Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Reverse (-)

29331920 .. 29333424

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCCGCCAAAACTGAAAGTGGTGGTGGTGGTGGTGGAAGGGAGGTGAAGAAGGTGCTTAATGCAGTGAATGACCATTACGGAGGTGTGATCGTCCACGTCACTGAGCCCATGGAGCCTGCTACCTTCGTATCCTCTCTTACCTCTTCAATTGCGCATTGGAAGCTGCAGGGAAAGAAGGGTATTTGGATCAAATTGCCAATAGAGCGAGTCAATCTTGTTGAAGCTGCGGTCAAGGAAGGATTCTGGTACCACCATGCAGAGCCTGATTATTTGATGCTTGTGTATTGGATTCCTCAGTCCCCTCATACTCTTCCCACAAATGCAACACACCGTGTCGGAATTGGTGCCTTTCTTATCAATCAAAACAGAGAGGTGCTACTAGTCCAAGAAAAGGGTGGACAATATCGTGGGACAGGTGTGTGGAAGCTCCCTACTGGAGCCGTTGATGAGGGAGAAGATATCTTTGCGGCTGCTGTCCGAGAAGTGAAGGAAGAAACAGGAGTAAGTAGTTTTCCGACTTACCATGTAGTGAGTGTATATATTAGATTATTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

187

Amino Acids

20.48

Weight (kDa)

