Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Forward (+)

13705039 .. 13712029

Gene Structure 6991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29943

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAAATTCGCTTCCTGCTCTATTCTCAGGCCTCGGTCCTTCTCAACCATCTTTCACGATACCAACTCTCACCTCTATGCTTTACCCAAGAACCATCTCAACTTGCCCTCTCCATTTTCCCCTGCTTTCCCAAAAAACTCATCCTTTCCCGGAAAATGTCTCCACTTTCGTCGCTTCACTGCTTTCAGCTCACTTTCCGGCGCCGACGACCAGAACCCATCTCAGGAACTCGCTGTTCTTCTTGAAGTTGACGGGGTTCTTATGGATGCGTATCGTTTGGGTAACCGCCCATCCTTCAATGTAGCATTTAAAAAGCTCGGGCTTGACTGTGCAAACTGGACCGAACCTGTTTATTTGGATCTCTTAAGGAAGTGTGCTGGTGATGAGGAAAAGATGCTGATCATGTATTTTAATCGGATTGGTTGGCCTTCGTCATTGCCCACCACTGAGAAGGAATCATTCGTAAAAAATGTTCTGCAAAAAAAGAAAATTGCAATGGATGAGTTTCTGATGTCCAATAGTTTACCTTTGCGACCTGGACTTGAAGAATTTATTGATGATGCATACAATGAAGGAATACCTGTGGTCATATTGACATCCTATAGTAAAAGTGGGGATGCAATTTCCAGATCCGTCATTGAAAAGCTTGGCCATGAAAGAATTTTGAAGCTAAAGATTGTTGGGGATAAGGAGGTGGAACAGAGTTTATATGGTCAATTTGTATCCAGTAAAGTCTTTTCTTCAGGTGTGGATGAGGAACTAGCTAAGGAAGCAATGAAAGCAGTTTCTGCTGAGAAACAAAGGATCGCTGAGGAGGTTGCATCAATGCTAAAGTTGAATGTAGAACTTGATACTACCTCATCTAAAAGCTTACAGAAGATCATAGCTACCTTGAGGGCAGGGGCAGAAAATGCTGGACTACCTGTCTCCAATTGTGTTCTAATTGCAGGAAGCCAGTCAGGTGTAGTAGGAGCTCAGCGAGTGGGCATGCCATGTGTTGTTTTAAGAAGCAGTTTGACGGCTAGAGCTGAGTTCCCTTCAGCAAATGTGATAATGGATGGATTTGGAGGAGCAGACCTAACTATTCCTAAACTTAAAAACAAGAAATGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

371

Amino Acids

40.78

Weight (kDa)

