Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031036.1

Orthogroup ID

OG0002931

Physical Location & Seq

Genomic Coordinates Forward (+)

779 .. 1224

Gene Structure 446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031036.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 446 bp

atggctgcgcaacacctgaaccaaacccaccttcactcagtctccaaaataggcatcataggagctggtattagtggaatcgcagccgctaaacagctttcgggtcacagtccagtggtctttgaggccactgactcgatcgggggagtttggaaacactgctcttacaattccaccaaactccaaacccctcgttgtgactttgagttctccgactacccttggtctgagagagacaatgcaaacttcccttctcatgttgaggtcttggattacttgcatggctatgccacacactttgacctcttgaaacttgtcaagttcggttcaagggttgtggaaatacgctatgtaggtgatgatagtaccagtacccaatcatctgaaaattcgaaatccggggagtatgggaatcttttggccggccacccagtttgggaggtcgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

149

Amino Acids

16.31

Weight (kDa)

5.94

Isoelectric Point (pI)

26.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19250 AT5G45180
fragaria_vesca	FvH4_1g09240 FvH4_2g37000
malus_domestica	MD02G1099600.v1.1 MD08G1046700.v1.1 MD08G1046800.v1.1 MD15G1047200.v1.1 MD15G1222400.v1.1
prunus_persica	Prupe.1G401400_v2.0.a1 Prupe.7G193500_v2.0.a1
pyrus_communis	pycom02g07750 pycom08g03910 pycom08g03920 pycom15g04540 pycom15g04600
rosa_chinensis	RchiOBHm_Chr2g0095771 RchiOBHm_Chr6g0304751
rosa_laevigata	RLG00000010953 RLG00000016591
rosa_multiflora	Rmu_co8416307.1_g000001 Rmu_sc0031036.1_g000001 Rmu_ssc0000139.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146110 Rroxscaffold_7G00163530
rosa_rugosa	Rorug02G0053100 Rorug06G0334200
rosa_samantha	Rh2AG101500 Rh2AG101600 Rh2BG103200 Rh2CG105500 Rh2DG102900 Rh6AG446100 Rh6BG455500 Rh6CG459500 Rh6DG446400
rosa_wichuraiana	Rw2G007710 Rw6G038810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	9
AciI	CCGC	1 cut(s)	87
AcoI	YGGCCR	2 cut(s)	420, 424
AcsI	RAATTY	1 cut(s)	388
AfaI	GTAC	2 cut(s)	367, 373
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	310, 330
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AluBI	AGCT	2 cut(s)	65, 97
AluI	AGCT	2 cut(s)	65, 97
Alw26I	GTCTC	2 cut(s)	46, 228
AoxI	GGCC	3 cut(s)	126, 420, 424
ApeKI	GCWGC	2 cut(s)	5, 83
ApoI	RAATTY	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	368
AsuII	TTCGAA	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	46, 228
BisI	GCNGC	3 cut(s)	6, 84, 87
BlsI	GCNGC	3 cut(s)	7, 85, 88
Bme1390I	CCNGG	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	400
BmrI	ACTGGG	1 cut(s)	425
BmsI	GCATC	1 cut(s)	63
BmuI	ACTGGG	1 cut(s)	425
Bpu14I	TTCGAA	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	221, 399
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	3 cut(s)	113, 369, 431
BseDI	CCNNGG	2 cut(s)	221, 399
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMII	CTCAG	2 cut(s)	51, 219
BseNI	ACTGG	3 cut(s)	113, 369, 431
BseXI	GCAGC	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	128, 422, 426
BsiEI	CGRYCG	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	399, 423
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	2 cut(s)	46, 228
BsnI	GGCC	3 cut(s)	128, 422, 426
Bsp119I	TTCGAA	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	3 cut(s)	128, 422, 426
BspCNI	CTCAG	2 cut(s)	50, 220
BspT104I	TTCGAA	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	3 cut(s)	113, 369, 431
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	2 cut(s)	221, 399
