Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002931

Physical Location & Seq

Genomic Coordinates Reverse (-)

18274179 .. 18276586

Gene Structure 2408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGCTTACAACTACAATATGCATACTTCATCAAGAGTAGCTATCATAGGTGCGGGTGTTAGCGGTTTAGCTGCCGCTAAGCACTTAGCACGTCACCATCCACAAGTCTTTGAAGCCTCTGATTCGATTGGAGGTGTTTGGAGAAAATGTACGTATGAAACAACTAAGCTCCAGTCGGTTCGAGTAAGCTATGAGCTCTCCGATTTCCTTTGGCCGAACAGAGGCGAAAGCAGCTTCCCAACTTATGTCGATGTATTGGATTATTTGGAGGCTTATGCAAAGCATTTTAACCTTGTAAAGTTTATAAAATTCAACTCCAAAGTCGTTGAACTTAGGTTCATCGGTGATGGTAAGACTTTGCAGATGGGAGACCTCGGTGCTTACGGCAACTTGTTGCCTGGAAAACCTGTCTGGGAAGTTGCCGTTAATACCGGGGATGGAGACATCCAGTGGCATGCATTTGAGTACGTGGTAGTATGTGCAGGAAAATATGGCGATGTACCAAGAACCCCCACGTTTCCGGTGAAGAAAGGACCGGAGATATTCAAAGGGAAAGTGTTGCATTCCATGGATTACTCCAAGTTGCAGAAAGAAAAAGCTTCTCAACTCCTCCATGGCAAGAAAGTGGCCGTGATTGGTTTCAAGAAATCAGCCATTGATTTGGCGTTAGAGTCTGCATTAGCTAATCAAGGAAAAGAAGGGAAAACATGCACAATGGTGGTGAGAACACCACATTGGGTGATCCCACATTATTGGCGTGCCACAGTTTCCAAATTCATCGAATCATATGTTTTGTGGAAGCTTCCGTTAGAGAAATATGGTCTTAAACCGGACCATGCATTCGAGGAGGACTATGCTTCTTGTCAAATGGCGCTCGTGCCAGAGAAATTCTTTGAAGAAGCGGATAAGGGAATGATCCGTTTCAAAAGGACAACAAATTGGTGGTTTTATGATGAAGGGATTGAGTTTGAGGATGGCACTACCCTAGAAGCTGATGTTGTGATACTTGCGACAGGATATGATGGCATGAAGAAGCTCAAAGCCATTGTCCCTGAACCTTTTCGATCATGGCTTGAGTTTCCTTGGGGTATCATGCCTTTATACAGGGGAACAATCCATCCGTTGATACCAAACATGGGTTTCATCGGATATGTTCAAAGCAGCTCTAATTTGAAATCATCAGAATTACATTCAAGGTGGCTCAGTCAGCTCTTGGACGGTAAATTCACATTACCGAGCAAAGAAAAGATGTTGGATCAATTCCTTAAAGAAATGCACGTTATGAGAAGATCAAGCAGATTCTTCAAAAATCATTGCTTCTCCACTTTCAGCATTCAACATGCCGATGATTTGTCTAAAGACATGAATCTCAAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

459

Amino Acids

52.32

Weight (kDa)

