Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Forward (+)

311893 .. 324669

Gene Structure 12777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG004700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGGAAGCTACTGAGGGGTAGGAATGATGAGTATGGAGGTGTGATCGTCCACATGGATGATGAGGCTATGGACCCTGCCACTTTCATTTCATCTCTTGCCTCTTCACTTGCGGTTTGGAAGCTCCAGGGGAAGAAGGGTGTTTGGCTCAGATTGCCTATACAACGAGCCAACCTTGTTGAAGCTGCAGTCCAGCAAGGATTCTGGTACCACCATGCGGAGCCTCATTATTTGATGCTCGTCTATTGGCTTCACAAGTCTGCTCATACTCTTCCTGAAAATGCCACACACCGACTCGGAATTGGTGCTTTTCTAATCAATCAAAACAGAGAGGTGTTAGTAGTCCAAGAAAAGGGAGGACAGTATGGTGGGACAGGCGTGTGGAAGCTCCCTACTGGAGCTGTCGATGAGGGGGAAGATATCTATGCAGCAGCTGTGAGAGAAGTTAAAGAAGAAACAGGAATTGACTCAGAGTTTATAGAAATTCTAGCATTCAGACAGATCCACAAGTCGTTCTTTCAGAAATCGGATTTGTTTTTTCTGTGCATGTTGCGACCCCTCTCCTTTGACATCCAGAAGCAGGAACAAGAGATAGAAGCAGCCAAGTGGATGCCATTTGAGGAATATGCAGCTCAACCATATGCCCAGAAATATGAGTTTCTGATGTACCTCCATGACATATGCATAGCAAAGATTGATGGGAATTATACTGGATTTTCTCCAATACCTACAACTAGTTATTCTGTTCAGAAGAGCTACTTGTACTTGAATAGTACCGAAGCACCCAAGAGATATAGTAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

268

Amino Acids

30.64

Weight (kDa)

