Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Forward (+)

267936 .. 270734

Gene Structure 2799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G004100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCCGGAGAAAGTGAAACAAGTGTGAGTACCGAAAGTGAGGCAAAGCGACTGGTCGGTACCAATGACCCGTACGGCGGCGTGATCGTCCACATCAATGAGCCTATGGACCCTGCTACCTTCCTTTCTCTCATTACCTCTTCAATTGCGCATTGGAAGCTACAGGGCAAGAAGGGTGTTTGGATCAAGTTGCCTTTAGATCGAGTCAATCTTGTCGAAGCAGCAGTGAAGGAAGGATTCTGGTACCACCATGCGGAGCCTGATTATTTGATGCTGGTGTATTGGATTCCTCAGACCCCTCATACCCTTCCTGCTAATGCCACCCACCGAGTAGGAATTGGCGCATTTGTCATCAACCCTAACAGAGAGGTGCTAGTAGTCCAAGAAAAGAGTGGACTGTTACGGGGGACAGGTGTATGGAAGTTTCCTACTGGAGTTGTAGATGAGGGAGAAGATATTGGTGCAGCCGCTGTGAGAGAAGTCAAAGAAGAAACGGGAATTGACTCGGAGTTTGTAGAAATTCTAGCATTCAGACAAAGCCACAAGTCATTTTTTGAGAAGTCGGATTTATTTTTTGTGTGCATGATGCAACCCCTCTCCTTTGACATCCAAAAGCATGATCAAGAGATAGAAGCAGCCCAGTGGATGGCATTTGAGGAATATGCAGCCCAACCATTTGTCCAGAAAAACGAGCTTCTAAACTACATCAACGACATCTGCAAAGCGAAGATAGATGGGCAGTATTCTGGATTTTCTCCAGTACCTACAATGAGTTTTTCTGATCAGAAGATGAGCTACTTGTACTTGAATGGTAAAGCAACCGAGAGAGACAGCAGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

281

Amino Acids

31.45

Weight (kDa)

