Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Forward (+)

350402 .. 352528

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGATGATGAGGCTATGGACTCTGCCACTTTCATTTCATCTCTTACCTCTTCAGTTGCGGTTTGGAAGCTCCAGGGGAAGAAGGGTGTTTGGCTCAGATTGCCTATACAACAAGCCAACCTTGTTGAAGCTGCAGTCCAGCAAGGATTCTGGCACCACCATTCGGAGCCTCATTATTTGATGCTCGTCTATTGGCTTCCCAAGTCTGCTCATACTCTTCCTGAAAATGCCACACACCGACTCGGAAATATTGGTGCTTTTCTAATCAATCAAAACAGAGAGGGGGAAGATATCTATGCAGCAGCTGTGAGAGAAGTTAAAGAAGAAACAGGAATTGACGCAGAGTTTATAGAAATTCTAGCATTCAGACAGATCCACAAGTCATTCTTTCAGAAATCGGATTTGTTTTTTCTGTGCATGTTGCGACCCCTCTCCTTTGACATCCAGAAGCAGGAACAAGAGATAGAAGCTGCAGCCAAGTGGATGCCATTTGAGGAATATGCAGCTCAACCATATGCCCAGAAATATGAGTTTCTGATGTACCCCCATGACATATGCATAGCAAAGATTGATGGGAACTATACCGGATTTTCTCCAATACCTACAACTAGCTATTCTGTTCAGAAGGGCTACTTGTACTTGAATAGTACCGAAGCACCCAAGAGATATAGTAAACTCTTATTATCAGACGCCTTGATATCAAATGTACCACTTCAAAGGATTCTTATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

245

Amino Acids

28.0

Weight (kDa)

