Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002931

Physical Location & Seq

Genomic Coordinates Reverse (-)

2740499 .. 2742615

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g04600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCTGCTGCCAACACCCACCACCTTCACTCAGTATCAAAAATTGGGATTATAGGGGCTGGTATTAGCGGAATCGCCGCCGCTAAACAGCTTTCAGGTCACAGTCCGGTGGTCTTTGAGGCCACTGATTCCATCGGGGGTGTTTGGAAACATTGTTCTTACAATTCTACCAAACTCCAATCCCCTCGTTGCAATTTCGAGTTTTCTGACTACCCTTGGGCTGAGAGAGACAATTCATCTTTCCCTTCTCATGTAGAGGTTTTGGAGTACTTGCATGGCTATGCCACACACTTTGACCTATTGAAATATGTCAAGTTTGAGTCCAAAGTGGTGGAAATACGTTATGTTGGTGGTATTGATGACCATCAAACCACCACCCAATTTCTCATGAATTCGATCTCCGGGGAGTATGGTAGCCTTTTGAGCGGCCATCCTGTTTGGGAGGTTGCTGTTCAGATGTCCAACAATCCAAACATCATTCAGTGGTATGCATTCGAGTTCCTCGTAGTTTGCATTGGAAAATATGGAGACATACCAAGAATGCCGAGTTTCCCGCGCAACAAAGGTCAAGAAGTATTTCAAGGCAAAGTCTTGCACTCCCTGGATTACTCTAAGCTTGACCAACGAGCAGCTCGTGAGCTCCTCAAAGGCAAGAAGGTTGCAGTTATTGGCTACAAGAAGTCAGCTATTGACGTGGCAATTGAGTGCGCAGAGGCAAACCAAGGACCCGATGGGCAGGCATGCACAATGGTGATAAGGACTCCACATTGGACAGTTCCATCTTACTGGATTTGGGGGCTTCCATTTTTCCTGTTTTTTTCGACAAGGTCTTCTCAATTCCTCCACGAAAGGCCAAACCAGAGCTTATTCCGAGCCTTGTTTTGCCTTCTTTCATCGCCTATGAGGATGATGATTTCCAAGTTCATAGAATCGTACTTAGAGTGGAAGCTTCCCCTTGTGAAGTATGGACTAAAGCCTGATCGATCCATTTTTGGAGGACTATGCTTCATGCCAGATGGCTATTTTACCGGAAAATTTCTTCGCCGAGGCGGACAAGGGCAAAATATTGTTCAAAAGGTCATCAAAGTGGTGGTTTTGGAGCGGAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

371

Amino Acids

41.79

Weight (kDa)

