Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Forward (+)

265113 .. 267274

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G004000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGATGAGCATAGACCCTGCTACCTTTTTATTATCTCTGACCTCCTCAATTGAGCATTGGAAGGTGCAGGGAAAGAAGGGTGTTTGGATCAAATTGCCTATAGAGCGAGTCAATCTTATAGAAGCTGCAGTCAAGAAAGGATTCTGGTACCACCATGCGGAGCCTAATTATTTGATGCTCATGTTTTGGATTCCTCAATCCGCTCATACTCTTCCTGCAAATGCCACGCACCGAGTGGGCATTGGCGCATTTCTCATCAATCATAACAGAGAGTATCGAGGGACGGGTGTGTGGAAGCTCCCTACTGGAGTTGTTGATGAGGGAGAAGATATCTTTGCAGCTGCTGTTAGAGAAGTCAAAGAAGAAACAGGAATTGACTCAGAGTTTGTGGAAGTTCTAGCATTCAGACAACGTCACAAGTCGTTCTTTCAGAAGTCAGATTTATTTTTTGTGTGCATGTTACGACCCCTCTCCTTTGACATCCAGAAGCAGGAACACGAGATAGAAGCAGCCAAGTGGATGCCATTTGAGGAATATGCAGCTCAACCATTTGTCCAGAAATACGAGCTTCTGAGCTACATCCATGACATATGCAAAGCAAAGATGGATGGGAAGTATACTGGATTTTCTCCAGTGCCCTCTACAAGTTATTCTGTTCAGAAGAGCTACTTGTACTTGAATACTAGCACGGCACCCAGGAGACAGAGTAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

240

Amino Acids

27.58

Weight (kDa)

