Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Forward (+)

331164 .. 344551

Gene Structure 13388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG004900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCCGCTAAAGCTGAAAGTAGTGATGAGAGTGGGGTGAAGCTGCTCAGTGGTATCAATGACCAGTACGGAGGTGTCATCGTCGACATCATCGATCCTATCGACCCTGCCTCCTTCCTTTCATTTCTTACGTCTTCAATTGCACATTGGAAACTTGAGGGCAAGAAGGGTATTTGGATCAAATTGCCCATCCAGCGAGTCAATCTTGTTGAACCTGCAGTGATGAAAGGATTCTGGTATCACCACGCAGAGCCTACTTATTTGATGCTGGTAAATTGGATTCCTCCTTCCCCGCATACTCTTCCAGCAAATGCTTCCCACCGAGTCGGAATTGGTGCATTTCTCCTCAACCAAAACCGAGAGGTGCTAGTAGTCCAAGAAAAGAGCGGAAAGTTCGAGGGTACAGGTGTGTGGAAATTCCCTACAGGAGTTGTCGATGAGGGAGAAGATATCTATGCAGCTGCTGTGAGAGAAGTAAAAGAAGAAACTGGAGTTGACTCAGAGTTTGTGGAAGTCCTAGCGTTCAGACAAAGCCACAAGTCATTTTTTGAGAAATCAGATTTATTTTTTGTATGCATGTTGCAAGCCCTTTCCTTTGACATCCAGAAGCAAGAACAAGAGATAGAAGCAGCCCAGTGGATGCCATTTGAAGAATATGCTGCCCAACCCTTTCTCCAGAACAATGAGCTTCTAAAGTACACCAATGCAATATGCAAGGCAAAAATGGAGGGGGAGTATTCTGGATTTTCTCCGGTAACTACAACTAGTTCTTCCGATGAGAAGAGCTACTTGTACTTGAATAGTAGTAGGGCCCCAAAGAGAGAAAGTAAAGTTGATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

280

Amino Acids

31.4

Weight (kDa)

