Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Forward (+)

14579530 .. 14585206

Gene Structure 5677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG140600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGATGTATGCAATTATGTGTTTATGTCACGCTATTATCTTCTTGATACTGTCAGCATTTAAAAAGCTCGGGCTTGACTGTGCAAACTGGACCGAACCTGTTTATTTGGATCTCTTAAGGAAGTGTGCTAGTGATGAGGAAAAGATGCTGATCATGTATTTTAATCGGATTGGTTGGCCTTCGTCATTGCCCACCACTGAGAAGGAATCATTCGTAAAAAATGTTCTGCAAAAAAAGAAAATTGCAATGGATGAGTTTCTGATGTCCAATAGTTTACCTTTGCGACCTGGACTTGAAGAATTTATTGATGATGCATACAATGAAGGAATACCTGTGGTCATATTGACATCCTATAGTAAAAGTGGGGATGCAATTTCCAGATCCATCATTGAAAAGCTTGGCCATGAAAGAATTTTGAAGCTAAAGATTGTTGGGGATAAGGAGGTGGAACAGAGTTTATATGGTCAATTTGTATCCAGTAAAGTCTTTTCTTCAGGTGTGGATGAGGAACTAGCTAAGGAAGCAATGAAAGCAGTTTCTGCTGAGAAACAAAGGATTGCTGAGGAGGTTGCATCAATGCTAAAGTTGAATGTAGAACTTGATACTACCTCATCTAAAAGCTTACAGAAGGTCATAGCTACCTTGAGGGCAGGGGCAGAAAATGCTGGACTACCTGTCTCCAATTGTGTTCTAATTGCAGGAAGCCAGTCAGGTGTAGTAGGAGCTCAGCGAGTGGGCATGCCATGTGTTGTTTTAAGAAGCAGTTTGACGGCTAGAGCTGAGTTCCCTTCAGCAAATGCGATAATGGATGGATTTGGAGGAGCAGACCTAACTATTCCTAAACTTAAAAACAAGAAATGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

31.59

Weight (kDa)