7.79

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	150
AccB1I	GGYRCC	2 cut(s)	150, 694
AccBSI	CCGCTC	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	620
AciI	CCGC	2 cut(s)	161, 204
AclWI	GGATC	1 cut(s)	98
AdeI	CACNNNGTG	1 cut(s)	238
AfaI	GTAC	2 cut(s)	152, 677
AfiI	CCNNNNNNNGG	2 cut(s)	160, 493
AgsI	TTSAA	1 cut(s)	682
AjnI	CCWGG	1 cut(s)	698
AluBI	AGCT	7 cut(s)	128, 301, 344, 545, 571, 579, 669
AluI	AGCT	7 cut(s)	128, 301, 344, 545, 571, 579, 669
Alw26I	GTCTC	1 cut(s)	697
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	347
ApeKI	GCWGC	5 cut(s)	128, 341, 344, 512, 542
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
Asp700I	GAANNNNTTC	1 cut(s)	143
Asp718I	GGTACC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	642
BanI	GGYRCC	2 cut(s)	150, 694
BauI	CACGAG	1 cut(s)	500
BbvI	GCAGC	5 cut(s)	115, 331, 353, 524, 554
BccI	CCATC	2 cut(s)	601, 605
BceAI	ACGGC	1 cut(s)	708
BciT130I	CCWGG	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	697
BfaI	CTAG	2 cut(s)	401, 687
BfmI	CTRYAG	2 cut(s)	102, 129
BisI	GCNGC	5 cut(s)	129, 342, 345, 513, 543
BlsI	GCNGC	5 cut(s)	130, 343, 346, 514, 544
Bme1390I	CCNGG	1 cut(s)	700
BmiI	GGNNCC	3 cut(s)	152, 165, 696
BmrFI	CCNGG	1 cut(s)	700
BmsI	GCATC	2 cut(s)	168, 513
BpmI	CTGGAG	2 cut(s)	330, 618
BsaJI	CCNNGG	1 cut(s)	698
BsaXI	ACNNNNNCTCC	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 493
Bse1I	ACTGG	3 cut(s)	313, 628, 635
BseBI	CCWGG	1 cut(s)	700
BseDI	CCNNGG	1 cut(s)	698
BseGI	GGATG	4 cut(s)	483, 528, 582, 616
BseLI	CCNNNNNNNGG	2 cut(s)	160, 493
BseMII	CTCAG	2 cut(s)	396, 566
BseNI	ACTGG	3 cut(s)	313, 628, 635
BseRI	GAGGAG	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	642
BseXI	GCAGC	5 cut(s)	115, 331, 353, 524, 554
BsgI	GTGCAG	1 cut(s)	89
BshNI	GGYRCC	2 cut(s)	150, 694
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	160, 493
BsmAI	GTCTC	1 cut(s)	697
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	2 cut(s)	161, 204
BspCNI	CTCAG	2 cut(s)	395, 567
BspLI	GGNNCC	3 cut(s)	152, 165, 696
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	98
BspQI	GCTCTTC	1 cut(s)	659
BspT107I	GGYRCC	2 cut(s)	150, 694
BsrBI	CCGCTC	1 cut(s)	206
BsrI	ACTGG	3 cut(s)	313, 628, 635
BssECI	CCNNGG	1 cut(s)	698
BssMI	GATC	1 cut(s)	90
BssNAI	GTATAC	1 cut(s)	621
BssSI	CACGAG	1 cut(s)	500
Bst1107I	GTATAC	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	700
Bst6I	CTCTTC	2 cut(s)	219, 659
BstDEI	CTNAG	2 cut(s)	382, 575
BstF5I	GGATG	4 cut(s)	483, 528, 582, 616
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	697
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	700
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	698
BstSFI	CTRYAG	2 cut(s)	102, 129
BstSLI	GKGCMC	1 cut(s)	642
BstV1I	GCAGC	5 cut(s)	115, 331, 353, 524, 554
BstZ17I	GTATAC	1 cut(s)	621
BtsCI	GGATG	4 cut(s)	483, 528, 582, 616
BtsIMutI	CAGTG	1 cut(s)	642
CaiI	CAGNNNCTG	1 cut(s)	347
CfoI	GCGC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	151, 676
CviAII	CATG	4 cut(s)	158, 184, 460, 587
CviJI	RGCY	9 cut(s)	128, 166, 301, 344, 515, 545, 571, 579, 669
CviKI_1	RGCY	9 cut(s)	128, 166, 301, 344, 515, 545, 571, 579, 669
CviQI	GTAC	2 cut(s)	151, 676
DdeI	CTNAG	2 cut(s)	382, 575
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
DraIII	CACNNNGTG	1 cut(s)	238
Eam1104I	CTCTTC	2 cut(s)	219, 659
EarI	CTCTTC	2 cut(s)	219, 659
Eco32I	GATATC	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	698
EcoRV	GATATC	1 cut(s)	334
FaeI	CATG	4 cut(s)	161, 187, 463, 590
FalI	AAGNNNNNCTT	4 cut(s)	413, 445, 656, 688
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	4 cut(s)	157, 183, 459, 586
FauNDI	CATATG	1 cut(s)	593
FblI	GTMKAC	1 cut(s)	620
Fnu4HI	GCNGC	5 cut(s)	129, 342, 345, 513, 543
FokI	GGATG	4 cut(s)	470, 535, 569, 623
Fsp4HI	GCNGC	5 cut(s)	129, 342, 345, 513, 543
FspBI	CTAG	2 cut(s)	401, 687
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	5 cut(s)	129, 342, 345, 513, 543
GsuI	CTGGAG	2 cut(s)	330, 618
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	4 cut(s)	161, 187, 463, 590
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HinfI	GANTC	4 cut(s)	111, 144, 193, 380
Hpy166II	GTNNAC	2 cut(s)	621, 713
Hpy188I	TCNGA	8 cut(s)	42, 385, 410, 435, 442, 576, 663, 719
Hpy188III	TCNNGA	3 cut(s)	136, 487, 559
Hpy8I	GTNNAC	2 cut(s)	621, 713
HpyAV	CCTTC	2 cut(s)	58, 73
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	7 cut(s)	70, 131, 221, 341, 459, 542, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	2 cut(s)	382, 575
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	4 cut(s)	161, 187, 463, 590
HspAI	GCGC	1 cut(s)	249
KpnI	GGTACC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	90
LguI	GCTCTTC	1 cut(s)	659
LmnI	GCTCC	2 cut(s)	163, 306
Lsp1109I	GCAGC	5 cut(s)	115, 331, 353, 524, 554
LweI	GCATC	2 cut(s)	168, 513
MaeI	CTAG	2 cut(s)	401, 687
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	2 cut(s)	416, 462
MalI	GATC	1 cut(s)	92
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	1 cut(s)	90
MboII	GAAGA	4 cut(s)	206, 341, 377, 676
MfeI	CAATTG	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	642
MluCI	AATT	4 cut(s)	51, 95, 169, 375
MlyI	GAGTC	2 cut(s)	120, 374
MnlI	CCTC	8 cut(s)	55, 58, 207, 275, 316, 482, 526, 652
MroXI	GAANNNNTTC	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	700
MunI	CAATTG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	700
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeI	CATATG	1 cut(s)	593
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	4 cut(s)	161, 187, 463, 590
NlaIV	GGNNCC	3 cut(s)	152, 165, 696
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	463
PciSI	GCTCTTC	1 cut(s)	659
PctI	GAATGC	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	144, 193
PflFI	GACNNNGTC	1 cut(s)	414
PkrI	GCNGC	5 cut(s)	130, 343, 346, 514, 544
PleI	GAGTC	2 cut(s)	119, 374
PpsI	GAGTC	2 cut(s)	119, 374
Psp6I	CCWGG	1 cut(s)	698
PspGI	CCWGG	1 cut(s)	698
PspN4I	GGNNCC	3 cut(s)	152, 165, 696
PstI	CTGCAG	1 cut(s)	133
PstNI	CAGNNNCTG	1 cut(s)	347
PsyI	GACNNNGTC	1 cut(s)	414
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	2 cut(s)	152, 677
RsaNI	GTAC	2 cut(s)	151, 676
SapI	GCTCTTC	1 cut(s)	659
SatI	GCNGC	5 cut(s)	129, 342, 345, 513, 543
Sau3AI	GATC	1 cut(s)	90
SchI	GAGTC	2 cut(s)	120, 374
ScrFI	CCNGG	1 cut(s)	700
SduI	GDGCHC	1 cut(s)	642
SfaNI	GCATC	2 cut(s)	168, 513
SfcI	CTRYAG	2 cut(s)	102, 129
Sse9I	AATT	4 cut(s)	51, 95, 169, 375
SsiI	CCGC	2 cut(s)	161, 204
SspMI	CTAG	2 cut(s)	401, 687
StyD4I	CCNGG	1 cut(s)	698
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	1 cut(s)	280
TasI	AATT	4 cut(s)	51, 95, 169, 375
TatI	WGTACW	1 cut(s)	675
TfiI	GAWTC	2 cut(s)	144, 193
TscAI	CASTG	1 cut(s)	642
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	5 cut(s)	128, 341, 344, 512, 542
Tsp45I	GTSAC	1 cut(s)	416
TspRI	CASTG	1 cut(s)	642
Tth111I	GACNNNGTC	1 cut(s)	414
XceI	RCATGY	1 cut(s)	463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	2 cut(s)	401, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.