9.09

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19250 AT5G45180
fragaria_vesca	FvH4_1g09240 FvH4_2g37000
malus_domestica	MD02G1099600.v1.1 MD08G1046700.v1.1 MD08G1046800.v1.1 MD15G1047200.v1.1 MD15G1222400.v1.1
prunus_persica	Prupe.1G401400_v2.0.a1 Prupe.7G193500_v2.0.a1
pyrus_communis	pycom02g07750 pycom08g03910 pycom08g03920 pycom15g04540 pycom15g04600
rosa_chinensis	RchiOBHm_Chr2g0095771 RchiOBHm_Chr6g0304751
rosa_laevigata	RLG00000010953 RLG00000016591
rosa_multiflora	Rmu_co8416307.1_g000001 Rmu_sc0031036.1_g000001 Rmu_ssc0000139.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146110 Rroxscaffold_7G00163530
rosa_rugosa	Rorug02G0053100 Rorug06G0334200
rosa_samantha	Rh2AG101500 Rh2AG101600 Rh2BG103200 Rh2CG105500 Rh2DG102900 Rh6AG446100 Rh6BG455500 Rh6CG459500 Rh6DG446400
rosa_wichuraiana	Rw2G007710 Rw6G038810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	709
AccBSI	CCGCTC	2 cut(s)	426, 1102
AccII	CGCG	1 cut(s)	556
AciI	CCGC	7 cut(s)	69, 78, 81, 426, 554, 1050, 1102
AclWI	GGATC	1 cut(s)	978
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	2 cut(s)	391, 1034
AfaI	GTAC	2 cut(s)	269, 935
AgsI	TTSAA	3 cut(s)	304, 581, 1073
AjiI	CACGTC	1 cut(s)	694
AjnI	CCWGG	1 cut(s)	600
AleI	CACNNNNGTG	1 cut(s)	749
AloI	GAACNNNNNNTCC	2 cut(s)	139, 171
AluBI	AGCT	7 cut(s)	91, 616, 632, 640, 686, 864, 949
AluI	AGCT	7 cut(s)	91, 616, 632, 640, 686, 864, 949
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	2 cut(s)	222, 522
AlwI	GGATC	1 cut(s)	978
AoxI	GGCC	3 cut(s)	120, 427, 851
ApeKI	GCWGC	3 cut(s)	5, 8, 629
ApoI	RAATTY	2 cut(s)	391, 1034
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	2 cut(s)	558, 710
AspS9I	GGNCC	1 cut(s)	725
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	763
AvaII	GGWCC	1 cut(s)	725
BanII	GRGCYC	1 cut(s)	642
BauI	CACGAG	1 cut(s)	633
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	1 cut(s)	641
BccI	CCATC	6 cut(s)	140, 372, 438, 725, 787, 1010
BciT130I	CCWGG	1 cut(s)	602
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	2 cut(s)	222, 522
BisI	GCNGC	6 cut(s)	6, 9, 78, 81, 427, 630
BlsI	GCNGC	6 cut(s)	7, 10, 79, 82, 428, 631
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	2 cut(s)	403, 602
Bme18I	GGWCC	1 cut(s)	725
BmgBI	CACGTC	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	725
BmiI	GGNNCC	1 cut(s)	727
BmrFI	CCNGG	2 cut(s)	403, 602
BpiI	GAAGAC	1 cut(s)	822
BpuMI	CCSGG	1 cut(s)	403
Bsa29I	ATCGAT	1 cut(s)	982
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	5 cut(s)	215, 402, 600, 721, 1045
BsaWI	WCCGGW	2 cut(s)	106, 1028
Bse1I	ACTGG	1 cut(s)	791
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	602
BseCI	ATCGAT	1 cut(s)	982
BseDI	CCNNGG	5 cut(s)	215, 402, 600, 721, 1045
BseGI	GGATG	2 cut(s)	430, 912
BseJI	GATNNNNATC	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	45, 213
BseNI	ACTGG	1 cut(s)	791
BseRI	GAGGAG	1 cut(s)	632
BseXI	GCAGC	1 cut(s)	641
Bsh1236I	CGCG	1 cut(s)	556
BshFI	GGCC	3 cut(s)	122, 429, 853
BshVI	ATCGAT	1 cut(s)	982
BsiHKAI	GWGCWC	1 cut(s)	642
BsiSI	CCGG	3 cut(s)	107, 402, 1029
BsmAI	GTCTC	2 cut(s)	222, 522