8.59

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	3 cut(s)	366, 624, 812
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	3 cut(s)	5, 548, 660
AcuI	CTGAAG	2 cut(s)	726, 1023
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflII	CTTAAG	1 cut(s)	364
AgsI	TTSAA	6 cut(s)	245, 298, 545, 641, 667, 838
AhdI	GACNNNNNGTC	1 cut(s)	923
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	9 cut(s)	189, 316, 646, 670, 764, 870, 887, 974, 1028
AluI	AGCT	9 cut(s)	189, 316, 646, 670, 764, 870, 887, 974, 1028
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	2 cut(s)	164, 931
AlwI	GGATC	3 cut(s)	366, 624, 812
AlwNI	CAGNNNCTG	1 cut(s)	788
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	29, 425, 649
ApoI	RAATTY	3 cut(s)	5, 548, 660
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	36, 339
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	62, 392
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	36, 339
BalI	TGGCCA	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	976
Bbv12I	GWGCWC	1 cut(s)	976
BbvCI	CCTCAGC	1 cut(s)	810
BccI	CCATC	5 cut(s)	56, 102, 226, 298, 1052
BceAI	ACGGC	1 cut(s)	1035
BciT130I	CCWGG	1 cut(s)	537
BciVI	GTATCC	1 cut(s)	733
BclI	TGATCA	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	164, 931
BfaI	CTAG	2 cut(s)	761, 1023
BfmI	CTRYAG	1 cut(s)	601
BfoI	RGCGCY	1 cut(s)	204
BfrI	CTTAAG	1 cut(s)	364
BfuI	GTATCC	1 cut(s)	733
BlpI	GCTNAGC	1 cut(s)	975
Bme1390I	CCNGG	2 cut(s)	150, 537
Bme18I	GGWCC	2 cut(s)	36, 339
BmeRI	GACNNNNNGTC	1 cut(s)	923
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	36, 339
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	150, 537
BmsI	GCATC	5 cut(s)	256, 384, 550, 607, 830
Bpu10I	CCTNAGC	2 cut(s)	765, 810
Bpu1102I	GCTNAGC	1 cut(s)	975
BpuEI	CTTGAG	1 cut(s)	913
BpuMI	CCSGG	1 cut(s)	150
BsaBI	GATNNNNATC	2 cut(s)	270, 398
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	3 cut(s)	341, 726, 955
Bse3DI	GCAATG	3 cut(s)	434, 501, 780
Bse8I	GATNNNNATC	2 cut(s)	270, 398
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	8 cut(s)	140, 271, 290, 505, 596, 622, 757, 1063
BseJI	GATNNNNATC	2 cut(s)	270, 398
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	3 cut(s)	434, 501, 780
BseMII	CTCAG	7 cut(s)	40, 236, 438, 783, 801, 989, 1020
BseNI	ACTGG	3 cut(s)	341, 726, 955
BseRI	GAGGAG	2 cut(s)	827, 1083
BshFI	GGCC	3 cut(s)	31, 427, 651
BshNI	GGYRCC	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	976
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	150, 198
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	164, 931
BsnI	GGCC	3 cut(s)	31, 427, 651
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp143I	GATC	5 cut(s)	358, 399, 629, 804, 879
Bsp1720I	GCTNAGC	1 cut(s)	975
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	3 cut(s)	31, 427, 651
BspCNI	CTCAG	7 cut(s)	39, 235, 439, 784, 802, 988, 1021
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	3 cut(s)	366, 624, 812
BspT107I	GGYRCC	1 cut(s)	200
BspTI	CTTAAG	1 cut(s)	364
BsrDI	GCAATG	3 cut(s)	434, 501, 780
BsrI	ACTGG	3 cut(s)	341, 726, 955
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	5 cut(s)	358, 399, 629, 804, 879
BssNI	GRCGYC	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	201
BstAFI	CTTAAG	1 cut(s)	364
BstAPI	GCANNNNNTGC	2 cut(s)	788, 911
BstC8I	GCNNGC	1 cut(s)	989
BstDEI	CTNAG	8 cut(s)	26, 222, 447, 765, 792, 810, 975, 1029
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	8 cut(s)	140, 271, 290, 505, 596, 622, 757, 1063
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	5 cut(s)	361, 402, 632, 807, 882
BstMAI	GTCTC	2 cut(s)	164, 931
BstMBI	GATC	5 cut(s)	358, 399, 629, 804, 879
BstMWI	GCNNNNNNNGC	4 cut(s)	770, 779, 788, 911
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	1 cut(s)	991
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	148, 535
BstSFI	CTRYAG	1 cut(s)	601
BstX2I	RGATCY	2 cut(s)	358, 629
BstYI	RGATCY	2 cut(s)	358, 629
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	3 cut(s)	31, 427, 651
BtsCI	GGATG	8 cut(s)	140, 271, 290, 505, 596, 622, 757, 1063
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	177, 444
Cac8I	GCNNGC	1 cut(s)	989
CaiI	CAGNNNCTG	1 cut(s)	788
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	36, 339
CviAII	CATG	4 cut(s)	403, 653, 988, 993
DdeI	CTNAG	8 cut(s)	26, 222, 447, 765, 792, 810, 975, 1029
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	5 cut(s)	360, 401, 631, 806, 881
DpnII	GATC	5 cut(s)	358, 399, 629, 804, 879
DraI	TTTAAA	1 cut(s)	310
DriI	GACNNNNNGTC	1 cut(s)	923
EaeI	YGGCCR	1 cut(s)	649
