Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002931

Physical Location & Seq

Genomic Coordinates Forward (+)

3534405 .. 3535525

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1046700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCTGCTGCCAACACCCACCACCTTCATTCAGTATCAAAAGTAGGGATTATAGGGGCAGGTATTAGTGGAATCGCGGCCGCTAAACAGCTTTCAGGTCACAGTCCGGTGGTCTTTGAGGCCACTAATTCCATTGGGGGTGTTTGGAGACACTGTTCTTACAATTCTACCAAACTCCAAACCCCTCGTTGCGATTTCGAGTTTTCTAACTACCCTTGGGCTGAGAGAGACAATTCATCTTTCCCTTCTCATGTAGAGGTATTGGAGTACTTGCATGGCTATGCCACACACTTTGACCTATTGAAATATGTCAAGTTTGAGTCCAAAGTGGTTGAAGTACGTTATGTTGGTGGTATTGGTCATCAAACCACCACCCAATTTCCCGGGAATTCGAACTCCGGGGAGTATGGGAACCTTTTGAATGGTGATCCTGTTTGGGAGGTCGCTGTTCAGATGTGCAGCAATCCAAACACCATTCAGTGGTATGCATTCGAGTTCATAGTAGTTTGCATTGGAAAATATGGAGACATACCAAGAATGCCAAATTTCCCGCGCAACAAAGGTCAAGAAGTATTTCAGGGCAAAGTCTTGCACTCCATGGATTACTCTAAGCTTGACCAACAAGCAGCTCGTGAACTCCTCAAAGGCAAGAAGGTTGCAGTTATTGGCTACAAGAAGTCAGCTATTGATATGGCAGTTGAGTGCGCAGAGGCAAACCAAGGTATATACAAAATATTAAAATCTTATCCTACATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

253

Amino Acids

27.92

Weight (kDa)

8.19

Isoelectric Point (pI)