8.85

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	11 - 248	8.2e-24	Flavin-binding monooxygenase-like
Pyr_redox_2	PF07992	12 - 247	8.6e-06	Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8	PF13450	15 - 65	5.8e-07	NAD(P)-binding Rossmann-like domain
FMO-like	PF00743	270 - 459	6.3e-09	Flavin-binding monooxygenase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19250 AT5G45180
fragaria_vesca	FvH4_1g09240 FvH4_2g37000
malus_domestica	MD02G1099600.v1.1 MD08G1046700.v1.1 MD08G1046800.v1.1 MD15G1047200.v1.1 MD15G1222400.v1.1
prunus_persica	Prupe.1G401400_v2.0.a1 Prupe.7G193500_v2.0.a1
pyrus_communis	pycom02g07750 pycom08g03910 pycom08g03920 pycom15g04540 pycom15g04600
rosa_chinensis	RchiOBHm_Chr2g0095771 RchiOBHm_Chr6g0304751
rosa_laevigata	RLG00000010953 RLG00000016591
rosa_multiflora	Rmu_co8416307.1_g000001 Rmu_sc0031036.1_g000001 Rmu_ssc0000139.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146110 Rroxscaffold_7G00163530
rosa_rugosa	Rorug02G0053100 Rorug06G0334200
rosa_samantha	Rh2AG101500 Rh2AG101600 Rh2BG103200 Rh2CG105500 Rh2DG102900 Rh6AG446100 Rh6BG455500 Rh6CG459500 Rh6DG446400
rosa_wichuraiana	Rw2G007710 Rw6G038810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
AciI	CCGC	4 cut(s)	53, 63, 75, 902
AclWI	GGATC	3 cut(s)	736, 910, 1263
AcoI	YGGCCR	2 cut(s)	212, 627
AcsI	RAATTY	4 cut(s)	308, 773, 887, 1223
AfaI	GTAC	3 cut(s)	151, 467, 501
AfiI	CCNNNNNNNGG	2 cut(s)	221, 1136
AjiI	CACGTC	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	718, 750
AleI	CACNNNNGTG	1 cut(s)	716
AloI	GAACNNNNNNTCC	2 cut(s)	1102, 1134
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	2 cut(s)	363, 435
AlwI	GGATC	3 cut(s)	736, 910, 1263
AoxI	GGCC	2 cut(s)	212, 627
ApeKI	GCWGC	3 cut(s)	71, 231, 1161
ApoI	RAATTY	4 cut(s)	308, 773, 887, 1223
ArsI	GACNNNNNNTTYG	4 cut(s)	824, 856, 1032, 1064
Asp700I	GAANNNNTTC	1 cut(s)	1059
AspLEI	GCGC	1 cut(s)	874
AspS9I	GGNCC	2 cut(s)	533, 832
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	5 cut(s)	86, 356, 535, 733, 751
AvaII	GGWCC	2 cut(s)	533, 832
BanII	GRGCYC	1 cut(s)	198
BauI	CACGAG	1 cut(s)	875
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	58, 243, 1173
BccI	CCATC	7 cut(s)	105, 341, 358, 431, 968, 1016, 1125
BceAI	ACGGC	3 cut(s)	400, 407, 614
BciT130I	CCWGG	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	2 cut(s)	363, 435
BfaI	CTAG	1 cut(s)	986
BfoI	RGCGCY	1 cut(s)	875
BisI	GCNGC	4 cut(s)	72, 75, 232, 1162
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	4 cut(s)	73, 76, 233, 1163
Bme1390I	CCNGG	2 cut(s)	399, 433
Bme18I	GGWCC	2 cut(s)	533, 832
BmgBI	CACGTC	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	533, 832
BmrFI	CCNGG	2 cut(s)	399, 433
BpmI	CTGGAG	1 cut(s)	155
Bpu1102I	GCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	1094, 1355
BpuMI	CCSGG	1 cut(s)	433
BsaAI	YACGTR	2 cut(s)	153, 469
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	5 cut(s)	373, 432, 567, 613, 1082
BsaWI	WCCGGW	3 cut(s)	520, 535, 829
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 1136
Bse1I	ACTGG	2 cut(s)	172, 448
Bse3DI	GCAATG	1 cut(s)	1312
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	5 cut(s)	373, 432, 567, 613, 1082
BseGI	GGATG	5 cut(s)	97, 442, 444, 979, 1117
BseLI	CCNNNNNNNGG	2 cut(s)	221, 1136
BseMI	GCAATG	1 cut(s)	1312
BseMII	CTCAG	1 cut(s)	1216
BseNI	ACTGG	2 cut(s)	172, 448
BseRI	GAGGAG	2 cut(s)	599, 860
BseXI	GCAGC	3 cut(s)	58, 243, 1173