5.1

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	16 - 94	1.4e-27	Nudix hydrolase domain
NUDIX	PF00293	107 - 223	1.2e-26	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AccBSI	CCGCTC	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	3 cut(s)	6, 293, 387
AclWI	GGATC	2 cut(s)	89, 185
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	416
AfaI	GTAC	4 cut(s)	68, 403, 698, 794
AgsI	TTSAA	4 cut(s)	138, 212, 650, 799
AhlI	ACTAGT	1 cut(s)	764
AluBI	AGCT	5 cut(s)	14, 43, 461, 688, 786
AluI	AGCT	5 cut(s)	14, 43, 461, 688, 786
AlwI	GGATC	2 cut(s)	89, 185
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	2 cut(s)	3, 810
ApaI	GGGCCC	1 cut(s)	814
ApeKI	GCWGC	5 cut(s)	43, 458, 461, 629, 659
ApoI	RAATTY	1 cut(s)	416
ArsI	GACNNNNNNTTYG	2 cut(s)	488, 520
Asp700I	GAANNNNTTC	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	810, 811
AsuHPI	GGTGA	2 cut(s)	49, 233
BaeGI	GKGCMC	1 cut(s)	814
BaeI	ACNNNNGTAYC	2 cut(s)	393, 426
BanII	GRGCYC	1 cut(s)	814
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	5 cut(s)	30, 448, 470, 641, 646
BccI	CCATC	1 cut(s)	197
BcuI	ACTAGT	1 cut(s)	764
BfaI	CTAG	3 cut(s)	368, 518, 765
BfmI	CTRYAG	2 cut(s)	216, 423
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	6 cut(s)	6, 44, 459, 462, 630, 660
BlsI	GCNGC	6 cut(s)	7, 45, 460, 463, 631, 661
BmgT120I	GGNCC	2 cut(s)	810, 811
BmiI	GGNNCC	2 cut(s)	812, 813
BmrI	ACTGGG	1 cut(s)	628
BmsI	GCATC	2 cut(s)	255, 630
BmuI	ACTGGG	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	126
BpmI	CTGGAG	2 cut(s)	510, 659
BpuEI	CTTGAG	1 cut(s)	176
Bsa29I	ATCGAT	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	751
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 657, 687, 719, 749
Bse1I	ACTGG	3 cut(s)	64, 493, 634
BseCI	ATCGAT	1 cut(s)	93
BseGI	GGATG	3 cut(s)	189, 600, 645
BseMII	CTCAG	2 cut(s)	61, 513
BseNI	ACTGG	3 cut(s)	64, 493, 634
BseRI	GAGGAG	1 cut(s)	335
BseSI	GKGCMC	1 cut(s)	814
BseXI	GCAGC	5 cut(s)	30, 448, 470, 641, 646
BshFI	GGCC	2 cut(s)	5, 812
BshVI	ATCGAT	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	752
BsnI	GGCC	2 cut(s)	5, 812
Bsp120I	GGGCCC	1 cut(s)	810
Bsp1286I	GDGCHC	1 cut(s)	814
Bsp143I	GATC	2 cut(s)	94, 177
BspACI	CCGC	3 cut(s)	6, 293, 387
BspANI	GGCC	2 cut(s)	5, 812
BspCNI	CTCAG	2 cut(s)	60, 512
BspDI	ATCGAT	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	812, 813
BspMAI	CTGCAG	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	89, 185
BspQI	GCTCTTC	1 cut(s)	776
BsrBI	CCGCTC	1 cut(s)	387
BsrI	ACTGG	3 cut(s)	64, 493, 634
BssMI	GATC	2 cut(s)	94, 177
Bst6I	CTCTTC	2 cut(s)	306, 776
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	2 cut(s)	47, 499
BstF5I	GGATG	3 cut(s)	189, 600, 645
BstKTI	GATC	2 cut(s)	97, 180
BstMBI	GATC	2 cut(s)	94, 177
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 193
BstNSI	RCATGY	1 cut(s)	580
BstSFI	CTRYAG	2 cut(s)	216, 423
BstSLI	GKGCMC	1 cut(s)	814
BstV1I	GCAGC	5 cut(s)	30, 448, 470, 641, 646
BstV2I	GAAGAC	1 cut(s)	126
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	5, 812
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	3 cut(s)	189, 600, 645
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	3 cut(s)	55, 225, 641
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	585
CaiI	CAGNNNCTG	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	810, 811
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	4 cut(s)	67, 402, 697, 793
CviAII	CATG	1 cut(s)	577
CviQI	GTAC	4 cut(s)	67, 402, 697, 793
DdeI	CTNAG	2 cut(s)	47, 499
DpnI	GATC	2 cut(s)	96, 179
DpnII	GATC	2 cut(s)	94, 177
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	306, 776
EarI	CTCTTC	2 cut(s)	306, 776
Eco24I	GRGCYC	1 cut(s)	814
Eco32I	GATATC	1 cut(s)	451
EcoO109I	RGGNCCY	2 cut(s)	810, 811
