Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8416307.1

Orthogroup ID

OG0002931

Physical Location & Seq

Genomic Coordinates Reverse (-)

124 .. 1304

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8416307.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggtggtaaggactttgcattggactgttccatcatattggatttggggacttccatttttcctgttttattcaacaaggtcttctcaattccttcatgaaagaccaaaccagagcttcctgaaagccctcttctgccttttttcatccccaatgaggaaggcggtttccaagttcatagagtcatacttgctgtggaagcttcctctagtgaagtacggcctaaaacctgagcacccatttttggaggactatgcttcttgccagatggctattttgcctgagaactttttccctgaggcagacaagggtaacatacagtttaaaagggcatcaaagtggtggttttggaatggtggaattgaatttgaagacaacaccagactggaggctgatgttgttcttcttgctactggttatgagggaaagaagaagctcctgtctgtattgcctgagcctttccgcagcctcatgcttgactcttctggcactatgcccttatacaggggtacaatccatccactgattcccaacatggcatttgtgggtttcatagagagtgtttcgaatctgcacacagcagagttgagatgcaaatggctatcaagagttgttgacaaggagttcaagcttccgactgtgaaagaaatgcttgatcagataagcagagagatggaagtgatgaagaggacgacgagattttacaagagacactgcatttccactttcagcatcaaccacagtgatgagatttgtgaagaaatgggctggaagtcttggaggaagagcaactggttttcagaggcttttagcccttacaacagccgagactataatgaagagaaagaggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

284

Amino Acids

33.61

Weight (kDa)