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	2 cut(s)	214, 629
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	4 cut(s)	432, 521, 536, 830
BslFI	GGGAC	1 cut(s)	1034
BslI	CCNNNNNNNGG	2 cut(s)	221, 1136
BsmAI	GTCTC	2 cut(s)	363, 435
BsmFI	GGGAC	1 cut(s)	1034
BsmI	GAATGC	3 cut(s)	562, 839, 1332
BsnI	GGCC	2 cut(s)	214, 629
Bso31I	GGTCTC	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	5 cut(s)	741, 915, 1064, 1255, 1289
Bsp1720I	GCTNAGC	1 cut(s)	78
Bsp19I	CCATGG	2 cut(s)	567, 613
BspACI	CCGC	4 cut(s)	53, 63, 75, 902
BspANI	GGCC	2 cut(s)	214, 629
BspCNI	CTCAG	1 cut(s)	1215
BspPI	GGATC	3 cut(s)	736, 910, 1263
BspTNI	GGTCTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	1312
BsrI	ACTGG	2 cut(s)	172, 448
BssECI	CCNNGG	5 cut(s)	373, 432, 567, 613, 1082
BssMI	GATC	5 cut(s)	741, 915, 1064, 1255, 1289
BssSI	CACGAG	1 cut(s)	875
BssT1I	CCWWGG	3 cut(s)	567, 613, 1082
Bst2BI	CACGAG	1 cut(s)	875
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	2 cut(s)	766, 1220
BstBAI	YACGTR	2 cut(s)	153, 469
BstC8I	GCNNGC	2 cut(s)	456, 759
BstDEI	CTNAG	6 cut(s)	78, 85, 165, 332, 1202, 1377
BstDSI	CCRYGG	2 cut(s)	567, 613
BstF5I	GGATG	5 cut(s)	97, 442, 444, 979, 1117
BstH2I	RGCGCY	1 cut(s)	875
BstHHI	GCGC	1 cut(s)	874
BstKTI	GATC	5 cut(s)	744, 918, 1067, 1258, 1292
BstMAI	GTCTC	2 cut(s)	363, 435
BstMBI	GATC	5 cut(s)	741, 915, 1064, 1255, 1289
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 1207
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	3 cut(s)	458, 711, 1343
BstSCI	CCNGG	2 cut(s)	397, 431
BstSNI	TACGTA	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	58, 243, 1173
BstXI	CCANNNNNNTGG	2 cut(s)	661, 753
BsuRI	GGCC	2 cut(s)	214, 629
BtgI	CCRYGG	2 cut(s)	567, 613
BtgZI	GCGATG	1 cut(s)	510
BtrI	CACGTC	1 cut(s)	92
BtsCI	GGATG	5 cut(s)	97, 442, 444, 979, 1117
BtsIMutI	CAGTG	1 cut(s)	455
Cac8I	GCNNGC	2 cut(s)	456, 759
CfoI	GCGC	1 cut(s)	874
Cfr13I	GGNCC	2 cut(s)	533, 832
Csp6I	GTAC	3 cut(s)	150, 466, 500
CviQI	GTAC	3 cut(s)	150, 466, 500
DdeI	CTNAG	6 cut(s)	78, 85, 165, 332, 1202, 1377
DpnI	GATC	5 cut(s)	743, 917, 1066, 1257, 1291
DpnII	GATC	5 cut(s)	741, 915, 1064, 1255, 1289
EaeI	YGGCCR	2 cut(s)	212, 627
Ecl136II	GAGCTC	1 cut(s)	196
Eco105I	TACGTA	1 cut(s)	153
Eco130I	CCWWGG	3 cut(s)	567, 613, 1082
Eco24I	GRGCYC	1 cut(s)	198
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	533, 832
Eco53kI	GAGCTC	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	3 cut(s)	567, 613, 1082
EcoT22I	ATGCAT	3 cut(s)	24, 460, 841
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	3 cut(s)	567, 613, 1082
FaqI	GGGAC	1 cut(s)	1034
FauI	CCCGC	1 cut(s)	46
FauNDI	CATATG	1 cut(s)	787
Fnu4HI	GCNGC	4 cut(s)	72, 75, 232, 1162
FokI	GGATG	5 cut(s)	84, 431, 449, 986, 1104
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	4 cut(s)	72, 75, 232, 1162
FspBI	CTAG	1 cut(s)	986
GlaI	GCGC	1 cut(s)	873
GluI	GCNGC	4 cut(s)	72, 75, 232, 1162
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	875
HaeIII	GGCC	2 cut(s)	214, 629
HapII	CCGG	4 cut(s)	432, 521, 536, 830
HhaI	GCGC	1 cut(s)	874
Hin6I	GCGC	1 cut(s)	872
HinP1I	GCGC	1 cut(s)	872
HindIII	AAGCTT	2 cut(s)	597, 800
HinfI	GANTC	5 cut(s)	122, 671, 782, 1299, 1366
HpaII	CCGG	4 cut(s)	432, 521, 536, 830
HphI	GGTGA	5 cut(s)	86, 356, 535, 733, 751
Hpy188I	TCNGA	4 cut(s)	121, 202, 1148, 1183
Hpy188III	TCNNGA	2 cut(s)	33, 643
HpyAV	CCTTC	2 cut(s)	692, 950
HpyCH4III	ACNGT	2 cut(s)	766, 1220
