I	GGYRCC	2 cut(s)	107, 203
BsrDI	GCAATG	4 cut(s)	437, 504, 783, 945
BsrI	ACTGG	1 cut(s)	958
BssMI	GATC	3 cut(s)	402, 632, 882
BssNI	GRCGYC	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	332, 572
Bst6I	CTCTTC	1 cut(s)	543
BstACI	GRCGYC	1 cut(s)	204
BstAPI	GCANNNNNTGC	2 cut(s)	791, 914
BstC8I	GCNNGC	1 cut(s)	992
BstDEI	CTNAG	9 cut(s)	26, 33, 225, 368, 450, 768, 795, 978, 1082
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	4 cut(s)	44, 508, 625, 760
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	3 cut(s)	405, 635, 885
BstMAI	GTCTC	2 cut(s)	167, 934
BstMBI	GATC	3 cut(s)	402, 632, 882
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	5 cut(s)	773, 782, 791, 899, 914
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	1 cut(s)	994
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	151, 538
BstV1I	GCAGC	1 cut(s)	877
BstX2I	RGATCY	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	632
Bsu15I	ATCGAT	1 cut(s)	827
Bsu36I	CCTNAGG	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	31, 430
BsuTUI	ATCGAT	1 cut(s)	827
BtgZI	GCGATG	1 cut(s)	158
BtsCI	GGATG	4 cut(s)	44, 508, 625, 760
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	180, 577
Cac8I	GCNNGC	1 cut(s)	992
CaiI	CAGNNNCTG	1 cut(s)	791
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	361
ClaI	ATCGAT	1 cut(s)	827
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	3 cut(s)	406, 991, 996
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	9 cut(s)	26, 33, 225, 368, 450, 768, 795, 978, 1082
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	3 cut(s)	404, 634, 884
DpnII	GATC	3 cut(s)	402, 632, 882
DraI	TTTAAA	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Ecl136II	GAGCTC	1 cut(s)	977
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	979
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	977
Eco57I	CTGAAG	3 cut(s)	729, 854, 1026
Eco81I	CCTNAGG	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	977
EcoO65I	GGTNACC	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	538
EcoT22I	ATGCAT	2 cut(s)	274, 568
EcoT38I	GRGCYC	1 cut(s)	979
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
FaeI	CATG	3 cut(s)	409, 994, 999
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	3 cut(s)	405, 990, 995
FbaI	TGATCA	1 cut(s)	402
FblI	GTMKAC	1 cut(s)	922
Fnu4HI	GCNGC	1 cut(s)	891
FokI	GGATG	4 cut(s)	31, 515, 632, 767
FriOI	GRGCYC	1 cut(s)	979
Fsp4HI	GCNGC	1 cut(s)	891
FspBI	CTAG	2 cut(s)	764, 1026
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	1 cut(s)	891
GsaI	CCCAGC	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	31, 430
HapII	CCGG	3 cut(s)	153, 201, 214
HhaI	GCGC	1 cut(s)	206
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	3 cut(s)	409, 994, 999
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	2 cut(s)	647, 871
HinfI	GANTC	2 cut(s)	140, 458
HpaII	CCGG	3 cut(s)	153, 201, 214
HphI	GGTGA	2 cut(s)	62, 395
Hpy166II	GTNNAC	4 cut(s)	253, 361, 527, 923
Hpy188I	TCNGA	3 cut(s)	513, 868, 1070
Hpy188III	TCNNGA	3 cut(s)	227, 245, 630
Hpy8I	GTNNAC	4 cut(s)	253, 361, 527, 923
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	8 cut(s)	307, 441, 448, 472, 569, 685, 965, 1050
HpyCH4III	ACNGT	2 cut(s)	332, 572