8.48

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19250 AT5G45180
fragaria_vesca	FvH4_1g09240 FvH4_2g37000
malus_domestica	MD02G1099600.v1.1 MD08G1046700.v1.1 MD08G1046800.v1.1 MD15G1047200.v1.1 MD15G1222400.v1.1
prunus_persica	Prupe.1G401400_v2.0.a1 Prupe.7G193500_v2.0.a1
pyrus_communis	pycom02g07750 pycom08g03910 pycom08g03920 pycom15g04540 pycom15g04600
rosa_chinensis	RchiOBHm_Chr2g0095771 RchiOBHm_Chr6g0304751
rosa_laevigata	RLG00000010953 RLG00000016591
rosa_multiflora	Rmu_co8416307.1_g000001 Rmu_sc0031036.1_g000001 Rmu_ssc0000139.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146110 Rroxscaffold_7G00163530
rosa_rugosa	Rorug02G0053100 Rorug06G0334200
rosa_samantha	Rh2AG101500 Rh2AG101600 Rh2BG103200 Rh2CG105500 Rh2DG102900 Rh6AG446100 Rh6BG455500 Rh6CG459500 Rh6DG446400
rosa_wichuraiana	Rw2G007710 Rw6G038810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	164, 463
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	2 cut(s)	218, 511
AfiI	CCNNNNNNNGG	3 cut(s)	156, 244, 504
AgsI	TTSAA	4 cut(s)	75, 365, 371, 628
AluBI	AGCT	4 cut(s)	117, 202, 436, 631
AluI	AGCT	4 cut(s)	117, 202, 436, 631
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	703, 822
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	465
ApoI	RAATTY	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	566
AxyI	CCTNAGG	1 cut(s)	297
BbsI	GAAGAC	2 cut(s)	75, 378
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	4 cut(s)	40, 262, 525, 667
BceAI	ACGGC	1 cut(s)	235
BclI	TGATCA	1 cut(s)	655
BcoDI	GTCTC	2 cut(s)	703, 822
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	1 cut(s)	466
BlsI	GCNGC	1 cut(s)	467
BmsI	GCATC	3 cut(s)	341, 581, 741
BpiI	GAAGAC	2 cut(s)	75, 378
BpmI	CTGGAG	1 cut(s)	407
Bpu10I	CCTNAGC	2 cut(s)	231, 453
Bpu14I	TTCGAA	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 244, 504
Bse1I	ACTGG	3 cut(s)	390, 418, 797
Bse21I	CCTNAGG	1 cut(s)	297
BseGI	GGATG	2 cut(s)	146, 517
BseLI	CCNNNNNNNGG	3 cut(s)	156, 244, 504
BseMII	CTCAG	4 cut(s)	222, 273, 288, 444
BseNI	ACTGG	3 cut(s)	390, 418, 797
BseXI	GCAGC	1 cut(s)	477
BsgI	GTGCAG	1 cut(s)	557
BshFI	GGCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	156, 244, 504
BsmAI	GTCTC	2 cut(s)	703, 822
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	222
Bsp119I	TTCGAA	1 cut(s)	566
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	655
BspACI	CCGC	2 cut(s)	164, 463
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	4 cut(s)	223, 274, 289, 445
BspHI	TCATGA	1 cut(s)	97
BspQI	GCTCTTC	1 cut(s)	779
BspT104I	TTCGAA	1 cut(s)	566
BsrI	ACTGG	3 cut(s)	390, 418, 797
BssMI	GATC	1 cut(s)	655
Bst4CI	ACNGT	4 cut(s)	28, 321, 640, 743
Bst6I	CTCTTC	5 cut(s)	137, 487, 680, 779, 834
BstBI	TTCGAA	1 cut(s)	566
BstDEI	CTNAG	4 cut(s)	231, 282, 297, 453
BstENI	CCTNNNNNAGG	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	146, 517
BstKTI	GATC	1 cut(s)	658
BstMAI	GTCTC	2 cut(s)	703, 822
BstMBI	GATC	1 cut(s)	655
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	477
BstV2I	GAAGAC	2 cut(s)	75, 378
BstXI	CCANNNNNNTGG	1 cut(s)	39
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	146, 517
BtsI	GCAGTG	1 cut(s)	712
BtsIMutI	CAGTG	3 cut(s)	521, 712, 748
CciI	TCATGA	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	217, 510
CviAII	CATG	3 cut(s)	98, 472, 535
CviQI	GTAC	2 cut(s)	217, 510
DdeI	CTNAG	4 cut(s)	231, 282, 297, 453
DpnI	GATC	1 cut(s)	657
DpnII	GATC	1 cut(s)	655
DraI	TTTAAA	1 cut(s)	325
Eam1104I	CTCTTC	5 cut(s)	137, 487, 680, 779, 834
EarI	CTCTTC	5 cut(s)	137, 487, 680, 779, 834
Eco81I	CCTNAGG	1 cut(s)	297
EcoNI	CCTNNNNNAGG	1 cut(s)	502
FaeI	CATG	3 cut(s)	101, 475, 538
FalI	AAGNNNNNCTT	2 cut(s)	636, 668
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	3 cut(s)	97, 471, 534
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	1 cut(s)	466
FokI	GGATG	2 cut(s)	133, 504
Fsp4HI	GCNGC	1 cut(s)	466
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	1 cut(s)	466
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	101, 475, 538
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HindIII	AAGCTT	2 cut(s)	200, 629
HinfI	GANTC	4 cut(s)	182, 479, 526, 568
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188I	TCNGA	3 cut(s)	636, 660, 802
Hpy188III	TCNNGA	3 cut(s)	98, 121, 606
Hpy8I	GTNNAC	1 cut(s)	616
Hpy99I	CGWCG	1 cut(s)	697
HpyAV	CCTTC	2 cut(s)	104, 154
HpyCH4III	ACNGT	4 cut(s)	28, 321, 640, 743
HpyCH4V	TGCA	4 cut(s)	19, 574, 594, 717
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	4 cut(s)	231, 282, 297, 453
Hsp92II	CATG	3 cut(s)	101, 475, 538
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	1 cut(s)	655
LguI	GCTCTTC	1 cut(s)	779
LmnI	GCTCC	1 cut(s)	441
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	3 cut(s)	341, 581, 741
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	657
MboI	GATC	1 cut(s)	655
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	89, 360, 365
MlyI	GAGTC	2 cut(s)	191, 473
MmeI	TCCRAC	1 cut(s)	659
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	2 cut(s)	324, 853
MslI	CAYNNNNRTG	2 cut(s)	337, 744
MwoI	GCNNNNNNNGC	1 cut(s)	199
NdeII	GATC	1 cut(s)	655
NlaIII	CATG	3 cut(s)	101, 475, 538
NmeAIII	GCCGAG	1 cut(s)	851
NspV	TTCGAA	1 cut(s)	566
PagI	TCATGA	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	779
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	526, 568
PkrI	GCNGC	1 cut(s)	467
PleI	GAGTC	2 cut(s)	190, 473
PpsI	GAGTC	2 cut(s)	190, 473
RsaI	GTAC	2 cut(s)	218, 511
RsaNI	GTAC	2 cut(s)	217, 510
RseI	CAYNNNNRTG	2 cut(s)	337, 744
SapI	GCTCTTC	1 cut(s)	779
SaqAI	TTAA	2 cut(s)	324, 853
SatI	GCNGC	1 cut(s)	466
Sau3AI	GATC	1 cut(s)	655
SchI	GAGTC	2 cut(s)	191, 473
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	6 cut(s)	83, 119, 204, 232, 438, 633
SfaNI	GCATC	3 cut(s)	341, 581, 741
SfuI	TTCGAA	1 cut(s)	566
SmiMI	CAYNNNNRTG	2 cut(s)	337, 744
Sse9I	AATT	3 cut(s)	89, 360, 365
SsiI	CCGC	2 cut(s)	164, 463
SspMI	CTAG	1 cut(s)	209
TaaI	ACNGT	4 cut(s)	28, 321, 640, 743
TaqI	TCGA	1 cut(s)	566
TasI	AATT	3 cut(s)	89, 360, 365
TfiI	GAWTC	2 cut(s)	526, 568
Tru1I	TTAA	2 cut(s)	324, 853
Tru9I	TTAA	2 cut(s)	324, 853
TscAI	CASTG	3 cut(s)	528, 719, 748
TseI	GCWGC	1 cut(s)	465
TspDTI	ATGAA	7 cut(s)	86, 114, 135, 166, 541, 698, 852
TspRI	CASTG	3 cut(s)	528, 719, 748
XagI	CCTNNNNNAGG	1 cut(s)	502
XapI	RAATTY	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.