Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Reverse (-)

19310192 .. 19312747

Gene Structure 2556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCTGCTTCTAGTTCCTCCACAAATCCCATGTCCCGTGAGGACGCAACAACACTGCTTCCGTCTGTTCAAGACAAGTACGGTGGCGTGATGACCGAGATGACTCATCCCATGGATCCTTCTCTCTTCTCCACACTTCTCCGATCCTCTCTATCTACCTGGACTCTTCAGGGCAAAAAGGGAGTGTGGATCAAGTTGCCAAAGCAGCTTATTGGTCTTGCTGAAACTGCTGTTAAGGAGGGATTCTGGTTTCACCACGCGGAGAAAGACTACTTGATGCTTGTCTATTGGATTCCCAAAGAAGACGATACGCTTCCTGCCAATGCATCTCACCGTGTTGGCATAGGTGCCTTTGTCATTAACCACAACAAAGAGGTGCTGGTGGTTCAAGAGAAGACAGGGAGATTTCAAGGTCAAGGTATCTGGAAGTTCCCCACCGGAGTTGTGAATGAGGGTGAAGACATTCATGATGGCTCAGTCAGAGAGGTGAAAGAAGAGACCGGAGTGGATACAGAATTCGACCAAATATTGGCCTTCAGACAAACACACAAAGCGTTCTTTGGAAAGTCAGATTTGTTCTTCGTGTGCATGTTAAAGCCCCTTTCTTTGGAGATCAACGCACAGGAGTCAGAGATTGAGGCAGCTCAGTGGATGCCTTGGGAGGAATACATAAATCAACCATTTGTACAAAATTATGAGCTATTGAGGTATATGACAGACATTTGCTCTGCTAAAACCAACGGAGACTACGAAGGCTTCACTCCTCTCCGCGTCTCTGCACCTGATCAACAAGGCAACTTGTACTACAACACCCGCGACTTACATTCGCGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

278

Amino Acids

31.61

Weight (kDa)

