Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002931

Physical Location & Seq

Genomic Coordinates Forward (+)

3536423 .. 3537153

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1046800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTTGACTCCTCTGGAACTATGCCCTTGTATAGGGGTACGATCCATCCACTGATTCCCAACATGGCATTCGTGGGATTCATAGAGAGTGTTTCTAACCTGCACACAGCAGAGTTGAGATGCAAATGGTTAGGCAGATTGGTTGACAACGAATTCAAGCTTCCGACTGTCCAAAAAATGCTTGAACAGATAGGCAGAGAGATGGAAGTGATGAAGAACATTTTACAAGAGGCACTGCATTTCAACTTTCAGTATCAACCACAGCGACGACATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

93

Amino Acids

10.77

Weight (kDa)

7.97

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19250 AT5G45180
fragaria_vesca	FvH4_1g09240 FvH4_2g37000
malus_domestica	MD02G1099600.v1.1 MD08G1046700.v1.1 MD08G1046800.v1.1 MD15G1047200.v1.1 MD15G1222400.v1.1
prunus_persica	Prupe.1G401400_v2.0.a1 Prupe.7G193500_v2.0.a1
pyrus_communis	pycom02g07750 pycom08g03910 pycom08g03920 pycom15g04540 pycom15g04600
rosa_chinensis	RchiOBHm_Chr2g0095771 RchiOBHm_Chr6g0304751
rosa_laevigata	RLG00000010953 RLG00000016591
rosa_multiflora	Rmu_co8416307.1_g000001 Rmu_sc0031036.1_g000001 Rmu_ssc0000139.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146110 Rroxscaffold_7G00163530
rosa_rugosa	Rorug02G0053100 Rorug06G0334200
rosa_samantha	Rh2AG101500 Rh2AG101600 Rh2BG103200 Rh2CG105500 Rh2DG102900 Rh6AG446100 Rh6BG455500 Rh6CG459500 Rh6DG446400
rosa_wichuraiana	Rw2G007710 Rw6G038810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	3 cut(s)	157, 185, 244
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
AlwI	GGATC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	152
BccI	CCATC	2 cut(s)	54, 196
BfuAI	ACCTGC	1 cut(s)	108
BmsI	GCATC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	33
BsgI	GTGCAG	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	37
BssMI	GATC	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	169
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	50, 233
BveI	ACCTGC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	1 cut(s)	160
CviKI_1	RGCY	1 cut(s)	160
CviQI	GTAC	1 cut(s)	39
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	152
FaeI	CATG	1 cut(s)	67
FaiI	YATR	4 cut(s)	23, 33, 65, 83
FatI	CATG	1 cut(s)	63
FokI	GGATG	1 cut(s)	33
Hin1II	CATG	1 cut(s)	67
HincII	GTYRAC	2 cut(s)	7, 145
HindII	GTYRAC	2 cut(s)	7, 145
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	3 cut(s)	8, 55, 78
Hpy166II	GTNNAC	2 cut(s)	7, 145
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	1 cut(s)	15
Hpy8I	GTNNAC	2 cut(s)	7, 145
Hpy99I	CGWCG	1 cut(s)	270
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	3 cut(s)	103, 123, 238
Hsp92II	CATG	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	1 cut(s)	113
LweI	GCATC	1 cut(s)	110
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	226
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	2 cut(s)	22, 223
Mva1269I	GAATGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	67
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	55, 78
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	2
SetI	ASST	2 cut(s)	102, 162
SfaNI	GCATC	1 cut(s)	110
SgeI	CNNG	8 cut(s)	27, 40, 76, 85, 112, 169, 194, 239
Sse9I	AATT	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	169
TasI	AATT	1 cut(s)	152
TfiI	GAWTC	2 cut(s)	55, 78
TscAI	CASTG	2 cut(s)	57, 240
TspDTI	ATGAA	2 cut(s)	70, 227
TspRI	CASTG	2 cut(s)	57, 240
XagI	CCTNNNNNAGG	1 cut(s)	31
XapI	RAATTY	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.