5.15

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	150
Acc65I	GGTACC	2 cut(s)	59, 243
AccB1I	GGYRCC	2 cut(s)	59, 243
AccB7I	CCANNNNNTGG	1 cut(s)	646
AciI	CCGC	3 cut(s)	78, 254, 468
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	519
AfaI	GTAC	6 cut(s)	31, 61, 74, 245, 762, 803
AfiI	CCNNNNNNNGG	3 cut(s)	77, 253, 646
AgsI	TTSAA	2 cut(s)	144, 808
AluBI	AGCT	3 cut(s)	160, 694, 795
AluI	AGCT	3 cut(s)	160, 694, 795
Alw26I	GTCTC	1 cut(s)	822
AlwI	GGATC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	221, 464, 635, 665
ApoI	RAATTY	1 cut(s)	519
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
Asp718I	GGTACC	2 cut(s)	59, 243
AspLEI	GCGC	2 cut(s)	151, 344
AspS9I	GGNCC	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	109
BanI	GGYRCC	2 cut(s)	59, 243
BarI	GAAGNNNNNNTAC	2 cut(s)	779, 811
BbvI	GCAGC	4 cut(s)	233, 476, 647, 677
BccI	CCATC	2 cut(s)	640, 728
BceAI	ACGGC	1 cut(s)	91
BclI	TGATCA	2 cut(s)	619, 781
BcoDI	GTCTC	1 cut(s)	822
BfaI	CTAG	2 cut(s)	374, 524
BfmI	CTRYAG	1 cut(s)	161
BisI	GCNGC	6 cut(s)	79, 222, 465, 468, 636, 666
BlsI	GCNGC	6 cut(s)	80, 223, 466, 469, 637, 667
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	4 cut(s)	61, 111, 245, 258
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	2 cut(s)	261, 576
BmuI	ACTGGG	1 cut(s)	634
BpmI	CTGGAG	2 cut(s)	453, 741
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 253, 646
Bse1I	ACTGG	4 cut(s)	57, 436, 640, 758
BseGI	GGATG	2 cut(s)	606, 651
BseLI	CCNNNNNNNGG	3 cut(s)	77, 253, 646
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	4 cut(s)	57, 436, 640, 758
BseXI	GCAGC	4 cut(s)	233, 476, 647, 677
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	59, 243
BsiSI	CCGG	1 cut(s)	6
BsiWI	CGTACG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	3 cut(s)	77, 253, 646
BsmAI	GTCTC	1 cut(s)	822
BsmFI	GGGAC	1 cut(s)	421
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	5 cut(s)	84, 183, 199, 619, 781
BspACI	CCGC	3 cut(s)	78, 254, 468
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	4 cut(s)	61, 111, 245, 258
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	2 cut(s)	59, 243
BsrI	ACTGG	4 cut(s)	57, 436, 640, 758
BssMI	GATC	5 cut(s)	84, 183, 199, 619, 781
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	606, 651
BstHHI	GCGC	2 cut(s)	151, 344
BstKTI	GATC	5 cut(s)	87, 186, 202, 622, 784
BstMAI	GTCTC	1 cut(s)	822
BstMBI	GATC	5 cut(s)	84, 183, 199, 619, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	161
BstV1I	GCAGC	4 cut(s)	233, 476, 647, 677
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	606, 651
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	231, 647
CaiI	CAGNNNCTG	1 cut(s)	470
CfoI	GCGC	2 cut(s)	151, 344
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	6 cut(s)	30, 60, 73, 244, 761, 802
CviAII	CATG	3 cut(s)	251, 583, 617
CviQI	GTAC	6 cut(s)	30, 60, 73, 244, 761, 802
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	5 cut(s)	86, 185, 201, 621, 783
DpnII	GATC	5 cut(s)	84, 183, 199, 619, 781
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	109
FaeI	CATG	3 cut(s)	254, 586, 620
FaiI	YATR	7 cut(s)	107, 252, 303, 418, 584, 618, 663
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	3 cut(s)	250, 582, 616
FbaI	TGATCA	2 cut(s)	619, 781
Fnu4HI	GCNGC	6 cut(s)	79, 222, 465, 468, 636, 666
FokI	GGATG	2 cut(s)	593, 658
Fsp4HI	GCNGC	6 cut(s)	79, 222, 465, 468, 636, 666
FspBI	CTAG	2 cut(s)	374, 524
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	2 cut(s)	150, 343
GluI	GCNGC	6 cut(s)	79, 222, 465, 468, 636, 666
GsuI	CTGGAG	2 cut(s)	453, 741
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	2 cut(s)	151, 344
Hin1II	CATG	3 cut(s)	254, 586, 620
Hin6I	GCGC	2 cut(s)	149, 342
HinP1I	GCGC	2 cut(s)	149, 342
HinfI	GANTC	4 cut(s)	204, 237, 286, 503
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	91, 395
Hpy188I	TCNGA	6 cut(s)	294, 508, 533, 565, 781, 786
Hpy188III	TCNNGA	3 cut(s)	623, 682, 747
Hpy8I	GTNNAC	2 cut(s)	91, 395
HpyAV	CCTTC	5 cut(s)	130, 166, 223, 227, 317
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4V	TGCA	5 cut(s)	464, 582, 589, 665, 720
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	254, 586, 620
HspAI	GCGC	2 cut(s)	149, 342
KpnI	GGTACC	2 cut(s)	63, 247
Ksp22I	TGATCA	2 cut(s)	619, 781
Kzo9I	GATC	5 cut(s)	84, 183, 199, 619, 781
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	4 cut(s)	233, 476, 647, 677
LweI	GCATC	2 cut(s)	261, 576
MaeI	CTAG	2 cut(s)	374, 524
MaeIII	GTNAC	1 cut(s)	399
MalI	GATC	5 cut(s)	86, 185, 201, 621, 783
MboI	GATC	5 cut(s)	84, 183, 199, 619, 781
MboII	GAAGA	5 cut(s)	132, 464, 500, 739, 799
MfeI	CAATTG	1 cut(s)	144
MluCI	AATT	4 cut(s)	144, 336, 498, 519
MlyI	GAGTC	2 cut(s)	213, 497
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	9 cut(s)	34, 148, 300, 309, 361, 439, 605, 649, 830
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	527
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	5 cut(s)	84, 183, 199, 619, 781
NlaIII	CATG	3 cut(s)	254, 586, 620
NlaIV	GGNNCC	4 cut(s)	61, 111, 245, 258
NsbI	TGCGCA	1 cut(s)	150
PctI	GAATGC	1 cut(s)	527
PfeI	GAWTC	2 cut(s)	237, 286
Pfl23II	CGTACG	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	646
PkrI	GCNGC	6 cut(s)	80, 223, 466, 469, 637, 667
PleI	GAGTC	2 cut(s)	212, 497
PpsI	GAGTC	2 cut(s)	212, 497
PspLI	CGTACG	1 cut(s)	72
PspN4I	GGNNCC	4 cut(s)	61, 111, 245, 258
PspPI	GGNCC	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	470
RsaI	GTAC	6 cut(s)	31, 61, 74, 245, 762, 803
RsaNI	GTAC	6 cut(s)	30, 60, 73, 244, 761, 802
RseI	CAYNNNNRTG	1 cut(s)	96
SatI	GCNGC	6 cut(s)	79, 222, 465, 468, 636, 666
Sau3AI	GATC	5 cut(s)	84, 183, 199, 619, 781
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	2 cut(s)	213, 497
SetI	ASST	9 cut(s)	122, 140, 162, 372, 415, 696, 766, 797, 841
SfaNI	GCATC	2 cut(s)	261, 576
SfcI	CTRYAG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	4 cut(s)	144, 336, 498, 519
SsiI	CCGC	3 cut(s)	78, 254, 468
SspMI	CTAG	2 cut(s)	374, 524
TaaI	ACNGT	1 cut(s)	399
TaqI	TCGA	2 cut(s)	202, 216
TasI	AATT	4 cut(s)	144, 336, 498, 519
TatI	WGTACW	1 cut(s)	801
TauI	GCSGC	2 cut(s)	81, 470
TfiI	GAWTC	2 cut(s)	237, 286
TscAI	CASTG	2 cut(s)	231, 647
TseI	GCWGC	4 cut(s)	221, 464, 635, 665
TspRI	CASTG	2 cut(s)	231, 647
Van91I	CCANNNNNTGG	1 cut(s)	646
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	1 cut(s)	519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XspI	CTAG	2 cut(s)	374, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.