Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002931

Physical Location & Seq

Genomic Coordinates Forward (+)

8657185 .. 8657499

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG101600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCTTTTGTGGGTTATCTGGAGAGTGTTTCGAACCTGCATTCTTCTGAGTTGCGCAGCATATGGCTGGGTCGACTTATAGATAACAAGTTTAAGCTCCCAAGTGTGGATAAAATGCTCGAGCAGACGACTAAAGAGCTGGAAGTGATGAAGGACACCACCAGGTTCTACAAGAGGTTCTGCATCTCTACTTTTAGCATCAACCACAGTGACGAAATTTGTGAGGAGATGGGATGGACATCTTGGAGGAAGAATACCTGGTTGGCAGAGGCATTTAGCCCTTATGGGAGTCAAGATTATCTGCAGAAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

104

Amino Acids

12.33

Weight (kDa)

6.1

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19250 AT5G45180
fragaria_vesca	FvH4_1g09240 FvH4_2g37000
malus_domestica	MD02G1099600.v1.1 MD08G1046700.v1.1 MD08G1046800.v1.1 MD15G1047200.v1.1 MD15G1222400.v1.1
prunus_persica	Prupe.1G401400_v2.0.a1 Prupe.7G193500_v2.0.a1
pyrus_communis	pycom02g07750 pycom08g03910 pycom08g03920 pycom15g04540 pycom15g04600
rosa_chinensis	RchiOBHm_Chr2g0095771 RchiOBHm_Chr6g0304751
rosa_laevigata	RLG00000010953 RLG00000016591
rosa_multiflora	Rmu_co8416307.1_g000001 Rmu_sc0031036.1_g000001 Rmu_ssc0000139.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146110 Rroxscaffold_7G00163530
rosa_rugosa	Rorug02G0053100 Rorug06G0334200
rosa_samantha	Rh2AG101500 Rh2AG101600 Rh2BG103200 Rh2CG105500 Rh2DG102900 Rh6AG446100 Rh6BG455500 Rh6CG459500 Rh6DG446400
rosa_wichuraiana	Rw2G007710 Rw6G038810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	106
AjnI	CCWGG	2 cut(s)	161, 257
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	2 cut(s)	97, 139
AluI	AGCT	2 cut(s)	97, 139
Ama87I	CYCGRG	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	57
AsuII	TTCGAA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	223, 228
BciT130I	CCWGG	2 cut(s)	163, 259
BfmI	CTRYAG	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	2 cut(s)	163, 259
BmeT110I	CYCGRG	1 cut(s)	119
BmrFI	CCNGG	2 cut(s)	163, 259
BmsI	GCATC	2 cut(s)	192, 207
BpmI	CTGGAG	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse8I	GATNNNNATC	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	163, 259
BseGI	GGATG	1 cut(s)	239
BseJI	GATNNNNATC	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	69
BseYI	CCCAGC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	306
BspMI	ACCTGC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	163, 259
Bst4CI	ACNGT	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	57
BstNI	CCWGG	2 cut(s)	163, 259
BstSCI	CCNGG	2 cut(s)	161, 257
BstSFI	CTRYAG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	57
CsiI	ACCWGGT	2 cut(s)	161, 257
CviJI	RGCY	5 cut(s)	5, 67, 97, 139, 279
CviKI_1	RGCY	5 cut(s)	5, 67, 97, 139, 279
DdeI	CTNAG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	161, 257
FaiI	YATR	4 cut(s)	62, 64, 80, 285
FauNDI	CATATG	1 cut(s)	62
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	58
FspI	TGCGCA	1 cut(s)	56
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	1 cut(s)	58
GsaI	CCCAGC	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	57
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	2 cut(s)	20, 293
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	40, 183, 304
HpyF3I	CTNAG	1 cut(s)	48
HspAI	GCGC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	8 cut(s)	5, 50, 53, 125, 148, 175, 244, 271
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	2 cut(s)	192, 207
MabI	ACCWGGT	2 cut(s)	161, 257
MaeIII	GTNAC	1 cut(s)	209
MboII	GAAGA	2 cut(s)	36, 262
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	4 cut(s)	168, 217, 240, 262
MseI	TTAA	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	163, 259
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	2 cut(s)	163, 259
NdeI	CATATG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	209
NsbI	TGCGCA	1 cut(s)	56
NspV	TTCGAA	1 cut(s)	32
PaeR7I	CTCGAG	1 cut(s)	119
PctI	GAATGC	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	161, 257
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	2 cut(s)	161, 257
PspXI	VCTCGAGB	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	306
SalI	GTCGAC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	163, 259
SetI	ASST	6 cut(s)	39, 99, 141, 167, 179, 260
SexAI	ACCWGGT	2 cut(s)	161, 257
SfaNI	GCATC	2 cut(s)	192, 207
SfcI	CTRYAG	1 cut(s)	302
Sfr274I	CTCGAG	1 cut(s)	119
SfuI	TTCGAA	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	161, 257
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	3 cut(s)	32, 73, 120
TasI	AATT	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	216
XhoI	CTCGAG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.