BsmI	GAATGC	2 cut(s)	491, 546
BsnI	GGCC	3 cut(s)	122, 429, 853
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp143I	GATC	3 cut(s)	396, 979, 983
BspACI	CCGC	7 cut(s)	69, 78, 81, 426, 554, 1050, 1102
BspANI	GGCC	3 cut(s)	122, 429, 853
BspCNI	CTCAG	2 cut(s)	44, 214
BspDI	ATCGAT	1 cut(s)	982
BspFNI	CGCG	1 cut(s)	556
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	727
BspPI	GGATC	1 cut(s)	978
BsrBI	CCGCTC	2 cut(s)	426, 1102
BsrI	ACTGG	1 cut(s)	791
BssECI	CCNNGG	5 cut(s)	215, 402, 600, 721, 1045
BssMI	GATC	3 cut(s)	396, 979, 983
BssSI	CACGAG	1 cut(s)	633
BssT1I	CCWWGG	2 cut(s)	215, 721
Bst2BI	CACGAG	1 cut(s)	633
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	2 cut(s)	104, 775
BstC8I	GCNNGC	2 cut(s)	738, 742
BstDEI	CTNAG	4 cut(s)	31, 222, 612, 937
BstF5I	GGATG	2 cut(s)	430, 912
BstFNI	CGCG	1 cut(s)	556
BstHHI	GCGC	2 cut(s)	558, 710
BstKTI	GATC	3 cut(s)	399, 982, 986
BstMAI	GTCTC	2 cut(s)	222, 522
BstMBI	GATC	3 cut(s)	396, 979, 983
BstMWI	GCNNNNNNNGC	1 cut(s)	423
BstNI	CCWGG	1 cut(s)	602
BstNSI	RCATGY	1 cut(s)	744
BstSCI	CCNGG	2 cut(s)	401, 600
BstUI	CGCG	1 cut(s)	556
BstV1I	GCAGC	1 cut(s)	641
BstV2I	GAAGAC	1 cut(s)	822
BstXI	CCANNNNNNTGG	2 cut(s)	331, 786
Bsu15I	ATCGAT	1 cut(s)	982
BsuRI	GGCC	3 cut(s)	122, 429, 853
BsuTUI	ATCGAT	1 cut(s)	982
BtgZI	GCGATG	1 cut(s)	879
BtrI	CACGTC	1 cut(s)	694
BtsCI	GGATG	2 cut(s)	430, 912
BtsIMutI	CAGTG	2 cut(s)	123, 488
Cac8I	GCNNGC	2 cut(s)	738, 742
CciI	TCATGA	1 cut(s)	387
CfoI	GCGC	2 cut(s)	558, 710
Cfr13I	GGNCC	1 cut(s)	725
ClaI	ATCGAT	1 cut(s)	982
Csp6I	GTAC	2 cut(s)	268, 934
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	5 cut(s)	251, 275, 388, 741, 1009
CviQI	GTAC	2 cut(s)	268, 934
DdeI	CTNAG	4 cut(s)	31, 222, 612, 937
DpnI	GATC	3 cut(s)	398, 981, 985
DpnII	GATC	3 cut(s)	396, 979, 983
EaeI	YGGCCR	1 cut(s)	427
EciI	GGCGGA	1 cut(s)	1065
Ecl136II	GAGCTC	1 cut(s)	640
Eco130I	CCWWGG	2 cut(s)	215, 721
Eco24I	GRGCYC	1 cut(s)	642
Eco47I	GGWCC	1 cut(s)	725
Eco53kI	GAGCTC	1 cut(s)	640
EcoICRI	GAGCTC	1 cut(s)	640
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	600
EcoT14I	CCWWGG	2 cut(s)	215, 721
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	642
ErhI	CCWWGG	2 cut(s)	215, 721
FaeI	CATG	5 cut(s)	254, 278, 391, 744, 1012
FatI	CATG	5 cut(s)	250, 274, 387, 740, 1008
FauI	CCCGC	1 cut(s)	561
Fnu4HI	GCNGC	6 cut(s)	6, 9, 78, 81, 427, 630
FokI	GGATG	2 cut(s)	417, 919
FriOI	GRGCYC	1 cut(s)	642
Fsp4HI	GCNGC	6 cut(s)	6, 9, 78, 81, 427, 630
FspI	TGCGCA	1 cut(s)	709
GlaI	GCGC	2 cut(s)	557, 709
GluI	GCNGC	6 cut(s)	6, 9, 78, 81, 427, 630
HaeIII	GGCC	3 cut(s)	122, 429, 853
HapII	CCGG	3 cut(s)	107, 402, 1029
HhaI	GCGC	2 cut(s)	558, 710
Hin1II	CATG	5 cut(s)	254, 278, 391, 744, 1012
Hin6I	GCGC	2 cut(s)	556, 708
HinP1I	GCGC	2 cut(s)	556, 708
HindIII	AAGCTT	2 cut(s)	614, 947
HinfI	GANTC	5 cut(s)	72, 128, 320, 760, 929
HpaII	CCGG	3 cut(s)	107, 402, 1029
HphI	GGTGA	1 cut(s)	763
Hpy188I	TCNGA	3 cut(s)	208, 456, 872
Hpy188III	TCNNGA	3 cut(s)	388, 569, 635
HpyAV	CCTTC	4 cut(s)	35, 255, 649, 896
HpyCH4III	ACNGT	2 cut(s)	104, 775
HpyCH4IV	ACGT	2 cut(s)	340, 693
HpyCH4V	TGCA	7 cut(s)	192, 274, 491, 513, 595, 662, 744