HpyCH4IV	ACGT	5 cut(s)	91, 152, 468, 515, 1278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 1207
HpyF3I	CTNAG	6 cut(s)	78, 85, 165, 332, 1202, 1377
HpySE526I	ACGT	5 cut(s)	91, 152, 468, 515, 1278
HspAI	GCGC	1 cut(s)	872
Kzo9I	GATC	5 cut(s)	741, 915, 1064, 1255, 1289
LmnI	GCTCC	1 cut(s)	174
Lsp1109I	GCAGC	3 cut(s)	58, 243, 1173
MaeI	CTAG	1 cut(s)	986
MaeII	ACGT	5 cut(s)	91, 152, 468, 515, 1278
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	5 cut(s)	743, 917, 1066, 1257, 1291
MboI	GATC	5 cut(s)	741, 915, 1064, 1255, 1289
MboII	GAAGA	5 cut(s)	538, 908, 1042, 1294, 1299
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	8 cut(s)	308, 773, 887, 937, 1168, 1184, 1223, 1259
MlyI	GAGTC	1 cut(s)	680
MmeI	TCCRAC	1 cut(s)	1233
MnlI	CCTC	9 cut(s)	125, 127, 215, 262, 383, 620, 838, 841, 964
Mph1103I	ATGCAT	3 cut(s)	24, 460, 841
MroXI	GAANNNNTTC	1 cut(s)	1059
MseI	TTAA	4 cut(s)	288, 426, 825, 1266
MslI	CAYNNNNRTG	2 cut(s)	716, 1344
MspI	CCGG	4 cut(s)	432, 521, 536, 830
MspR9I	CCNGG	2 cut(s)	399, 433
Mva1269I	GAATGC	3 cut(s)	562, 839, 1332
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	231, 1207
NciI	CCSGG	1 cut(s)	433
NcoI	CCATGG	2 cut(s)	567, 613
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	5 cut(s)	741, 915, 1064, 1255, 1289
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	3 cut(s)	24, 460, 841
NspI	RCATGY	3 cut(s)	458, 711, 1343
OliI	CACNNNNGTG	1 cut(s)	716
PaeI	GCATGC	1 cut(s)	458
PctI	GAATGC	3 cut(s)	562, 839, 1332
PdmI	GAANNNNTTC	1 cut(s)	1059
PfeI	GAWTC	4 cut(s)	122, 782, 1299, 1366
PkrI	GCNGC	4 cut(s)	73, 76, 233, 1163
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
Ppu21I	YACGTR	2 cut(s)	153, 469
PsiI	TTATAA	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspPI	GGNCC	2 cut(s)	533, 832
RsaI	GTAC	3 cut(s)	151, 467, 501
RsaNI	GTAC	3 cut(s)	150, 466, 500
RseI	CAYNNNNRTG	2 cut(s)	716, 1344
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	4 cut(s)	288, 426, 825, 1266
SatI	GCNGC	4 cut(s)	72, 75, 232, 1162
Sau3AI	GATC	5 cut(s)	741, 915, 1064, 1255, 1289
Sau96I	GGNCC	2 cut(s)	533, 832
SchI	GAGTC	1 cut(s)	680
ScrFI	CCNGG	2 cut(s)	399, 433
SduI	GDGCHC	1 cut(s)	198
SinI	GGWCC	2 cut(s)	533, 832
SmiMI	CAYNNNNRTG	2 cut(s)	716, 1344
SmlI	CTYRAG	2 cut(s)	1073, 1370
SmoI	CTYRAG	2 cut(s)	1073, 1370
SnaBI	TACGTA	1 cut(s)	153
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	8 cut(s)	308, 773, 887, 937, 1168, 1184, 1223, 1259
SsiI	CCGC	4 cut(s)	53, 63, 75, 902
SspMI	CTAG	1 cut(s)	986
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	397, 431
StyI	CCWWGG	3 cut(s)	567, 613, 1082
TaaI	ACNGT	2 cut(s)	766, 1220
TaiI	ACGT	5 cut(s)	94, 155, 471, 518, 1281
TaqI	TCGA	6 cut(s)	125, 181, 249, 780, 843, 1063
TasI	AATT	8 cut(s)	308, 773, 887, 937, 1168, 1184, 1223, 1259
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	4 cut(s)	122, 782, 1299, 1366
Tru1I	TTAA	4 cut(s)	288, 426, 825, 1266
Tru9I	TTAA	4 cut(s)	288, 426, 825, 1266
TscAI	CASTG	1 cut(s)	455
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	3 cut(s)	71, 231, 1161
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	8 cut(s)	18, 171, 328, 766, 969, 1043, 1132, 1379
TspGWI	ACGGA	3 cut(s)	795, 908, 1110
TspRI	CASTG	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	533, 832
XapI	RAATTY	4 cut(s)	308, 773, 887, 1223
XceI	RCATGY	3 cut(s)	458, 711, 1343
XmnI	GAANNNNTTC	1 cut(s)	1059
XspI	CTAG	1 cut(s)	986
Zsp2I	ATGCAT	3 cut(s)	24, 460, 841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.