HpyCH4V	TGCA	8 cut(s)	272, 335, 481, 566, 623, 812, 824, 950
HpyF10VI	GCNNNNNNNGC	5 cut(s)	773, 782, 791, 899, 914
HpyF3I	CTNAG	9 cut(s)	26, 33, 225, 368, 450, 768, 795, 978, 1082
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	409, 994, 999
HspAI	GCGC	1 cut(s)	204
KasI	GGCGCC	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	402, 632, 882
LmnI	GCTCC	2 cut(s)	974, 1073
Lsp1109I	GCAGC	1 cut(s)	877
LweI	GCATC	6 cut(s)	259, 387, 553, 610, 819, 833
MaeI	CTAG	2 cut(s)	764, 1026
MaeIII	GTNAC	2 cut(s)	284, 383
MalI	GATC	3 cut(s)	404, 634, 884
MboI	GATC	3 cut(s)	402, 632, 882
MboII	GAAGA	4 cut(s)	233, 560, 735, 892
MfeI	CAATTG	1 cut(s)	934
MflI	RGATCY	1 cut(s)	632
MhlI	GDGCHC	1 cut(s)	979
MluCI	AATT	7 cut(s)	5, 21, 337, 506, 624, 663, 934
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	664
Mph1103I	ATGCAT	2 cut(s)	274, 568
MseI	TTAA	4 cut(s)	312, 414, 1007, 1098
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	3 cut(s)	153, 201, 214
MspR9I	CCNGG	2 cut(s)	153, 540
MunI	CAATTG	1 cut(s)	934
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	5 cut(s)	773, 782, 791, 899, 914
NarI	GGCGCC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	3 cut(s)	402, 632, 882
NlaIII	CATG	3 cut(s)	409, 994, 999
NlaIV	GGNNCC	3 cut(s)	109, 205, 218
NmeAIII	GCCGAG	1 cut(s)	1057
NmuCI	GTSAC	1 cut(s)	383
NsiI	ATGCAT	2 cut(s)	274, 568
NspI	RCATGY	1 cut(s)	994
PaeI	GCATGC	1 cut(s)	994
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	458
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	892
PleI	GAGTC	1 cut(s)	134
PluTI	GGCGCC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	134
Psp124BI	GAGCTC	1 cut(s)	979
Psp6I	CCWGG	1 cut(s)	538
PspEI	GGTNACC	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	3 cut(s)	109, 205, 218
PspPI	GGNCC	1 cut(s)	361
PsrI	GAACNNNNNNTAC	2 cut(s)	459, 491
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	632
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	979
SaqAI	TTAA	4 cut(s)	312, 414, 1007, 1098
SatI	GCNGC	1 cut(s)	891
Sau3AI	GATC	3 cut(s)	402, 632, 882
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	153, 540
SduI	GDGCHC	1 cut(s)	979
SfaNI	GCATC	6 cut(s)	259, 387, 553, 610, 819, 833
SfoI	GGCGCC	1 cut(s)	205
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	895
SmoI	CTYRAG	1 cut(s)	895
SphI	GCATGC	1 cut(s)	994
Sse9I	AATT	7 cut(s)	5, 21, 337, 506, 624, 663, 934
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	289
SspDI	GGCGCC	1 cut(s)	203
SspMI	CTAG	2 cut(s)	764, 1026
SstI	GAGCTC	1 cut(s)	979
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	151, 538
TaaI	ACNGT	2 cut(s)	332, 572
TaqI	TCGA	1 cut(s)	827
TasI	AATT	7 cut(s)	5, 21, 337, 506, 624, 663, 934
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	4 cut(s)	312, 414, 1007, 1098
Tru9I	TTAA	4 cut(s)	312, 414, 1007, 1098
TscAI	CASTG	2 cut(s)	187, 577
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	1 cut(s)	890
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	4 cut(s)	33, 161, 519, 794
TspRI	CASTG	2 cut(s)	187, 577
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	3 cut(s)	5, 506, 663
XceI	RCATGY	1 cut(s)	994
XmiI	GTMKAC	1 cut(s)	922
XspI	CTAG	2 cut(s)	764, 1026
Zsp2I	ATGCAT	2 cut(s)	274, 568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.