Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Forward (+)

15135170 .. 15181985

Gene Structure 46816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032436

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAATTCGCTTCCTGCTCTATTCTCAGGCCTCAGTCCTTCTCAACCATCTTTCACGATACCAGCTCTCACCTCTATGCTTTACCCAAGAACCATCTCAACTTGCCCTCTCCATTTTCCCCGACTCTCCCAAAAAACTCAACCTTTCCCGGAAAATATCTCCACTTTCATCGCTTCACTGCTTTCAGCTCACTTTCCAGCGCCGACGACCAGAACCCATCTCAGGAACTCGCTGTTCTTCTTGAAGTTGACGGGGTTCTTATGGATGCGTATCGTTTGGGTAACCGCCCATCCTTCAATATTGGTTGGCCTTCGTCATTGCCCACCACTGAGAAGGAATCATTCGTAAAAAATGTTCTGCAAAAAAAGAAAATTGCAATGGATGAGTTTCTGATGTCCAATAGTTTACCTTTGCGACCTGGACTTGAAGAATTTATTGATGATGCATACAATGAAGGAATACCTGTGGTCATATTGACATCCTATAGTAAAAGTGGGGATGCAATTTCCAGATCCATCATTGAAAAGCTTGGCCATGAAAGAATTTTGAAGCTAAAGATTGTTGGGGATAAGGAGGTGGAACAGAGTTTATATGGTCAATTTGTATCCAGTAAAGTCTTTTCTTCAGGTGTGGATGAGGAACTAGCAAAGGAAGCAATGAAAGCAGTGTCTGCTGAGAAACAAAGGATTGCTGAGGAGAAGATCATAGCTGCCTTGAGGGCCGGGGCAGAAAATGCTGGACTACCTGTCTCCAATTGTGTTCTAATTGCAGGAAGCCAGTCAGGTGTAGTAGGAGCTCAGCGAGTGGGCATGCCATGTGTTGTTTTAAGAAGCAGTTTGACGGCTAGAGCTGAGTTCCCTCAGCAAATGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

31.91

Weight (kDa)