Eam1105I	GACNNNNNGTC	1 cut(s)	923
Ecl136II	GAGCTC	1 cut(s)	974
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	976
Eco47I	GGWCC	2 cut(s)	36, 339
Eco53kI	GAGCTC	1 cut(s)	974
Eco57I	CTGAAG	2 cut(s)	726, 1023
Eco88I	CYCGRG	1 cut(s)	317
Eco91I	GGTNACC	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	974
EcoO65I	GGTNACC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	535
EcoT22I	ATGCAT	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	976
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
FaeI	CATG	4 cut(s)	406, 656, 991, 996
FatI	CATG	4 cut(s)	402, 652, 987, 992
FbaI	TGATCA	1 cut(s)	399
FokI	GGATG	8 cut(s)	127, 277, 278, 512, 583, 629, 764, 1070
FriOI	GRGCYC	1 cut(s)	976
FspBI	CTAG	2 cut(s)	761, 1023
GlaI	GCGC	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	31, 427, 651
HapII	CCGG	2 cut(s)	150, 198
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	406, 656, 991, 996
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	2 cut(s)	644, 868
HinfI	GANTC	1 cut(s)	455
HpaII	CCGG	2 cut(s)	150, 198
HphI	GGTGA	2 cut(s)	62, 392
Hpy166II	GTNNAC	2 cut(s)	250, 524
Hpy188I	TCNGA	2 cut(s)	417, 510
Hpy188III	TCNNGA	4 cut(s)	56, 224, 242, 627
Hpy8I	GTNNAC	2 cut(s)	250, 524
Hpy99I	CGWCG	2 cut(s)	174, 209
HpyAV	CCTTC	6 cut(s)	49, 304, 438, 445, 566, 1047
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	7 cut(s)	332, 478, 494, 563, 620, 821, 947
HpyF10VI	GCNNNNNNNGC	4 cut(s)	770, 779, 788, 911
HpyF3I	CTNAG	8 cut(s)	26, 222, 447, 765, 792, 810, 975, 1029
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	406, 656, 991, 996
HspAI	GCGC	1 cut(s)	201
KasI	GGCGCC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	5 cut(s)	358, 399, 629, 804, 879
LmnI	GCTCC	2 cut(s)	971, 1070
LweI	GCATC	5 cut(s)	256, 384, 550, 607, 830
MaeI	CTAG	2 cut(s)	761, 1023
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	5 cut(s)	360, 401, 631, 806, 881
MboI	GATC	5 cut(s)	358, 399, 629, 804, 879
MboII	GAAGA	4 cut(s)	230, 557, 732, 889
MfeI	CAATTG	1 cut(s)	931
MflI	RGATCY	2 cut(s)	358, 629
MhlI	GDGCHC	1 cut(s)	976
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	8 cut(s)	5, 489, 548, 621, 660, 716, 931, 942
MluNI	TGGCCA	1 cut(s)	651
Mly113I	GGCGCC	1 cut(s)	201
Mox20I	TGGCCA	1 cut(s)	651
Mph1103I	ATGCAT	1 cut(s)	565
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	5 cut(s)	309, 365, 411, 1004, 1095
MslI	CAYNNNNRTG	1 cut(s)	75
Msp20I	TGGCCA	1 cut(s)	651
MspCI	CTTAAG	1 cut(s)	364
MspI	CCGG	2 cut(s)	150, 198
MspR9I	CCNGG	2 cut(s)	150, 537
MunI	CAATTG	1 cut(s)	931
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	4 cut(s)	770, 779, 788, 911
NarI	GGCGCC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	5 cut(s)	358, 399, 629, 804, 879
NlaIII	CATG	4 cut(s)	406, 656, 991, 996
NlaIV	GGNNCC	1 cut(s)	202
NsiI	ATGCAT	1 cut(s)	565
NspI	RCATGY	1 cut(s)	991
PaeI	GCATGC	1 cut(s)	991
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	455
PfoI	TCCNGGA	1 cut(s)	148
PluTI	GGCGCC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	976
Psp6I	CCWGG	1 cut(s)	535
PspEI	GGTNACC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	36, 339
PsrI	GAACNNNNNNTAC	2 cut(s)	456, 488
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	2 cut(s)	358, 629
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	976
SaqAI	TTAA	5 cut(s)	309, 365, 411, 1004, 1095
Sau3AI	GATC	5 cut(s)	358, 399, 629, 804, 879
Sau96I	GGNCC	2 cut(s)	36, 339
ScrFI	CCNGG	2 cut(s)	150, 537
SduI	GDGCHC	1 cut(s)	976
SfaNI	GCATC	5 cut(s)	256, 384, 550, 607, 830
SfcI	CTRYAG	1 cut(s)	601
SfoI	GGCGCC	1 cut(s)	202
SinI	GGWCC	2 cut(s)	36, 339
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	364, 892
SmoI	CTYRAG	2 cut(s)	364, 892
SphI	GCATGC	1 cut(s)	991
Sse9I	AATT	8 cut(s)	5, 489, 548, 621, 660, 716, 931, 942
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	286
SspDI	GGCGCC	1 cut(s)	200
SspMI	CTAG	2 cut(s)	761, 1023
SstI	GAGCTC	1 cut(s)	976
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	148, 535
TaaI	ACNGT	1 cut(s)	329
TaqII	GACCGA	2 cut(s)	24, 356
TasI	AATT	8 cut(s)	5, 489, 548, 621, 660, 716, 931, 942
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	5 cut(s)	309, 365, 411, 1004, 1095
Tru9I	TTAA	5 cut(s)	309, 365, 411, 1004, 1095
TscAI	CASTG	2 cut(s)	184, 451
TspDTI	ATGAA	4 cut(s)	17, 585, 669, 791
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	2 cut(s)	184, 451
Vha464I	CTTAAG	1 cut(s)	364
VpaK11BI	GGWCC	2 cut(s)	36, 339
XapI	RAATTY	3 cut(s)	5, 548, 660
XceI	RCATGY	1 cut(s)	991
XspI	CTAG	2 cut(s)	761, 1023
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.