Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002931

Physical Location & Seq

Genomic Coordinates Reverse (-)

2707345 .. 2709380

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g04540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAATTCGACCTCCGGGGAGTATGGTGGCCTTTTCAATGGCCATCTTGTTTGGGAGGTCGCTGTTCAGATGTCCAGCAATCCAAACATCATTCAGTGGTATGCATTCGAGTTCATCGTAGTTTGCATTGGAAAATATGGAGACATACCAAGAATGCCGAGTTTCCCGCGCAACAAAGGTCAAGAAGTATTTCAAGGCAAAGTCTTGCACTCCCTGGATTACTCTAAGCTTGACCAACGAGCGGCTCGTGAGCTCCTCAAAGGCAAAAAAGTTGCAGTTATTGGCTACAAGAAGTCAGCTATTGACGTGGCAGTTGAGTGCGCAGAGGCAAACCATGGACCCGATGGGCAGGCATGCACAATGGTGATAAGGACTCTACATTGGACAGTTCCATCTTACTGGATTTGGGGGCTTCCATTTTTCCTGTTTTTTTCGACAAGGTCTTCTCAATTCCTCCACGAAAGGCCAAACCAGAGCTTATTCCGAGCCTTGTTTTGCCTTCTTTCATCGCCTATGAGGATGGTAATTTCCAAGTTCATAGAATTGTACTTGGAGTGGAAGCTTCCCCTTGTGAAGTATGGACTAAAGCCTGATCGATCCATTTTTGGAGGACTATGCTTCATGCCAGATGGCTATTTTACCGGAAAATTTCTTCGCCGAGGCGGACAAGGGCAAAATATTGTTCAAAAGGTCATCAAAGTGGTGGTTTTGGAGCGGAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

242

Amino Acids

27.53

Weight (kDa)