6.0

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	5 - 84	5.6e-31	Nudix hydrolase domain
NUDIX	PF00293	97 - 216	1.2e-25	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AciI	CCGC	2 cut(s)	113, 218
AclWI	GGATC	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	483
AfaI	GTAC	4 cut(s)	209, 668, 764, 775
AfiI	CCNNNNNNNGG	3 cut(s)	217, 352, 580
AgsI	TTSAA	2 cut(s)	182, 769
AhlI	ACTAGT	1 cut(s)	734
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	8 cut(s)	10, 124, 185, 388, 401, 434, 632, 756
AluI	AGCT	8 cut(s)	10, 124, 185, 388, 401, 434, 632, 756
AlwI	GGATC	1 cut(s)	496
AlwNI	CAGNNNCTG	1 cut(s)	434
ApeKI	GCWGC	5 cut(s)	185, 428, 431, 599, 629
ApoI	RAATTY	1 cut(s)	483
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	207
BbvI	GCAGC	5 cut(s)	172, 440, 443, 611, 641
BccI	CCATC	1 cut(s)	692
BciT130I	CCWGG	1 cut(s)	128
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	2 cut(s)	488, 735
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	5 cut(s)	186, 429, 432, 600, 630
BlsI	GCNGC	5 cut(s)	187, 430, 433, 601, 631
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	3 cut(s)	75, 209, 222
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	225, 600
BpmI	CTGGAG	2 cut(s)	110, 417
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 352, 580
Bse1I	ACTGG	2 cut(s)	400, 715
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	3 cut(s)	64, 570, 615
BseLI	CCNNNNNNNGG	3 cut(s)	217, 352, 580
BseMII	CTCAG	3 cut(s)	5, 163, 483
BseNI	ACTGG	2 cut(s)	400, 715
BseXI	GCAGC	5 cut(s)	172, 440, 443, 611, 641
BshNI	GGYRCC	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	3 cut(s)	217, 352, 580
BsmFI	GGGAC	1 cut(s)	385
BsmI	GAATGC	1 cut(s)	491
Bsp143I	GATC	2 cut(s)	45, 501
BspACI	CCGC	2 cut(s)	113, 218
BspCNI	CTCAG	3 cut(s)	6, 162, 482
BspLI	GGNNCC	3 cut(s)	75, 209, 222
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	496
BspQI	GCTCTTC	1 cut(s)	746
BspT107I	GGYRCC	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	400, 715
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	45, 501
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	363
Bst6I	CTCTTC	3 cut(s)	109, 276, 746
BstDEI	CTNAG	3 cut(s)	14, 149, 469
BstF5I	GGATG	3 cut(s)	64, 570, 615
BstKTI	GATC	2 cut(s)	48, 504
BstMBI	GATC	2 cut(s)	45, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	5 cut(s)	172, 440, 443, 611, 641
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
BtsCI	GGATG	3 cut(s)	64, 570, 615
CaiI	CAGNNNCTG	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	4 cut(s)	208, 667, 763, 774
CviAII	CATG	4 cut(s)	55, 215, 547, 674
CviQI	GTAC	4 cut(s)	208, 667, 763, 774
DdeI	CTNAG	3 cut(s)	14, 149, 469
DpnI	GATC	2 cut(s)	47, 503
DpnII	GATC	2 cut(s)	45, 501
Eam1104I	CTCTTC	3 cut(s)	109, 276, 746
EarI	CTCTTC	3 cut(s)	109, 276, 746
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	421
EcoT22I	ATGCAT	1 cut(s)	686
FaeI	CATG	4 cut(s)	58, 218, 550, 677
FalI	AAGNNNNNCTT	4 cut(s)	500, 532, 743, 775
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	4 cut(s)	54, 214, 546, 673
FauNDI	CATATG	2 cut(s)	640, 680
Fnu4HI	GCNGC	5 cut(s)	186, 429, 432, 600, 630
FokI	GGATG	3 cut(s)	71, 557, 622
Fsp4HI	GCNGC	5 cut(s)	186, 429, 432, 600, 630
FspBI	CTAG	2 cut(s)	488, 735
GluI	GCNGC	5 cut(s)	186, 429, 432, 600, 630
GsuI	CTGGAG	2 cut(s)	110, 417
Hin1II	CATG	4 cut(s)	58, 218, 550, 677
HinfI	GANTC	3 cut(s)	201, 294, 467
Hpy166II	GTNNAC	2 cut(s)	52, 800
Hpy188I	TCNGA	9 cut(s)	152, 299, 472, 497, 522, 529, 663, 750, 806
Hpy188III	TCNNGA	2 cut(s)	275, 574
Hpy8I	GTNNAC	2 cut(s)	52, 800
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4V	TGCA	5 cut(s)	188, 428, 546, 629, 684
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	3 cut(s)	14, 149, 469
Hsp92II	CATG	4 cut(s)	58, 218, 550, 677
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	45, 501
LguI	GCTCTTC	1 cut(s)	746
LmnI	GCTCC	4 cut(s)	129, 220, 393, 398
Lsp1109I	GCAGC	5 cut(s)	172, 440, 443, 611, 641
LweI	GCATC	2 cut(s)	225, 600
MaeI	CTAG	2 cut(s)	488, 735
MalI	GATC	2 cut(s)	47, 503
MboI	GATC	2 cut(s)	45, 501
MboII	GAAGA	6 cut(s)	96, 145, 263, 428, 464, 763
MflI	RGATCY	1 cut(s)	501
MluCI	AATT	4 cut(s)	300, 462, 483, 703
MlyI	GAGTC	2 cut(s)	288, 461
Mph1103I	ATGCAT	1 cut(s)	686
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	154
NdeI	CATATG	2 cut(s)	640, 680
NdeII	GATC	2 cut(s)	45, 501
NlaIII	CATG	4 cut(s)	58, 218, 550, 677
NlaIV	GGNNCC	3 cut(s)	75, 209, 222
NsiI	ATGCAT	1 cut(s)	686
NspI	RCATGY	1 cut(s)	550
PciSI	GCTCTTC	1 cut(s)	746
PctI	GAATGC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	201
PkrI	GCNGC	5 cut(s)	187, 430, 433, 601, 631
PleI	GAGTC	2 cut(s)	288, 461
PpsI	GAGTC	2 cut(s)	288, 461
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	75, 209, 222
PspPI	GGNCC	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	501
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	4 cut(s)	209, 668, 764, 775
RsaNI	GTAC	4 cut(s)	208, 667, 763, 774
RseI	CAYNNNNRTG	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	746
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	5 cut(s)	186, 429, 432, 600, 630
Sau3AI	GATC	2 cut(s)	45, 501
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	2 cut(s)	288, 461
ScrFI	CCNGG	1 cut(s)	128
SfaNI	GCATC	2 cut(s)	225, 600
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	57
SpeI	ACTAGT	1 cut(s)	734
Sse9I	AATT	4 cut(s)	300, 462, 483, 703
SsiI	CCGC	2 cut(s)	113, 218
SspMI	CTAG	2 cut(s)	488, 735
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	363
TaqI	TCGA	1 cut(s)	405
TasI	AATT	4 cut(s)	300, 462, 483, 703
TatI	WGTACW	1 cut(s)	762
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseI	GCWGC	5 cut(s)	185, 428, 431, 599, 629
TspDTI	ATGAA	2 cut(s)	76, 81
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	483
XceI	RCATGY	1 cut(s)	550
XspI	CTAG	2 cut(s)	488, 735
Zsp2I	ATGCAT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.