6.61

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	507
AcoI	YGGCCR	1 cut(s)	532
AcsI	RAATTY	3 cut(s)	5, 431, 543
AcuI	CTGAAG	1 cut(s)	609
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	5 cut(s)	245, 298, 428, 524, 550
AhdI	GACNNNNNGTC	1 cut(s)	746
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	7 cut(s)	66, 189, 529, 553, 710, 797, 851
AluI	AGCT	7 cut(s)	66, 189, 529, 553, 710, 797, 851
Alw21I	GWGCWC	1 cut(s)	799
Alw26I	GTCTC	1 cut(s)	754
AlwI	GGATC	1 cut(s)	507
AlwNI	CAGNNNCTG	1 cut(s)	671
AoxI	GGCC	4 cut(s)	29, 308, 532, 720
ApeKI	GCWGC	1 cut(s)	710
ApoI	RAATTY	3 cut(s)	5, 431, 543
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	720
AsuC2I	CCSGG	2 cut(s)	150, 724
AsuHPI	GGTGA	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	799
Bbv12I	GWGCWC	1 cut(s)	799
BbvCI	CCTCAGC	2 cut(s)	693, 861
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	5 cut(s)	56, 102, 226, 298, 524
BceAI	ACGGC	1 cut(s)	858
BciT130I	CCWGG	1 cut(s)	420
BciVI	GTATCC	1 cut(s)	616
BcnI	CCSGG	2 cut(s)	150, 724
BcoDI	GTCTC	1 cut(s)	754
BfaI	CTAG	2 cut(s)	644, 846
BfmI	CTRYAG	1 cut(s)	484
BfoI	RGCGCY	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	616
BglI	GCCNNNNNGGC	1 cut(s)	719
BisI	GCNGC	1 cut(s)	711
BlpI	GCTNAGC	1 cut(s)	798
BlsI	GCNGC	1 cut(s)	712
Bme1390I	CCNGG	3 cut(s)	150, 420, 724
BmeRI	GACNNNNNGTC	1 cut(s)	746
BmgT120I	GGNCC	1 cut(s)	720
BmrFI	CCNGG	3 cut(s)	150, 420, 724
BmsI	GCATC	3 cut(s)	256, 433, 490
Bpu10I	CCTNAGC	2 cut(s)	693, 861
Bpu1102I	GCTNAGC	1 cut(s)	798
BpuEI	CTTGAG	1 cut(s)	736
BpuMI	CCSGG	2 cut(s)	150, 724
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	723
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	609, 778
Bse3DI	GCAATG	3 cut(s)	317, 384, 663
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	723
BseGI	GGATG	6 cut(s)	271, 290, 388, 479, 505, 640
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	3 cut(s)	317, 384, 663
BseMII	CTCAG	9 cut(s)	40, 47, 236, 321, 666, 684, 812, 843, 875
BseNI	ACTGG	2 cut(s)	609, 778
BseRI	GAGGAG	1 cut(s)	710
BseXI	GCAGC	1 cut(s)	697
BshFI	GGCC	4 cut(s)	31, 310, 534, 722
BsiHKAI	GWGCWC	1 cut(s)	799
BsiSI	CCGG	2 cut(s)	150, 723
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	754
BsnI	GGCC	4 cut(s)	31, 310, 534, 722
Bsp1286I	GDGCHC	1 cut(s)	799
Bsp143I	GATC	2 cut(s)	512, 702
Bsp1720I	GCTNAGC	1 cut(s)	798
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	4 cut(s)	31, 310, 534, 722
BspCNI	CTCAG	9 cut(s)	39, 46, 235, 322, 667, 685, 811, 844, 874
BspPI	GGATC	1 cut(s)	507
BsrDI	GCAATG	3 cut(s)	317, 384, 663
BsrI	ACTGG	2 cut(s)	609, 778
BssECI	CCNNGG	1 cut(s)	723
BssMI	GATC	2 cut(s)	512, 702
Bst2UI	CCWGG	1 cut(s)	420
BstAPI	GCANNNNNTGC	2 cut(s)	671, 734
BstC8I	GCNNGC	1 cut(s)	812
BstDEI	CTNAG	9 cut(s)	26, 33, 222, 330, 675, 693, 798, 852, 861
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	6 cut(s)	271, 290, 388, 479, 505, 640
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	515, 705
BstMAI	GTCTC	1 cut(s)	754
BstMBI	GATC	2 cut(s)	512, 702
BstMWI	GCNNNNNNNGC	5 cut(s)	653, 662, 671, 719, 734
BstNI	CCWGG	1 cut(s)	420
BstNSI	RCATGY	1 cut(s)	814
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	3 cut(s)	148, 418, 722
BstSFI	CTRYAG	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	697
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
BsuI	GTATCC	1 cut(s)	616
BsuRI	GGCC	4 cut(s)	31, 310, 534, 722
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	6 cut(s)	271, 290, 388, 479, 505, 640
BtsI	GCAGTG	2 cut(s)	177, 672
BtsIMutI	CAGTG	3 cut(s)	177, 327, 672
Cac8I	GCNNGC	1 cut(s)	812
CaiI	CAGNNNCTG	1 cut(s)	671
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	720
CviAII	CATG	3 cut(s)	536, 811, 816
DdeI	CTNAG	9 cut(s)	26, 33, 222, 330, 675, 693, 798, 852, 861
DpnI	GATC	2 cut(s)	514, 704
DpnII	GATC	2 cut(s)	512, 702
DriI	GACNNNNNGTC	1 cut(s)	746
EaeI	YGGCCR	1 cut(s)	532
Eam1105I	GACNNNNNGTC	1 cut(s)	746
Ecl136II	GAGCTC	1 cut(s)	797
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	799