9.59

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19250 AT5G45180
fragaria_vesca	FvH4_1g09240 FvH4_2g37000
malus_domestica	MD02G1099600.v1.1 MD08G1046700.v1.1 MD08G1046800.v1.1 MD15G1047200.v1.1 MD15G1222400.v1.1
prunus_persica	Prupe.1G401400_v2.0.a1 Prupe.7G193500_v2.0.a1
pyrus_communis	pycom02g07750 pycom08g03910 pycom08g03920 pycom15g04540 pycom15g04600
rosa_chinensis	RchiOBHm_Chr2g0095771 RchiOBHm_Chr6g0304751
rosa_laevigata	RLG00000010953 RLG00000016591
rosa_multiflora	Rmu_co8416307.1_g000001 Rmu_sc0031036.1_g000001 Rmu_ssc0000139.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146110 Rroxscaffold_7G00163530
rosa_rugosa	Rorug02G0053100 Rorug06G0334200
rosa_samantha	Rh2AG101500 Rh2AG101600 Rh2BG103200 Rh2CG105500 Rh2DG102900 Rh6AG446100 Rh6BG455500 Rh6CG459500 Rh6DG446400
rosa_wichuraiana	Rw2G007710 Rw6G038810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	322
AccBSI	CCGCTC	2 cut(s)	242, 715
AccII	CGCG	1 cut(s)	169
AciI	CCGC	4 cut(s)	167, 242, 663, 715
AclWI	GGATC	1 cut(s)	591
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	4, 647
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	3 cut(s)	37, 194, 686
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	213
AleI	CACNNNNGTG	1 cut(s)	362
AluBI	AGCT	5 cut(s)	229, 253, 299, 477, 562
AluI	AGCT	5 cut(s)	229, 253, 299, 477, 562
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	591
AoxI	GGCC	3 cut(s)	28, 40, 464
ApoI	RAATTY	2 cut(s)	4, 647
Asp700I	GAANNNNTTC	1 cut(s)	189
AspLEI	GCGC	2 cut(s)	171, 323
AspS9I	GGNCC	1 cut(s)	338
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	5 cut(s)	51, 338, 400, 514, 623
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	135
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	2 cut(s)	16, 215
Bme18I	GGWCC	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	2 cut(s)	16, 215
BpiI	GAAGAC	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	16
Bsa29I	ATCGAT	1 cut(s)	595
BsaJI	CCNNGG	4 cut(s)	15, 213, 334, 658
BsaWI	WCCGGW	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	595
BseDI	CCNNGG	4 cut(s)	15, 213, 334, 658
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	169
BshFI	GGCC	3 cut(s)	30, 42, 466
BshVI	ATCGAT	1 cut(s)	595
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	15, 642
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	135
BsmI	GAATGC	2 cut(s)	104, 159
BsnI	GGCC	3 cut(s)	30, 42, 466
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	592, 596
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	4 cut(s)	167, 242, 663, 715
BspANI	GGCC	3 cut(s)	30, 42, 466
BspDI	ATCGAT	1 cut(s)	595
BspFNI	CGCG	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	591
BsrBI	CCGCTC	2 cut(s)	242, 715
BsrI	ACTGG	1 cut(s)	404
BssECI	CCNNGG	4 cut(s)	15, 213, 334, 658
BssMI	GATC	2 cut(s)	592, 596
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	351, 355
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	1 cut(s)	169
BstHHI	GCGC	2 cut(s)	171, 323
BstKTI	GATC	2 cut(s)	595, 599
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	2 cut(s)	592, 596
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	357
BstSCI	CCNGG	2 cut(s)	14, 213
BstUI	CGCG	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	399
Bsu15I	ATCGAT	1 cut(s)	595
BsuRI	GGCC	3 cut(s)	30, 42, 466
BsuTUI	ATCGAT	1 cut(s)	595
BtgI	CCRYGG	1 cut(s)	334
BtgZI	GCGATG	1 cut(s)	492
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	351, 355
CfoI	GCGC	2 cut(s)	171, 323
Cfr13I	GGNCC	1 cut(s)	338
ClaI	ATCGAT	1 cut(s)	595
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	3 cut(s)	335, 354, 622
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	2 cut(s)	594, 598
DpnII	GATC	2 cut(s)	592, 596
EaeI	YGGCCR	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	678
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	3 cut(s)	338, 357, 625
FatI	CATG	3 cut(s)	334, 353, 621
FauI	CCCGC	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	532
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	243
FspI	TGCGCA	1 cut(s)	322
GlaI	GCGC	2 cut(s)	170, 322
GluI	GCNGC	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	30, 42, 466
HapII	CCGG	2 cut(s)	15, 642
HhaI	GCGC	2 cut(s)	171, 323
Hin1II	CATG	3 cut(s)	338, 357, 625
Hin6I	GCGC	2 cut(s)	169, 321
HinP1I	GCGC	2 cut(s)	169, 321
HindIII	AAGCTT	2 cut(s)	227, 560
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	2 cut(s)	15, 642
HphI	GGTGA	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	69, 485
Hpy188III	TCNNGA	2 cut(s)	182, 248
HpyAV	CCTTC	1 cut(s)	509
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	5 cut(s)	104, 126, 208, 275, 357
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	338, 357, 625
HspAI	GCGC	2 cut(s)	169, 321
Kzo9I	GATC	2 cut(s)	592, 596
LmnI	GCTCC	2 cut(s)	258, 712
MaeII	ACGT	1 cut(s)	306
MalI	GATC	2 cut(s)	594, 598
MbiI	CCGCTC	2 cut(s)	242, 715
MboI	GATC	2 cut(s)	592, 596
MboII	GAAGA	2 cut(s)	435, 644
MhlI	GDGCHC	1 cut(s)	255
MlsI	TGGCCA	1 cut(s)	42
MluCI	AATT	6 cut(s)	4, 449, 525, 542, 647, 721
MluNI	TGGCCA	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	367
MnlI	CCTC	9 cut(s)	22, 49, 266, 319, 464, 510, 602, 653, 711
Mox20I	TGGCCA	1 cut(s)	42
Mph1103I	ATGCAT	1 cut(s)	106
MroXI	GAANNNNTTC	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	42
MslI	CAYNNNNRTG	2 cut(s)	362, 698
Msp20I	TGGCCA	1 cut(s)	42
MspI	CCGG	2 cut(s)	15, 642
MspR9I	CCNGG	2 cut(s)	16, 215
Mva1269I	GAATGC	2 cut(s)	104, 159
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	169
NciI	CCSGG	1 cut(s)	16
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	2 cut(s)	592, 596
NlaIII	CATG	3 cut(s)	338, 357, 625
NlaIV	GGNNCC	1 cut(s)	340
NmeAIII	GCCGAG	2 cut(s)	183, 683
NsbI	TGCGCA	1 cut(s)	322
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	1 cut(s)	357
OliI	CACNNNNGTG	1 cut(s)	362
PaeI	GCATGC	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 244
PctI	GAATGC	2 cut(s)	104, 159
PdmI	GAANNNNTTC	1 cut(s)	189
PflFI	GACNNNGTC	1 cut(s)	439
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	338
PsyI	GACNNNGTC	1 cut(s)	439
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	2 cut(s)	362, 698
SacI	GAGCTC	1 cut(s)	255
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	592, 596
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	2 cut(s)	16, 215
SduI	GDGCHC	1 cut(s)	255
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	2 cut(s)	362, 698
SphI	GCATGC	1 cut(s)	357
Sse9I	AATT	6 cut(s)	4, 449, 525, 542, 647, 721
SsiI	CCGC	4 cut(s)	167, 242, 663, 715
SspI	AATATT	1 cut(s)	679
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	14, 213
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	4 cut(s)	8, 108, 434, 595
TasI	AATT	6 cut(s)	4, 449, 525, 542, 647, 721
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	1 cut(s)	245
TscAI	CASTG	1 cut(s)	101
TspDTI	ATGAA	5 cut(s)	17, 103, 495, 526, 610
TspRI	CASTG	1 cut(s)	101
Tth111I	GACNNNGTC	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	2 cut(s)	4, 647
XceI	RCATGY	1 cut(s)	357
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.