5.76

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	3 - 66	3.2e-22	Nudix hydrolase domain
NUDIX	PF00293	94 - 172	1.6e-13	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	153
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	354
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	690
AfaI	GTAC	4 cut(s)	542, 638, 649, 708
AfiI	CCNNNNNNNGG	2 cut(s)	163, 451
AgsI	TTSAA	3 cut(s)	128, 643, 716
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	6 cut(s)	70, 131, 305, 470, 506, 612
AluI	AGCT	6 cut(s)	70, 131, 305, 470, 506, 612
AlwI	GGATC	1 cut(s)	367
AlwNI	CAGNNNCTG	1 cut(s)	305
ApeKI	GCWGC	6 cut(s)	131, 299, 302, 470, 473, 503
ApoI	RAATTY	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	153
BbvI	GCAGC	6 cut(s)	118, 311, 314, 457, 485, 515
BccI	CCATC	1 cut(s)	566
BciT130I	CCWGG	1 cut(s)	74
BfaI	CTAG	2 cut(s)	359, 609
BfmI	CTRYAG	2 cut(s)	132, 471
BisI	GCNGC	6 cut(s)	132, 300, 303, 471, 474, 504
BlsI	GCNGC	6 cut(s)	133, 301, 304, 472, 475, 505
Bme1390I	CCNGG	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	155, 168
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	2 cut(s)	171, 474
BpmI	CTGGAG	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	690
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 451
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	3 cut(s)	10, 441, 489
BseLI	CCNNNNNNNGG	2 cut(s)	163, 451
BseMII	CTCAG	1 cut(s)	109
BseXI	GCAGC	6 cut(s)	118, 311, 314, 457, 485, 515
BshNI	GGYRCC	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	585
BslI	CCNNNNNNNGG	2 cut(s)	163, 451
BsmI	GAATGC	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	372
BspACI	CCGC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	155, 168
BspMAI	CTGCAG	2 cut(s)	136, 475
BspPI	GGATC	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	372
BssNI	GRCGYC	1 cut(s)	690
Bst2UI	CCWGG	1 cut(s)	74
Bst6I	CTCTTC	2 cut(s)	55, 222
BstACI	GRCGYC	1 cut(s)	690
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	3 cut(s)	10, 441, 489
BstKTI	GATC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	72
BstSFI	CTRYAG	2 cut(s)	132, 471
BstV1I	GCAGC	6 cut(s)	118, 311, 314, 457, 485, 515
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	10, 441, 489
CaiI	CAGNNNCTG	1 cut(s)	305
CseI	GACGC	2 cut(s)	347, 698
Csp6I	GTAC	4 cut(s)	541, 637, 648, 707
CviAII	CATG	2 cut(s)	418, 548
CviQI	GTAC	4 cut(s)	541, 637, 648, 707
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	55, 222
EarI	CTCTTC	2 cut(s)	55, 222
Eco32I	GATATC	2 cut(s)	292, 699
Eco57I	CTGAAG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	72
EcoRV	GATATC	2 cut(s)	292, 699
EcoT22I	ATGCAT	1 cut(s)	560
FaeI	CATG	2 cut(s)	421, 551
FalI	AAGNNNNNCTT	6 cut(s)	105, 137, 371, 403, 617, 649
FatI	CATG	2 cut(s)	417, 547
FauNDI	CATATG	2 cut(s)	514, 554
Fnu4HI	GCNGC	6 cut(s)	132, 300, 303, 471, 474, 504
FokI	GGATG	3 cut(s)	17, 428, 496
Fsp4HI	GCNGC	6 cut(s)	132, 300, 303, 471, 474, 504
FspBI	CTAG	2 cut(s)	359, 609
GluI	GCNGC	6 cut(s)	132, 300, 303, 471, 474, 504
GsuI	CTGGAG	1 cut(s)	56
HapII	CCGG	1 cut(s)	585
HgaI	GACGC	2 cut(s)	347, 698
Hin1I	GRCGYC	1 cut(s)	690
Hin1II	CATG	2 cut(s)	421, 551
HinfI	GANTC	4 cut(s)	20, 147, 240, 721
HpaII	CCGG	1 cut(s)	585
Hpy166II	GTNNAC	1 cut(s)	674
Hpy188I	TCNGA	9 cut(s)	98, 166, 245, 368, 393, 400, 537, 624, 688
Hpy188III	TCNNGA	2 cut(s)	221, 445
Hpy8I	GTNNAC	1 cut(s)	674
HpyAV	CCTTC	2 cut(s)	76, 619
HpyCH4V	TGCA	6 cut(s)	134, 299, 417, 473, 503, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	690
Hsp92II	CATG	2 cut(s)	421, 551
Kzo9I	GATC	1 cut(s)	372
LmnI	GCTCC	2 cut(s)	75, 166
Lsp1109I	GCAGC	6 cut(s)	118, 311, 314, 457, 485, 515
LweI	GCATC	2 cut(s)	171, 474
MaeI	CTAG	2 cut(s)	359, 609
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	5 cut(s)	42, 91, 209, 299, 335
MflI	RGATCY	1 cut(s)	372
MluCI	AATT	2 cut(s)	333, 354
MlyI	GAGTC	2 cut(s)	14, 234
MnlI	CCTC	6 cut(s)	4, 58, 180, 274, 440, 487
Mph1103I	ATGCAT	1 cut(s)	560
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeI	CATATG	2 cut(s)	514, 554
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	2 cut(s)	421, 551
NlaIV	GGNNCC	2 cut(s)	155, 168
NsiI	ATGCAT	1 cut(s)	560
NspI	RCATGY	1 cut(s)	421
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	147, 721
PkrI	GCNGC	6 cut(s)	133, 301, 304, 472, 475, 505
PleI	GAGTC	2 cut(s)	14, 234
PpsI	GAGTC	2 cut(s)	14, 234
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	155, 168
PstI	CTGCAG	2 cut(s)	136, 475
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	372
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	4 cut(s)	542, 638, 649, 708
RsaNI	GTAC	4 cut(s)	541, 637, 648, 707
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	6 cut(s)	132, 300, 303, 471, 474, 504
Sau3AI	GATC	1 cut(s)	372
SchI	GAGTC	2 cut(s)	14, 234
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	9 cut(s)	50, 72, 123, 133, 307, 472, 508, 604, 614
SfaNI	GCATC	2 cut(s)	171, 474
SfcI	CTRYAG	2 cut(s)	132, 471
Sse9I	AATT	2 cut(s)	333, 354
SsiI	CCGC	1 cut(s)	59
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	2 cut(s)	359, 609
StyD4I	CCNGG	1 cut(s)	72
TasI	AATT	2 cut(s)	333, 354
TatI	WGTACW	1 cut(s)	636
TfiI	GAWTC	2 cut(s)	147, 721
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseI	GCWGC	6 cut(s)	131, 299, 302, 470, 473, 503
TspDTI	ATGAA	2 cut(s)	22, 27
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	1 cut(s)	421
XspI	CTAG	2 cut(s)	359, 609
Zsp2I	ATGCAT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.