16.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	14 - 239	1.4e-21	Flavin-binding monooxygenase-like
NAD_binding_8	PF13450	17 - 56	8.9e-07	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19250 AT5G45180
fragaria_vesca	FvH4_1g09240 FvH4_2g37000
malus_domestica	MD02G1099600.v1.1 MD08G1046700.v1.1 MD08G1046800.v1.1 MD15G1047200.v1.1 MD15G1222400.v1.1
prunus_persica	Prupe.1G401400_v2.0.a1 Prupe.7G193500_v2.0.a1
pyrus_communis	pycom02g07750 pycom08g03910 pycom08g03920 pycom15g04540 pycom15g04600
rosa_chinensis	RchiOBHm_Chr2g0095771 RchiOBHm_Chr6g0304751
rosa_laevigata	RLG00000010953 RLG00000016591
rosa_multiflora	Rmu_co8416307.1_g000001 Rmu_sc0031036.1_g000001 Rmu_ssc0000139.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146110 Rroxscaffold_7G00163530
rosa_rugosa	Rorug02G0053100 Rorug06G0334200
rosa_samantha	Rh2AG101500 Rh2AG101600 Rh2BG103200 Rh2CG105500 Rh2DG102900 Rh6AG446100 Rh6BG455500 Rh6CG459500 Rh6DG446400
rosa_wichuraiana	Rw2G007710 Rw6G038810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	480
AccII	CGCG	2 cut(s)	77, 553
AciI	CCGC	3 cut(s)	77, 81, 551
AclWI	GGATC	1 cut(s)	422
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	388, 544
AfaI	GTAC	2 cut(s)	269, 339
AfiI	CCNNNNNNNGG	1 cut(s)	480
AgsI	TTSAA	3 cut(s)	304, 335, 421
AloI	GAACNNNNNNTCC	2 cut(s)	139, 171
AluBI	AGCT	4 cut(s)	91, 613, 629, 683
AluI	AGCT	4 cut(s)	91, 613, 629, 683
Alw26I	GTCTC	3 cut(s)	142, 222, 519
AlwI	GGATC	1 cut(s)	422
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	2 cut(s)	78, 120
ApeKI	GCWGC	4 cut(s)	5, 8, 459, 626
ApoI	RAATTY	2 cut(s)	388, 544
Asp700I	GAANNNNTTC	1 cut(s)	573
AspLEI	GCGC	2 cut(s)	555, 707
AsuC2I	CCSGG	3 cut(s)	384, 385, 400
AsuHPI	GGTGA	1 cut(s)	437
AsuII	TTCGAA	1 cut(s)	392
AvaI	CYCGRG	1 cut(s)	383
BauI	CACGAG	1 cut(s)	630
BbvI	GCAGC	2 cut(s)	471, 638
BcnI	CCSGG	3 cut(s)	384, 385, 400
BcoDI	GTCTC	3 cut(s)	142, 222, 519
BfuAI	ACCTGC	1 cut(s)	50
BisI	GCNGC	6 cut(s)	6, 9, 78, 81, 460, 627
BlsI	GCNGC	6 cut(s)	7, 10, 79, 82, 461, 628
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	3 cut(s)	384, 385, 400
BmeT110I	CYCGRG	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	3 cut(s)	384, 385, 400
Bpu14I	TTCGAA	1 cut(s)	392
BpuMI	CCSGG	3 cut(s)	384, 385, 400
BsaJI	CCNNGG	5 cut(s)	215, 383, 399, 597, 718
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
BseDI	CCNNGG	5 cut(s)	215, 383, 399, 597, 718
BseGI	GGATG	1 cut(s)	752
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	629
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	471, 638
BsgI	GTGCAG	1 cut(s)	478
Bsh1236I	CGCG	2 cut(s)	77, 553
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	80, 122
BsiEI	CGRYCG	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	3 cut(s)	107, 384, 399
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	3 cut(s)	142, 222, 519
BsmI	GAATGC	2 cut(s)	488, 543
BsnI	GGCC	2 cut(s)	80, 122
BsoBI	CYCGRG	1 cut(s)	383
Bsp119I	TTCGAA	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	427
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	3 cut(s)	77, 81, 551
BspANI	GGCC	2 cut(s)	80, 122
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	2 cut(s)	77, 553
BspLI	GGNNCC	1 cut(s)	413
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	422
BspT104I	TTCGAA	1 cut(s)	392
BssECI	CCNNGG	5 cut(s)	215, 383, 399, 597, 718
BssMI	GATC	1 cut(s)	427
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	3 cut(s)	215, 597, 718
Bst2BI	CACGAG	1 cut(s)	630
Bst4CI	ACNGT	2 cut(s)	104, 155
BstBI	TTCGAA	1 cut(s)	392
BstDEI	CTNAG	2 cut(s)	222, 609
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	1 cut(s)	752
BstFNI	CGCG	2 cut(s)	77, 553
BstHHI	GCGC	2 cut(s)	555, 707
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	3 cut(s)	142, 222, 519
BstMBI	GATC	1 cut(s)	427
BstMCI	CGRYCG	1 cut(s)	81
BstSCI	CCNGG	3 cut(s)	382, 383, 398
BstUI	CGCG	2 cut(s)	77, 553
BstV1I	GCAGC	2 cut(s)	471, 638
BstZI	CGGCCG	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	80, 122
