Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Reverse (-)

9872972 .. 9874211

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1128200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTGATGCAGATGTTGAGAGCCACCACCAAGCTTTTGCCATATCTTTCTTCTACAGACAAAGGTTCTTCTGCGTCTTCTGTTGTTGCCTATCATCATTCTTTAACAAAGAGGCCTTGCTTTGGAACTCTTTCACCTTCTTCACCATCCTTGCCTGGCTTTCACAAAGATTCAAAAGATAAAGTTCCACACTTGATTCAAGCCGTGCAGGTTTCAACGAATTCATCCTCCGTTACACAACAAGCCGTGCTTGAAAATGAAGTCGAACAGGTTGAGTTGCTCGCTGCAGTTGAGGATTTATATGGAGGAGTTGCTGTGGACGTGACCAAACCTATGGATTCTGTAGTTTTTGCTTCTTTGCTTCAAGCTTCCATATTGCAATGGAGGCAAAAGGTTTGTATTCGTTGCTTTTGTTGTATGCCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

143

Amino Acids

15.46

Weight (kDa)

7.66

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	94 - 131	5.4e-06	Nudix hydrolase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	5 cut(s)	174, 200, 216, 254, 365
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	2 cut(s)	34, 368
AluI	AGCT	2 cut(s)	34, 368
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	220
Asp700I	GAANNNNTTC	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	126, 135
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	2 cut(s)	188, 230
BciT130I	CCWGG	1 cut(s)	156
BfmI	CTRYAG	3 cut(s)	54, 285, 342
BfuAI	ACCTGC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	156
BmgBI	CACGTC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	156
BseGI	GGATG	2 cut(s)	146, 224
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	122
BsnI	GGCC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	146, 224
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	3 cut(s)	54, 285, 342
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	146, 224
BveI	ACCTGC	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	282
CseI	GACGC	1 cut(s)	63
CviJI	RGCY	7 cut(s)	23, 34, 115, 159, 203, 245, 368
CviKI_1	RGCY	7 cut(s)	23, 34, 115, 159, 203, 245, 368
Eco147I	AGGCCT	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	154
FaiI	YATR	6 cut(s)	43, 301, 303, 335, 374, 419
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	2 cut(s)	133, 211
Fsp4HI	GCNGC	1 cut(s)	285
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	115
HgaI	GACGC	1 cut(s)	63
HindIII	AAGCTT	2 cut(s)	32, 366
HinfI	GANTC	3 cut(s)	170, 196, 338
HphI	GGTGA	2 cut(s)	126, 135
Hpy166II	GTNNAC	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	147
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	4 cut(s)	10, 208, 287, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpySE526I	ACGT	1 cut(s)	321
LpnPI	CCDG	4 cut(s)	141, 168, 194, 254
Lsp1109I	GCAGC	1 cut(s)	271
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	232, 322
MboII	GAAGA	4 cut(s)	42, 60, 69, 132
MluCI	AATT	1 cut(s)	220
MnlI	CCTC	5 cut(s)	105, 238, 286, 299, 378
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	115
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	170, 196, 338
PkrI	GCNGC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	9 cut(s)	36, 67, 139, 213, 273, 324, 334, 370, 396
SfcI	CTRYAG	3 cut(s)	54, 285, 342
Sse9I	AATT	1 cut(s)	220
SseBI	AGGCCT	1 cut(s)	115
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	154
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	264
TasI	AATT	1 cut(s)	220
TfiI	GAWTC	3 cut(s)	170, 196, 338
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	2 cut(s)	213, 273
TspGWI	ACGGA	1 cut(s)	220
XapI	RAATTY	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.