Rroxscaffold_7G00163530

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002931
Physical Location & Seq
Forward (+)
5758859 .. 5759781
923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163530.1

Sequence Viewer

Length: 504 bp
ATGGTGGAATTGAATTTGAAGACAACACCAGACTGGAGGCTGATGTTGTTCTTCTTGCTACTGGTTATGAGGGAAAGAAGAAGCTCCCAGTCTGTATTGCCTGAGCCTTTCCGCAGCCTCATGCTTGACTCTTCTGGCACTATGCCCTTATACAGGGGTACAGTCCATCCACTGATTCCCAACATGGCATTTGTGGGTTTCATAGAGAGCGTTTCGAATCTGCACACAGCAGAGTTGAGATGCAAATGGCTATCAAGAGTTGTTGACAAGGAGTTCAAGCTTCCGACTGTGAAAGAAATGCTTGATCAGATAAGCAGAGAGATGGAAGTGATGAAGAGGACGACGAGATTTTACAAGAGACACTGCATTTCCACTTTCAGCATCAACCACAGTGATGAGATTTGTGAAGAAATGGGATGGAAGTCTTGGAGGAAGAGCAACTGGTTTTCAGAGGCTTTTAGCCCTTATAACAGCCGAGACTATAATGAAGAGAAAGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00982 ko01120 map00982 map01120
Pfam Domains
Protein Families
FMO-like

Protein Analysis

167

Amino Acids

19.93

Weight (kDa)

7.74

Isoelectric Point (pI)

53.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 60 - 141 3e-07 Flavin-binding monooxygenase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AciI CCGC 1 cut(s) 112
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 3 cut(s) 13, 19, 277
AluBI AGCT 2 cut(s) 84, 280
AluI AGCT 2 cut(s) 84, 280
Alw26I GTCTC 2 cut(s) 352, 471
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 13
AsuII TTCGAA 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 126
BccI CCATC 3 cut(s) 174, 316, 411
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 352, 471
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 82
BmsI GCATC 2 cut(s) 230, 390
BmuI ACTGGG 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse1I ACTGG 4 cut(s) 38, 66, 88, 446
BseGI GGATG 2 cut(s) 166, 422
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 4 cut(s) 38, 66, 88, 446
BseXI GCAGC 1 cut(s) 126
BsgI GTGCAG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 153
BsmAI GTCTC 2 cut(s) 352, 471
Bsp119I TTCGAA 1 cut(s) 215
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 94
BspQI GCTCTTC 1 cut(s) 428
BspT104I TTCGAA 1 cut(s) 215
BsrI ACTGG 4 cut(s) 38, 66, 88, 446
BssMI GATC 1 cut(s) 304
Bst4CI ACNGT 3 cut(s) 163, 289, 392
Bst6I CTCTTC 4 cut(s) 136, 329, 428, 483
BstBI TTCGAA 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 102
BstENI CCTNNNNNAGG 1 cut(s) 151
BstF5I GGATG 2 cut(s) 166, 422
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 2 cut(s) 352, 471
BstMBI GATC 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 26
BtsCI GGATG 2 cut(s) 166, 422
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 3 cut(s) 170, 361, 397
Csp6I GTAC 1 cut(s) 159
CviAII CATG 2 cut(s) 121, 184
CviJI RGCY 9 cut(s) 40, 84, 106, 117, 250, 280, 455, 462, 474
CviKI_1 RGCY 9 cut(s) 40, 84, 106, 117, 250, 280, 455, 462, 474
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eam1104I CTCTTC 4 cut(s) 136, 329, 428, 483
EarI CTCTTC 4 cut(s) 136, 329, 428, 483
EcoNI CCTNNNNNAGG 1 cut(s) 151
FaeI CATG 2 cut(s) 124, 187
FaiI YATR 8 cut(s) 68, 122, 143, 151, 185, 203, 468, 483
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 2 cut(s) 120, 183
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 2 cut(s) 153, 429
Fsp4HI GCNGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 115
GsuI CTGGAG 1 cut(s) 55
Hin1II CATG 2 cut(s) 124, 187
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 3 cut(s) 128, 175, 217
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 3 cut(s) 285, 309, 451
Hpy188III TCNNGA 1 cut(s) 255
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 1 cut(s) 346
HpyCH4III ACNGT 3 cut(s) 163, 289, 392
HpyCH4V TGCA 3 cut(s) 223, 243, 366
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 2 cut(s) 124, 187
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 1 cut(s) 304
LguI GCTCTTC 1 cut(s) 428
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 8 cut(s) 19, 42, 47, 101, 114, 120, 139, 427
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 2 cut(s) 230, 390
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 8 cut(s) 31, 43, 90, 123, 346, 419, 445, 500
MluCI AATT 2 cut(s) 8, 13
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 7 cut(s) 30, 63, 128, 330, 423, 445, 490
MseI TTAA 1 cut(s) 502
MslI CAYNNNNRTG 1 cut(s) 393
NdeII GATC 1 cut(s) 304
NlaIII CATG 2 cut(s) 124, 187
NmeAIII GCCGAG 1 cut(s) 500
NspV TTCGAA 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 175, 217
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PsiI TTATAA 1 cut(s) 468
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 393
SapI GCTCTTC 1 cut(s) 428
SaqAI TTAA 1 cut(s) 502
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 304
SchI GAGTC 1 cut(s) 122
SetI ASST 2 cut(s) 86, 282
SfaNI GCATC 2 cut(s) 230, 390
SfuI TTCGAA 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 2 cut(s) 8, 13
SsiI CCGC 1 cut(s) 112
TaaI ACNGT 3 cut(s) 163, 289, 392
TaqI TCGA 1 cut(s) 215
TasI AATT 2 cut(s) 8, 13
TfiI GAWTC 2 cut(s) 175, 217
Tru1I TTAA 1 cut(s) 502
Tru9I TTAA 1 cut(s) 502
TscAI CASTG 3 cut(s) 177, 368, 397
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 3 cut(s) 190, 347, 501
TspRI CASTG 3 cut(s) 177, 368, 397
XagI CCTNNNNNAGG 1 cut(s) 151
XapI RAATTY 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.