6.71

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	156
Acc65I	GGTACC	1 cut(s)	249
AccB1I	GGYRCC	2 cut(s)	249, 347
AciI	CCGC	3 cut(s)	6, 230, 470
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	3
AdeI	CACNNNGTG	1 cut(s)	335
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	2 cut(s)	150, 224
AhlI	ACTAGT	1 cut(s)	382
AjiI	CACGTC	1 cut(s)	100
AluBI	AGCT	3 cut(s)	166, 227, 430
AluI	AGCT	3 cut(s)	166, 227, 430
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	166, 227, 473
AseI	ATTAAT	1 cut(s)	554
Asp718I	GGTACC	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	58
BaeI	ACNNNNGTAYC	2 cut(s)	114, 147
BanI	GGYRCC	2 cut(s)	249, 347
BanII	GRGCYC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	153, 214, 460
BceAI	ACGGC	1 cut(s)	428
BciVI	GTATCC	1 cut(s)	142
BcuI	ACTAGT	1 cut(s)	382
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	5 cut(s)	6, 167, 228, 471, 474
BlsI	GCNGC	5 cut(s)	7, 168, 229, 472, 475
BmgBI	CACGTC	1 cut(s)	100
BmiI	GGNNCC	4 cut(s)	117, 251, 349, 442
BmsI	GCATC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	442
BseDI	CCNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMII	CTCAG	2 cut(s)	96, 311
BseNI	ACTGG	1 cut(s)	442
BseXI	GCAGC	3 cut(s)	153, 214, 460
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	249, 347
BslFI	GGGAC	2 cut(s)	286, 427
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmFI	GGGAC	2 cut(s)	286, 427
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	90, 189
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	3 cut(s)	6, 230, 470
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	97, 310
BspLI	GGNNCC	4 cut(s)	117, 251, 349, 442
BspMAI	CTGCAG	1 cut(s)	171
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	2 cut(s)	249, 347
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	2 cut(s)	90, 189
BssT1I	CCWWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	2 cut(s)	151, 318
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	105, 297
BstDSI	CCRYGG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	2 cut(s)	93, 192
BstMBI	GATC	2 cut(s)	90, 189
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 163, 205
BstSFI	CTRYAG	1 cut(s)	167
BstV1I	GCAGC	3 cut(s)	153, 214, 460
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	111
BtrI	CACGTC	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	72, 102
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	266
CfoI	GCGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	3 cut(s)	112, 257, 527
CviJI	RGCY	9 cut(s)	5, 109, 118, 166, 227, 265, 430, 443, 473
CviKI_1	RGCY	9 cut(s)	5, 109, 118, 166, 227, 265, 430, 443, 473
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	2 cut(s)	105, 297
DpnI	GATC	2 cut(s)	92, 191
DpnII	GATC	2 cut(s)	90, 189
DraIII	CACNNNGTG	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	151, 318
EarI	CTCTTC	2 cut(s)	151, 318
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	463
EcoRV	GATATC	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	3 cut(s)	115, 260, 530
FaiI	YATR	6 cut(s)	113, 258, 309, 528, 541, 543
FaqI	GGGAC	2 cut(s)	286, 427
FatI	CATG	3 cut(s)	111, 256, 526
Fnu4HI	GCNGC	5 cut(s)	6, 167, 228, 471, 474
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	5 cut(s)	6, 167, 228, 471, 474
FspBI	CTAG	1 cut(s)	383
FspI	TGCGCA	1 cut(s)	156
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	5 cut(s)	6, 167, 228, 471, 474
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	3 cut(s)	115, 260, 530
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	3 cut(s)	210, 243, 292
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	97, 401
Hpy188I	TCNGA	3 cut(s)	341, 482, 519
Hpy8I	GTNNAC	2 cut(s)	97, 401
HpyAV	CCTTC	6 cut(s)	33, 46, 136, 172, 233, 484
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	4 cut(s)	65, 169, 260, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 163, 205
HpyF3I	CTNAG	2 cut(s)	105, 297
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	115, 260, 530
HspAI	GCGC	1 cut(s)	155
KpnI	GGTACC	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	90, 189
LmnI	GCTCC	3 cut(s)	115, 435, 440
LpnPI	CCDG	7 cut(s)	132, 155, 232, 279, 402, 423, 486
Lsp1109I	GCAGC	3 cut(s)	153, 214, 460
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	92, 191
MboI	GATC	2 cut(s)	90, 189
MboII	GAAGA	5 cut(s)	61, 138, 305, 470, 506
MfeI	CAATTG	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	3 cut(s)	150, 194, 342
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	2 cut(s)	319, 542
MnlI	CCTC	8 cut(s)	37, 77, 145, 154, 306, 315, 367, 445
MseI	TTAA	2 cut(s)	60, 554
MunI	CAATTG	1 cut(s)	150
MwoI	GCNNNNNNNGC	3 cut(s)	115, 163, 205
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	2 cut(s)	90, 189
NlaIII	CATG	3 cut(s)	115, 260, 530
NlaIV	GGNNCC	4 cut(s)	117, 251, 349, 442
NmuCI	GTSAC	1 cut(s)	100
NsbI	TGCGCA	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	243, 292
PkrI	GCNGC	5 cut(s)	7, 168, 229, 472, 475
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PshBI	ATTAAT	1 cut(s)	554
PspN4I	GGNNCC	4 cut(s)	117, 251, 349, 442
PstI	CTGCAG	1 cut(s)	171
PstNI	CAGNNNCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	60, 554
SatI	GCNGC	5 cut(s)	6, 167, 228, 471, 474
Sau3AI	GATC	2 cut(s)	90, 189
SchI	GAGTC	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	167
SpeI	ACTAGT	1 cut(s)	382
Sse9I	AATT	3 cut(s)	150, 194, 342
SsiI	CCGC	3 cut(s)	6, 230, 470
SspMI	CTAG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	102
TasI	AATT	3 cut(s)	150, 194, 342
TauI	GCSGC	2 cut(s)	8, 473
TfiI	GAWTC	2 cut(s)	243, 292
Tru1I	TTAA	2 cut(s)	60, 554
Tru9I	TTAA	2 cut(s)	60, 554
TscAI	CASTG	2 cut(s)	72, 109
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	3 cut(s)	166, 227, 473
Tsp45I	GTSAC	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	2 cut(s)	72, 109
VspI	ATTAAT	1 cut(s)	554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.