7.53

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	117, 375
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	2 cut(s)	299, 411
AcuI	CTGAAG	2 cut(s)	477, 774
AflII	CTTAAG	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	296, 392, 418, 589
AhdI	GACNNNNNGTC	1 cut(s)	674
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	8 cut(s)	67, 397, 421, 515, 621, 638, 725, 779
AluI	AGCT	8 cut(s)	67, 397, 421, 515, 621, 638, 725, 779
Alw21I	GWGCWC	1 cut(s)	727
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	2 cut(s)	117, 375
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	2 cut(s)	176, 400
ApoI	RAATTY	2 cut(s)	299, 411
AspS9I	GGNCC	1 cut(s)	90
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	727
Bbv12I	GWGCWC	1 cut(s)	727
BbvCI	CCTCAGC	1 cut(s)	561
BccI	CCATC	2 cut(s)	392, 803
BceAI	ACGGC	1 cut(s)	786
BciT130I	CCWGG	1 cut(s)	288
BciVI	GTATCC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	682
BfaI	CTAG	3 cut(s)	129, 512, 774
BfmI	CTRYAG	1 cut(s)	352
BfrI	CTTAAG	1 cut(s)	115
BfuI	GTATCC	1 cut(s)	484
BlpI	GCTNAGC	1 cut(s)	726
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	90
BmeRI	GACNNNNNGTC	1 cut(s)	674
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	4 cut(s)	135, 301, 358, 581
Bpu10I	CCTNAGC	2 cut(s)	516, 561
Bpu1102I	GCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	664
BsaBI	GATNNNNATC	1 cut(s)	149
Bse1I	ACTGG	3 cut(s)	92, 477, 706
Bse3DI	GCAATG	3 cut(s)	185, 252, 531
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	288
BseGI	GGATG	5 cut(s)	256, 347, 373, 508, 814
BseJI	GATNNNNATC	1 cut(s)	149
BseMI	GCAATG	3 cut(s)	185, 252, 531
BseMII	CTCAG	5 cut(s)	189, 534, 552, 740, 771
BseNI	ACTGG	3 cut(s)	92, 477, 706
BseRI	GAGGAG	2 cut(s)	578, 834
BshFI	GGCC	2 cut(s)	178, 402
BsiHKAI	GWGCWC	1 cut(s)	727
BsiHKCI	CYCGRG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	682
BsnI	GGCC	2 cut(s)	178, 402
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	727
Bsp143I	GATC	3 cut(s)	109, 150, 380
Bsp1720I	GCTNAGC	1 cut(s)	726
BspANI	GGCC	2 cut(s)	178, 402
BspCNI	CTCAG	5 cut(s)	190, 535, 553, 739, 772
BspPI	GGATC	2 cut(s)	117, 375
BspTI	CTTAAG	1 cut(s)	115
BsrDI	GCAATG	3 cut(s)	185, 252, 531
BsrI	ACTGG	3 cut(s)	92, 477, 706
BssMI	GATC	3 cut(s)	109, 150, 380
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	51, 80
BstAFI	CTTAAG	1 cut(s)	115
BstAPI	GCANNNNNTGC	2 cut(s)	539, 662
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	6 cut(s)	198, 516, 543, 561, 726, 780
BstF5I	GGATG	5 cut(s)	256, 347, 373, 508, 814
BstKTI	GATC	3 cut(s)	112, 153, 383
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	3 cut(s)	109, 150, 380
BstMWI	GCNNNNNNNGC	4 cut(s)	521, 530, 539, 662
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	352
BstX2I	RGATCY	2 cut(s)	109, 380
BstYI	RGATCY	2 cut(s)	109, 380
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	2 cut(s)	178, 402
BtsCI	GGATG	5 cut(s)	256, 347, 373, 508, 814
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	740
CaiI	CAGNNNCTG	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	90
CviAII	CATG	4 cut(s)	154, 404, 739, 744
DdeI	CTNAG	6 cut(s)	198, 516, 543, 561, 726, 780
DpnI	GATC	3 cut(s)	111, 152, 382
DpnII	GATC	3 cut(s)	109, 150, 380
DraI	TTTAAA	1 cut(s)	61
DriI	GACNNNNNGTC	1 cut(s)	674
EaeI	YGGCCR	1 cut(s)	400
Eam1105I	GACNNNNNGTC	1 cut(s)	674
Ecl136II	GAGCTC	1 cut(s)	725
Eco24I	GRGCYC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	725
Eco57I	CTGAAG	2 cut(s)	477, 774
Eco88I	CYCGRG	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	727
FaeI	CATG	4 cut(s)	157, 407, 742, 747
FatI	CATG	4 cut(s)	153, 403, 738, 743
FbaI	TGATCA	1 cut(s)	150
FokI	GGATG	5 cut(s)	263, 334, 380, 515, 821
FriOI	GRGCYC	1 cut(s)	727
FspBI	CTAG	3 cut(s)	129, 512, 774
HaeIII	GGCC	2 cut(s)	178, 402
Hin1II	CATG	4 cut(s)	157, 407, 742, 747
HindIII	AAGCTT	2 cut(s)	395, 619
HinfI	GANTC	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	168, 261
Hpy188III	TCNNGA	2 cut(s)	43, 378
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	5 cut(s)	189, 196, 317, 622, 798
HpyCH4III	ACNGT	2 cut(s)	51, 80
HpyCH4V	TGCA	8 cut(s)	11, 83, 229, 245, 314, 371, 572, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	521, 530, 539, 662
HpyF3I	CTNAG	6 cut(s)	198, 516, 543, 561, 726, 780
Hsp92II	CATG	4 cut(s)	157, 407, 742, 747
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	109, 150, 380
LmnI	GCTCC	2 cut(s)	722, 821
LweI	GCATC	4 cut(s)	135, 301, 358, 581
MaeI	CTAG	3 cut(s)	129, 512, 774
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	3 cut(s)	111, 152, 382
MboI	GATC	3 cut(s)	109, 150, 380
MboII	GAAGA	3 cut(s)	31, 308, 483
MfeI	CAATTG	1 cut(s)	682
MflI	RGATCY	2 cut(s)	109, 380
MhlI	GDGCHC	1 cut(s)	727
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	8 cut(s)	12, 240, 299, 372, 411, 467, 682, 693
MluNI	TGGCCA	1 cut(s)	402
MnlI	CCTC	8 cut(s)	130, 436, 499, 556, 559, 619, 639, 812
Mox20I	TGGCCA	1 cut(s)	402
Mph1103I	ATGCAT	1 cut(s)	316
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	5 cut(s)	60, 116, 162, 755, 846
Msp20I	TGGCCA	1 cut(s)	402
MspCI	CTTAAG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	682
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	4 cut(s)	521, 530, 539, 662
NdeII	GATC	3 cut(s)	109, 150, 380
NlaIII	CATG	4 cut(s)	157, 407, 742, 747
NmuCI	GTSAC	1 cut(s)	26
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	742
PaeI	GCATGC	1 cut(s)	742
PfeI	GAWTC	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	727
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	90
PsrI	GAACNNNNNNTAC	2 cut(s)	207, 239
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	2 cut(s)	109, 380
SacI	GAGCTC	1 cut(s)	727
SaqAI	TTAA	5 cut(s)	60, 116, 162, 755, 846
Sau3AI	GATC	3 cut(s)	109, 150, 380
Sau96I	GGNCC	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	727
SfaNI	GCATC	4 cut(s)	135, 301, 358, 581
SfcI	CTRYAG	1 cut(s)	352
SinI	GGWCC	1 cut(s)	90
SmlI	CTYRAG	2 cut(s)	115, 643
SmoI	CTYRAG	2 cut(s)	115, 643
SphI	GCATGC	1 cut(s)	742
Sse9I	AATT	8 cut(s)	12, 240, 299, 372, 411, 467, 682, 693
SspMI	CTAG	3 cut(s)	129, 512, 774
SstI	GAGCTC	1 cut(s)	727
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	51, 80
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	8 cut(s)	12, 240, 299, 372, 411, 467, 682, 693
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	5 cut(s)	60, 116, 162, 755, 846
Tru9I	TTAA	5 cut(s)	60, 116, 162, 755, 846
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	3 cut(s)	336, 420, 542
TspRI	CASTG	1 cut(s)	202
Vha464I	CTTAAG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	2 cut(s)	299, 411
XceI	RCATGY	1 cut(s)	742
XspI	CTAG	3 cut(s)	129, 512, 774
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.