BssMI	GATC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	37, 228
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	46, 228
BstMBI	GATC	1 cut(s)	138
BstMCI	CGRYCG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	95
BsuRI	GGCC	3 cut(s)	128, 422, 426
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	3 cut(s)	120, 129, 157
Cac8I	GCNNGC	1 cut(s)	424
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	366, 372
CspCI	CAANNNNNGTGG	5 cut(s)	280, 315, 318, 353, 416
CviAII	CATG	2 cut(s)	257, 281
CviJI	RGCY	8 cut(s)	5, 65, 86, 97, 128, 285, 422, 426
CviKI_1	RGCY	8 cut(s)	5, 65, 86, 97, 128, 285, 422, 426
CviQI	GTAC	2 cut(s)	366, 372
DdeI	CTNAG	2 cut(s)	37, 228
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EaeI	YGGCCR	2 cut(s)	420, 424
Eco130I	CCWWGG	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	2 cut(s)	260, 284
FaiI	YATR	6 cut(s)	59, 258, 282, 288, 351, 408
FatI	CATG	2 cut(s)	256, 280
Fnu4HI	GCNGC	3 cut(s)	6, 84, 87
FseI	GGCCGGCC	1 cut(s)	426
Fsp4HI	GCNGC	3 cut(s)	6, 84, 87
FspI	TGCGCA	1 cut(s)	9
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	3 cut(s)	6, 84, 87
HaeIII	GGCC	3 cut(s)	128, 422, 426
HapII	CCGG	2 cut(s)	399, 423
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	260, 284
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	3 cut(s)	78, 134, 412
HpaII	CCGG	2 cut(s)	399, 423
HphI	GGTGA	1 cut(s)	368
Hpy188I	TCNGA	3 cut(s)	214, 229, 385
Hpy188III	TCNNGA	1 cut(s)	307
HpyAV	CCTTC	2 cut(s)	41, 261
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	2 cut(s)	242, 280
HpyF3I	CTNAG	2 cut(s)	37, 228
Hsp92II	CATG	2 cut(s)	260, 284
HspAI	GCGC	1 cut(s)	8
KroI	GCCGGC	1 cut(s)	422
KroNI	GCCGGC	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	6 cut(s)	29, 51, 126, 382, 412, 436
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	104, 197
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MluCI	AATT	2 cut(s)	169, 388
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	5 cut(s)	118, 201, 256, 314, 433
MroNI	GCCGGC	1 cut(s)	422
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	2 cut(s)	399, 423
MspR9I	CCNGG	1 cut(s)	400
NaeI	GCCGGC	1 cut(s)	424
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	1 cut(s)	138
NgoMIV	GCCGGC	1 cut(s)	422
NlaIII	CATG	2 cut(s)	260, 284
NmuCI	GTSAC	2 cut(s)	104, 197
NsbI	TGCGCA	1 cut(s)	9
NspV	TTCGAA	1 cut(s)	392
PdiI	GCCGGC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	78, 412
PkrI	GCNGC	3 cut(s)	7, 85, 88
Ple19I	CGATCG	1 cut(s)	141
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PvuI	CGATCG	1 cut(s)	141
RigI	GGCCGGCC	1 cut(s)	426
RsaI	GTAC	2 cut(s)	367, 373
RsaNI	GTAC	2 cut(s)	366, 372
RseI	CAYNNNNRTG	1 cut(s)	285
SatI	GCNGC	3 cut(s)	6, 84, 87
Sau3AI	GATC	1 cut(s)	138
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	400
SetI	ASST	8 cut(s)	18, 33, 67, 99, 267, 306, 358, 444
SfaNI	GCATC	1 cut(s)	63
SfuI	TTCGAA	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	2 cut(s)	169, 388
SsiI	CCGC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	2 cut(s)	137, 392
TasI	AATT	2 cut(s)	169, 388
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	78, 412
TscAI	CASTG	3 cut(s)	120, 136, 164
TseFI	GTSAC	2 cut(s)	104, 197
TseI	GCWGC	2 cut(s)	5, 83
Tsp45I	GTSAC	2 cut(s)	104, 197
TspRI	CASTG	3 cut(s)	120, 136, 164
XapI	RAATTY	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.