5.22

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	20 - 98	7.6e-28	Nudix hydrolase domain
NUDIX	PF00293	111 - 225	9.3e-21	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	529
AccII	CGCG	4 cut(s)	260, 771, 816, 829
AciI	CCGC	3 cut(s)	260, 769, 814
AclWI	GGATC	4 cut(s)	110, 123, 138, 197
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	2 cut(s)	152, 520
AfaI	GTAC	3 cut(s)	80, 687, 803
AfiI	CCNNNNNNNGG	2 cut(s)	529, 607
AgsI	TTSAA	3 cut(s)	71, 389, 410
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	3 cut(s)	208, 644, 700
AluI	AGCT	3 cut(s)	208, 644, 700
Alw26I	GTCTC	3 cut(s)	491, 738, 778
AlwI	GGATC	4 cut(s)	110, 123, 138, 197
AoxI	GGCC	1 cut(s)	531
ApeKI	GCWGC	2 cut(s)	205, 641
ApoI	RAATTY	1 cut(s)	515
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
Asp700I	GAANNNNTTC	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	831
AsuHPI	GGTGA	4 cut(s)	245, 323, 467, 499
BamHI	GGATCC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	347
BbsI	GAAGAC	3 cut(s)	309, 401, 465
BbvI	GCAGC	2 cut(s)	217, 653
BccI	CCATC	1 cut(s)	464
BciT130I	CCWGG	1 cut(s)	160
BciVI	GTATCC	1 cut(s)	502
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	3 cut(s)	491, 738, 778
BfaI	CTAG	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	2 cut(s)	206, 642
BlsI	GCNGC	2 cut(s)	207, 643
Bme1390I	CCNGG	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	117, 349
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	3 cut(s)	267, 335, 642
BpiI	GAAGAC	3 cut(s)	309, 401, 465
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	111, 656
BsaWI	WCCGGW	2 cut(s)	437, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 607
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	2 cut(s)	111, 656
BseGI	GGATG	2 cut(s)	106, 657
BseLI	CCNNNNNNNGG	2 cut(s)	529, 607
BseMII	CTCAG	2 cut(s)	489, 659
BseRI	GAGGAG	1 cut(s)	753
BseXI	GCAGC	2 cut(s)	217, 653
BsgI	GTGCAG	1 cut(s)	762
Bsh1236I	CGCG	4 cut(s)	260, 771, 816, 829
BshFI	GGCC	1 cut(s)	533
BshNI	GGYRCC	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	438, 501
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	529, 607
BsmAI	GTCTC	3 cut(s)	491, 738, 778
BsmBI	CGTCTC	1 cut(s)	778
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	533
Bso31I	GGTCTC	1 cut(s)	491
Bsp1407I	TGTACA	1 cut(s)	685
Bsp143I	GATC	5 cut(s)	115, 143, 189, 612, 784
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	3 cut(s)	260, 769, 814
BspANI	GGCC	1 cut(s)	533
BspCNI	CTCAG	2 cut(s)	488, 658
BspFNI	CGCG	4 cut(s)	260, 771, 816, 829
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	117, 349
BspPI	GGATC	4 cut(s)	110, 123, 138, 197
BspT107I	GGYRCC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	491
BsrGI	TGTACA	1 cut(s)	685
BssECI	CCNNGG	2 cut(s)	111, 656
BssMI	GATC	5 cut(s)	115, 143, 189, 612, 784
BssT1I	CCWWGG	2 cut(s)	111, 656
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	83, 335
Bst6I	CTCTTC	3 cut(s)	131, 171, 489
BstAUI	TGTACA	1 cut(s)	685
BstDEI	CTNAG	2 cut(s)	475, 645
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	106, 657
BstFNI	CGCG	4 cut(s)	260, 771, 816, 829
BstHHI	GCGC	1 cut(s)	831
BstKTI	GATC	5 cut(s)	118, 146, 192, 615, 787
BstMAI	GTCTC	3 cut(s)	491, 738, 778
BstMBI	GATC	5 cut(s)	115, 143, 189, 612, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 227
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	1 cut(s)	158
BstUI	CGCG	4 cut(s)	260, 771, 816, 829
BstV1I	GCAGC	2 cut(s)	217, 653
BstV2I	GAAGAC	3 cut(s)	309, 401, 465
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	533
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	106, 657
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	53, 653
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	1 cut(s)	831
CseI	GACGC	2 cut(s)	53, 760
Csp6I	GTAC	3 cut(s)	79, 686, 802
CspCI	CAANNNNNGTGG	4 cut(s)	64, 99, 424, 459
CviAII	CATG	4 cut(s)	31, 112, 467, 589
CviJI	RGCY	7 cut(s)	208, 474, 533, 598, 644, 700, 756