Eco53kI	GAGCTC	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	609
Eco91I	GGTNACC	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	797
EcoO65I	GGTNACC	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	418
EcoT22I	ATGCAT	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	799
FaeI	CATG	3 cut(s)	539, 814, 819
FatI	CATG	3 cut(s)	535, 810, 815
Fnu4HI	GCNGC	1 cut(s)	711
FokI	GGATG	6 cut(s)	277, 278, 395, 466, 512, 647
FriOI	GRGCYC	1 cut(s)	799
Fsp4HI	GCNGC	1 cut(s)	711
FspBI	CTAG	2 cut(s)	644, 846
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	711
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	4 cut(s)	31, 310, 534, 722
HapII	CCGG	2 cut(s)	150, 723
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	539, 814, 819
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	2 cut(s)	124, 338
HpaII	CCGG	2 cut(s)	150, 723
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	250, 407
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	4 cut(s)	56, 224, 242, 510
Hpy8I	GTNNAC	2 cut(s)	250, 407
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	5 cut(s)	49, 304, 321, 328, 449
HpyCH4V	TGCA	5 cut(s)	361, 377, 446, 503, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	653, 662, 671, 719, 734
HpyF3I	CTNAG	9 cut(s)	26, 33, 222, 330, 675, 693, 798, 852, 861
Hsp92II	CATG	3 cut(s)	539, 814, 819
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	512, 702
LmnI	GCTCC	1 cut(s)	794
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	3 cut(s)	256, 433, 490
MaeI	CTAG	2 cut(s)	644, 846
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	514, 704
MboI	GATC	2 cut(s)	512, 702
MboII	GAAGA	4 cut(s)	230, 440, 615, 712
MfeI	CAATTG	1 cut(s)	754
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	1 cut(s)	799
MlsI	TGGCCA	1 cut(s)	534
MluCI	AATT	8 cut(s)	5, 372, 431, 504, 543, 599, 754, 765
MluNI	TGGCCA	1 cut(s)	534
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	8 cut(s)	42, 83, 118, 568, 631, 688, 711, 870
Mox20I	TGGCCA	1 cut(s)	534
Mph1103I	ATGCAT	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	1 cut(s)	827
MslI	CAYNNNNRTG	1 cut(s)	75
Msp20I	TGGCCA	1 cut(s)	534
MspI	CCGG	2 cut(s)	150, 723
MspR9I	CCNGG	3 cut(s)	150, 420, 724
MunI	CAATTG	1 cut(s)	754
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	5 cut(s)	653, 662, 671, 719, 734
NciI	CCSGG	2 cut(s)	150, 724
NdeII	GATC	2 cut(s)	512, 702
NlaIII	CATG	3 cut(s)	539, 814, 819
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	1 cut(s)	814
PaeI	GCATGC	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	338
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	712
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp124BI	GAGCTC	1 cut(s)	799
Psp6I	CCWGG	1 cut(s)	418
PspEI	GGTNACC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	720
PsrI	GAACNNNNNNTAC	2 cut(s)	339, 371
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	799
SaqAI	TTAA	1 cut(s)	827
SatI	GCNGC	1 cut(s)	711
Sau3AI	GATC	2 cut(s)	512, 702
Sau96I	GGNCC	1 cut(s)	720
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	3 cut(s)	150, 420, 724
SduI	GDGCHC	1 cut(s)	799
SfaNI	GCATC	3 cut(s)	256, 433, 490
SfcI	CTRYAG	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	715
SmoI	CTYRAG	1 cut(s)	715
SphI	GCATGC	1 cut(s)	814
Sse9I	AATT	8 cut(s)	5, 372, 431, 504, 543, 599, 754, 765
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	286
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	2 cut(s)	644, 846
SstI	GAGCTC	1 cut(s)	799
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	3 cut(s)	148, 418, 722
TasI	AATT	8 cut(s)	5, 372, 431, 504, 543, 599, 754, 765
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	827
Tru9I	TTAA	1 cut(s)	827
TscAI	CASTG	3 cut(s)	184, 334, 672
TseI	GCWGC	1 cut(s)	710
TspDTI	ATGAA	4 cut(s)	158, 468, 552, 674
TspRI	CASTG	3 cut(s)	184, 334, 672
XapI	RAATTY	3 cut(s)	5, 431, 543
XceI	RCATGY	1 cut(s)	814
XspI	CTAG	2 cut(s)	644, 846
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.