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	752
BtsIMutI	CAGTG	2 cut(s)	151, 485
BveI	ACCTGC	1 cut(s)	50
CciNI	GCGGCCGC	1 cut(s)	78
CfoI	GCGC	2 cut(s)	555, 707
Cfr9I	CCCGGG	1 cut(s)	383
Csp6I	GTAC	2 cut(s)	268, 338
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	3 cut(s)	251, 275, 598
CviQI	GTAC	2 cut(s)	268, 338
DdeI	CTNAG	2 cut(s)	222, 609
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco130I	CCWWGG	3 cut(s)	215, 597, 718
Eco52I	CGGCCG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	388
EcoT14I	CCWWGG	3 cut(s)	215, 597, 718
EcoT22I	ATGCAT	1 cut(s)	490
ErhI	CCWWGG	3 cut(s)	215, 597, 718
FaeI	CATG	3 cut(s)	254, 278, 601
FatI	CATG	3 cut(s)	250, 274, 597
FauI	CCCGC	1 cut(s)	558
Fnu4HI	GCNGC	6 cut(s)	6, 9, 78, 81, 460, 627
FokI	GGATG	1 cut(s)	739
Fsp4HI	GCNGC	6 cut(s)	6, 9, 78, 81, 460, 627
FspI	TGCGCA	1 cut(s)	706
GlaI	GCGC	2 cut(s)	554, 706
GluI	GCNGC	6 cut(s)	6, 9, 78, 81, 460, 627
HaeIII	GGCC	2 cut(s)	80, 122
HapII	CCGG	3 cut(s)	107, 384, 399
HhaI	GCGC	2 cut(s)	555, 707
Hin1II	CATG	3 cut(s)	254, 278, 601
Hin6I	GCGC	2 cut(s)	553, 705
HinP1I	GCGC	2 cut(s)	553, 705
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	2 cut(s)	72, 320
HpaII	CCGG	3 cut(s)	107, 384, 399
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	635
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	2 cut(s)	566, 632
Hpy8I	GTNNAC	1 cut(s)	635
HpyAV	CCTTC	3 cut(s)	35, 255, 646
HpyCH4III	ACNGT	2 cut(s)	104, 155
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	6 cut(s)	274, 459, 488, 510, 592, 659
HpyF3I	CTNAG	2 cut(s)	222, 609
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	3 cut(s)	254, 278, 601
HspAI	GCGC	2 cut(s)	553, 705
Kzo9I	GATC	1 cut(s)	427
LpnPI	CCDG	7 cut(s)	45, 81, 120, 397, 412, 444, 563
Lsp1109I	GCAGC	2 cut(s)	471, 638
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MluCI	AATT	6 cut(s)	127, 163, 232, 377, 388, 544
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	6 cut(s)	112, 195, 250, 433, 650, 703
Mph1103I	ATGCAT	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	1 cut(s)	737
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	3 cut(s)	107, 384, 399
MspR9I	CCNGG	3 cut(s)	384, 385, 400
Mva1269I	GAATGC	2 cut(s)	488, 543
MvnI	CGCG	2 cut(s)	77, 553
NciI	CCSGG	3 cut(s)	384, 385, 400
NcoI	CCATGG	1 cut(s)	597
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	3 cut(s)	254, 278, 601
NlaIV	GGNNCC	1 cut(s)	413
NmuCI	GTSAC	1 cut(s)	98
NotI	GCGGCCGC	1 cut(s)	78
NsbI	TGCGCA	1 cut(s)	706
NsiI	ATGCAT	1 cut(s)	490
NspV	TTCGAA	1 cut(s)	392
PctI	GAATGC	2 cut(s)	488, 543
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	480
PkrI	GCNGC	6 cut(s)	7, 10, 79, 82, 461, 628
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	413
RsaI	GTAC	2 cut(s)	269, 339
RsaNI	GTAC	2 cut(s)	268, 338
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	737
SatI	GCNGC	6 cut(s)	6, 9, 78, 81, 460, 627
Sau3AI	GATC	1 cut(s)	427
ScaI	AGTACT	1 cut(s)	269
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	3 cut(s)	384, 385, 400
SfuI	TTCGAA	1 cut(s)	392
SmaI	CCCGGG	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	6 cut(s)	127, 163, 232, 377, 388, 544
SsiI	CCGC	3 cut(s)	77, 81, 551
SspI	AATATT	1 cut(s)	735
StyD4I	CCNGG	3 cut(s)	382, 383, 398
StyI	CCWWGG	3 cut(s)	215, 597, 718
TaaI	ACNGT	2 cut(s)	104, 155
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	3 cut(s)	198, 392, 492
TasI	AATT	6 cut(s)	127, 163, 232, 377, 388, 544
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	2 cut(s)	80, 83
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	737
Tru9I	TTAA	1 cut(s)	737
TscAI	CASTG	2 cut(s)	158, 485
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	4 cut(s)	5, 8, 459, 626
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	17, 225, 487
TspMI	CCCGGG	1 cut(s)	383
TspRI	CASTG	2 cut(s)	158, 485
Van91I	CCANNNNNTGG	1 cut(s)	480
XapI	RAATTY	2 cut(s)	388, 544
XmaI	CCCGGG	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	573
ZrmI	AGTACT	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.