CviKI_1	RGCY	7 cut(s)	208, 474, 533, 598, 644, 700, 756
CviQI	GTAC	3 cut(s)	79, 686, 802
DdeI	CTNAG	2 cut(s)	475, 645
DpnI	GATC	5 cut(s)	117, 145, 191, 614, 786
DpnII	GATC	5 cut(s)	115, 143, 189, 612, 784
Eam1104I	CTCTTC	3 cut(s)	131, 171, 489
EarI	CTCTTC	3 cut(s)	131, 171, 489
Eco130I	CCWWGG	2 cut(s)	111, 656
Eco31I	GGTCTC	1 cut(s)	491
Eco57I	CTGAAG	2 cut(s)	152, 520
EcoRI	GAATTC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	111, 656
EcoT22I	ATGCAT	1 cut(s)	328
ErhI	CCWWGG	2 cut(s)	111, 656
Esp3I	CGTCTC	1 cut(s)	778
FaeI	CATG	4 cut(s)	34, 115, 470, 592
FaiI	YATR	9 cut(s)	32, 113, 344, 468, 590, 671, 696, 711, 713
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	4 cut(s)	30, 111, 466, 588
FauI	CCCGC	1 cut(s)	821
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	2 cut(s)	206, 642
FokI	GGATG	2 cut(s)	93, 664
Fsp4HI	GCNGC	2 cut(s)	206, 642
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	830
GluI	GCNGC	2 cut(s)	206, 642
HaeIII	GGCC	1 cut(s)	533
HapII	CCGG	2 cut(s)	438, 501
HgaI	GACGC	2 cut(s)	53, 760
HhaI	GCGC	1 cut(s)	831
Hin1II	CATG	4 cut(s)	34, 115, 470, 592
Hin6I	GCGC	1 cut(s)	829
HinP1I	GCGC	1 cut(s)	829
HinfI	GANTC	5 cut(s)	103, 163, 243, 292, 626
HpaII	CCGG	2 cut(s)	438, 501
HphI	GGTGA	4 cut(s)	245, 323, 467, 499
Hpy188I	TCNGA	5 cut(s)	143, 482, 539, 571, 631
Hpy188III	TCNNGA	4 cut(s)	71, 389, 424, 467
HpyAV	CCTTC	3 cut(s)	129, 544, 746
HpyCH4III	ACNGT	2 cut(s)	83, 335
HpyCH4V	TGCA	3 cut(s)	326, 588, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 227
HpyF3I	CTNAG	2 cut(s)	475, 645
Hsp92II	CATG	4 cut(s)	34, 115, 470, 592
HspAI	GCGC	1 cut(s)	829
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	5 cut(s)	115, 143, 189, 612, 784
Lsp1109I	GCAGC	2 cut(s)	217, 653
LweI	GCATC	3 cut(s)	267, 335, 642
MaeI	CTAG	1 cut(s)	12
MalI	GATC	5 cut(s)	117, 145, 191, 614, 786
MboI	GATC	5 cut(s)	115, 143, 189, 612, 784
MboII	GAAGA	7 cut(s)	118, 158, 314, 406, 470, 506, 571
MfeI	CAATTG	1 cut(s)	832
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	3 cut(s)	515, 691, 832
MlyI	GAGTC	3 cut(s)	97, 157, 635
Mph1103I	ATGCAT	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	3 cut(s)	234, 360, 593
MspI	CCGG	2 cut(s)	438, 501
MspR9I	CCNGG	1 cut(s)	160
MunI	CAATTG	1 cut(s)	832
MvaI	CCWGG	1 cut(s)	160
MvnI	CGCG	4 cut(s)	260, 771, 816, 829
MwoI	GCNNNNNNNGC	2 cut(s)	205, 227
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	5 cut(s)	115, 143, 189, 612, 784
NlaIII	CATG	4 cut(s)	34, 115, 470, 592
NlaIV	GGNNCC	2 cut(s)	117, 349
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	1 cut(s)	592
PagI	TCATGA	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	747
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	243, 292
PflMI	CCANNNNNTGG	1 cut(s)	529
PkrI	GCNGC	2 cut(s)	207, 643
PleI	GAGTC	3 cut(s)	97, 157, 634
PpsI	GAGTC	3 cut(s)	97, 157, 634
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	117, 349
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	3 cut(s)	80, 687, 803
RsaNI	GTAC	3 cut(s)	79, 686, 802
SaqAI	TTAA	3 cut(s)	234, 360, 593
SatI	GCNGC	2 cut(s)	206, 642
Sau3AI	GATC	5 cut(s)	115, 143, 189, 612, 784
SchI	GAGTC	3 cut(s)	97, 157, 635
ScrFI	CCNGG	1 cut(s)	160
SfaNI	GCATC	3 cut(s)	267, 335, 642
Sse9I	AATT	3 cut(s)	515, 691, 832
SsiI	CCGC	3 cut(s)	260, 769, 814
SspI	AATATT	1 cut(s)	528
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	2 cut(s)	111, 656
TaaI	ACNGT	2 cut(s)	83, 335
TaqI	TCGA	1 cut(s)	519
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	3 cut(s)	515, 691, 832
TatI	WGTACW	2 cut(s)	685, 801
TfiI	GAWTC	2 cut(s)	243, 292
Tru1I	TTAA	3 cut(s)	234, 360, 593
Tru9I	TTAA	3 cut(s)	234, 360, 593
TscAI	CASTG	2 cut(s)	60, 653
TseI	GCWGC	2 cut(s)	205, 641
TspDTI	ATGAA	1 cut(s)	455
TspGWI	ACGGA	2 cut(s)	51, 756
TspRI	CASTG	2 cut(s)	60, 653
Van91I	CCANNNNNTGG	1 cut(s)	529
XapI	RAATTY	1 cut(s)	515
XceI	RCATGY	1 cut(s)	592
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.