EcoRV	GATATC	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	814
FaeI	CATG	1 cut(s)	580
FaiI	YATR	6 cut(s)	297, 456, 574, 578, 657, 712
FalI	AAGNNNNNCTT	2 cut(s)	773, 805
FatI	CATG	1 cut(s)	576
FauI	CCCGC	1 cut(s)	300
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	6 cut(s)	6, 44, 459, 462, 630, 660
FokI	GGATG	3 cut(s)	176, 587, 652
FriOI	GRGCYC	1 cut(s)	814
Fsp4HI	GCNGC	6 cut(s)	6, 44, 459, 462, 630, 660
FspBI	CTAG	3 cut(s)	368, 518, 765
GluI	GCNGC	6 cut(s)	6, 44, 459, 462, 630, 660
GsuI	CTGGAG	2 cut(s)	510, 659
HaeIII	GGCC	2 cut(s)	5, 812
HapII	CCGG	1 cut(s)	752
Hin1II	CATG	1 cut(s)	580
HincII	GTYRAC	2 cut(s)	85, 496
HindII	GTYRAC	2 cut(s)	85, 496
HinfI	GANTC	5 cut(s)	198, 231, 280, 324, 497
HpaII	CCGG	1 cut(s)	752
HphI	GGTGA	2 cut(s)	49, 233
Hpy166II	GTNNAC	3 cut(s)	85, 496, 699
Hpy188I	TCNGA	5 cut(s)	329, 502, 527, 559, 775
Hpy188III	TCNNGA	3 cut(s)	604, 676, 741
Hpy8I	GTNNAC	3 cut(s)	85, 496, 699
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	124, 160, 297
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	8 cut(s)	143, 218, 338, 458, 576, 583, 707, 714
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 193
HpyF3I	CTNAG	2 cut(s)	47, 499
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	580
Kzo9I	GATC	2 cut(s)	94, 177
LguI	GCTCTTC	1 cut(s)	776
Lsp1109I	GCAGC	5 cut(s)	30, 448, 470, 641, 646
LweI	GCATC	2 cut(s)	255, 630
MaeI	CTAG	3 cut(s)	368, 518, 765
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	2 cut(s)	96, 179
MbiI	CCGCTC	1 cut(s)	387
MboI	GATC	2 cut(s)	94, 177
MboII	GAAGA	7 cut(s)	126, 293, 458, 494, 662, 762, 793
MfeI	CAATTG	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	814
MluCI	AATT	5 cut(s)	138, 182, 274, 330, 416
MlyI	GAGTC	3 cut(s)	207, 333, 491
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	9 cut(s)	65, 121, 151, 294, 355, 356, 391, 433, 721
Mph1103I	ATGCAT	1 cut(s)	578
MroXI	GAANNNNTTC	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	1 cut(s)	752
MunI	CAATTG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	11, 193
NdeII	GATC	2 cut(s)	94, 177
NlaIII	CATG	1 cut(s)	580
NlaIV	GGNNCC	2 cut(s)	812, 813
NsiI	ATGCAT	1 cut(s)	578
NspI	RCATGY	1 cut(s)	580
PciSI	GCTCTTC	1 cut(s)	776
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 99
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	231, 280
PkrI	GCNGC	6 cut(s)	7, 45, 460, 463, 631, 661
PleI	GAGTC	3 cut(s)	206, 332, 491
PpsI	GAGTC	3 cut(s)	206, 332, 491
PspN4I	GGNNCC	2 cut(s)	812, 813
PspOMI	GGGCCC	1 cut(s)	810
PspPI	GGNCC	2 cut(s)	810, 811
PstI	CTGCAG	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	464
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	4 cut(s)	68, 403, 698, 794
RsaNI	GTAC	4 cut(s)	67, 402, 697, 793
SalI	GTCGAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	776
SatI	GCNGC	6 cut(s)	6, 44, 459, 462, 630, 660
Sau3AI	GATC	2 cut(s)	94, 177
Sau96I	GGNCC	2 cut(s)	810, 811
SchI	GAGTC	3 cut(s)	207, 333, 491
SduI	GDGCHC	1 cut(s)	814
SfaNI	GCATC	2 cut(s)	255, 630
SfcI	CTRYAG	2 cut(s)	216, 423
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SpeI	ACTAGT	1 cut(s)	764
Sse9I	AATT	5 cut(s)	138, 182, 274, 330, 416
SsiI	CCGC	3 cut(s)	6, 293, 387
SspMI	CTAG	3 cut(s)	368, 518, 765
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	5 cut(s)	84, 93, 102, 396, 435
TasI	AATT	5 cut(s)	138, 182, 274, 330, 416
TatI	WGTACW	2 cut(s)	696, 792
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	231, 280
TscAI	CASTG	3 cut(s)	55, 225, 641
TseI	GCWGC	5 cut(s)	43, 458, 461, 629, 659
TspDTI	ATGAA	2 cut(s)	111, 239
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	3 cut(s)	55, 225, 641
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	3 cut(s)	368, 518, 765
Zsp2I	ATGCAT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.