HpyF10VI	GCNNNNNNNGC	1 cut(s)	423
HpyF3I	CTNAG	4 cut(s)	31, 222, 612, 937
HpySE526I	ACGT	2 cut(s)	340, 693
Hsp92II	CATG	5 cut(s)	254, 278, 391, 744, 1012
HspAI	GCGC	2 cut(s)	556, 708
Kzo9I	GATC	3 cut(s)	396, 979, 983
LmnI	GCTCC	2 cut(s)	645, 1099
Lsp1109I	GCAGC	1 cut(s)	641
MaeII	ACGT	2 cut(s)	340, 693
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	3 cut(s)	398, 981, 985
MbiI	CCGCTC	2 cut(s)	426, 1102
MboI	GATC	3 cut(s)	396, 979, 983
MboII	GAAGA	2 cut(s)	822, 1031
MfeI	CAATTG	1 cut(s)	699
MhlI	GDGCHC	1 cut(s)	642
MlyI	GAGTC	2 cut(s)	329, 754
MmeI	TCCRAC	1 cut(s)	486
Mph1103I	ATGCAT	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	576
MslI	CAYNNNNRTG	3 cut(s)	279, 749, 1085
MspI	CCGG	3 cut(s)	107, 402, 1029
MspR9I	CCNGG	2 cut(s)	403, 602
MunI	CAATTG	1 cut(s)	699
Mva1269I	GAATGC	2 cut(s)	491, 546
MvaI	CCWGG	1 cut(s)	602
MvnI	CGCG	1 cut(s)	556
MwoI	GCNNNNNNNGC	1 cut(s)	423
NciI	CCSGG	1 cut(s)	403
NdeII	GATC	3 cut(s)	396, 979, 983
NlaIII	CATG	5 cut(s)	254, 278, 391, 744, 1012
NlaIV	GGNNCC	1 cut(s)	727
NmeAIII	GCCGAG	2 cut(s)	570, 1070
NmuCI	GTSAC	1 cut(s)	98
NsbI	TGCGCA	1 cut(s)	709
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	1 cut(s)	744
OliI	CACNNNNGTG	1 cut(s)	749
PaeI	GCATGC	1 cut(s)	744
PagI	TCATGA	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	2 cut(s)	501, 631
PctI	GAATGC	2 cut(s)	491, 546
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	3 cut(s)	72, 128, 929
PflFI	GACNNNGTC	1 cut(s)	826
PkrI	GCNGC	6 cut(s)	7, 10, 79, 82, 428, 631
PleI	GAGTC	2 cut(s)	328, 754
PpsI	GAGTC	2 cut(s)	328, 754
PpuMI	RGGWCCY	1 cut(s)	725
Psp124BI	GAGCTC	1 cut(s)	642
Psp5II	RGGWCCY	1 cut(s)	725
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	1 cut(s)	727
PspPI	GGNCC	1 cut(s)	725
PspPPI	RGGWCCY	1 cut(s)	725
PsyI	GACNNNGTC	1 cut(s)	826
RsaI	GTAC	2 cut(s)	269, 935
RsaNI	GTAC	2 cut(s)	268, 934
RseI	CAYNNNNRTG	3 cut(s)	279, 749, 1085
SacI	GAGCTC	1 cut(s)	642
SatI	GCNGC	6 cut(s)	6, 9, 78, 81, 427, 630
Sau3AI	GATC	3 cut(s)	396, 979, 983
Sau96I	GGNCC	1 cut(s)	725
ScaI	AGTACT	1 cut(s)	269
SchI	GAGTC	2 cut(s)	329, 754
ScrFI	CCNGG	2 cut(s)	403, 602
SduI	GDGCHC	1 cut(s)	642
SinI	GGWCC	1 cut(s)	725
SmiMI	CAYNNNNRTG	3 cut(s)	279, 749, 1085
SphI	GCATGC	1 cut(s)	744
SsiI	CCGC	7 cut(s)	69, 78, 81, 426, 554, 1050, 1102
SspI	AATATT	1 cut(s)	1066
SstI	GAGCTC	1 cut(s)	642
StyD4I	CCNGG	2 cut(s)	401, 600
StyI	CCWWGG	2 cut(s)	215, 721
TaaI	ACNGT	2 cut(s)	104, 775
TaiI	ACGT	2 cut(s)	343, 696
TaqI	TCGA	5 cut(s)	198, 395, 495, 821, 982
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	3 cut(s)	80, 83, 429
TfiI	GAWTC	3 cut(s)	72, 128, 929
TscAI	CASTG	2 cut(s)	130, 488
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	3 cut(s)	5, 8, 629
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	5 cut(s)	225, 404, 882, 913, 997
TspRI	CASTG	2 cut(s)	130, 488
Tth111I	GACNNNGTC	1 cut(s)	826
VpaK11BI	GGWCC	1 cut(s)	725
XapI	RAATTY	2 cut(s)	391, 1034
XceI	RCATGY	1 cut(s)	744
XcmI	CCANNNNNNNNNTGG	1 cut(s)	728
XmnI	GAANNNNTTC	1 cut(s)	576
ZrmI	AGTACT	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.