Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Reverse (-)

96314490 .. 96317160

Gene Structure 2671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCCGCTAAAGCTGAAAGTAGTGATGAGAGTGGGGTGAAGCTACTCAGTGGTATCAATGACCAGTACGGAGGTGTCATCGTCGACATTATCGATCCCATCGACCCTGCCTCCTTCCTTTCATTTCTTACGTCTTCAATTGCACATTGGAAACTTGAGGGCAAGAAGGGTATTTGGATCAAATTGCCCATCCAGCGAGTCAATCTTGTTGAACCTGCAGTGATGGTCAACCTCCTCCTCCTCCTCCTATTCATCATTAAAGGATTCTGGTATCACCACGCAGAGCCTACTTATTTGATGCTGGTAAATTGGATTCCTCCTTCCCCTCATACTCTTCCAGCAAATGCTTCCCACCGAGTCGGAATTGGTGCATTTCTCCTCAATCAAAACCGAGAGGTGCTCGTAGTCCAAGAAAAGAGCGGAAAGTTCGAGGGTACAGGTGTGTGGAAATTCCCTACAGGAGTTGTCGATGAGGGAGAAGATATCTATGCAGCTGCTGTGAGAGAAGTAAAAGAAGAAACTGGAATTGACTCAGAGTTTGTGGAAGTCCTAGCGTTCAGACAAAGCCACAAGTCATTTTTTGAGAAATCAGATTTATTTTTTGTATGCATATTGCAAGCCCTTTCCTTTGACATCCAGAAGCAAGAACAAGAGATAGAAGCAGCCCAGTGGATGCCATTTGAAGAATATGCTGCCCAACCCTTTCTCCAGAACAATGAGCTTCTAAAGTACATCAATGAAATATGCAAGGCAAAAATGGAGCGGGAGTACTCTGGATTTTGTCCGGTAACTACAACTAGTTCTTCTGATGAGAAGAGCTACTTGTACTTGAATACCAAAGAGAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

283

Amino Acids

32.05

Weight (kDa)

5.11

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	16 - 105	4.2e-22	Nudix hydrolase domain
NUDIX	PF00293	118 - 234	1e-26	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AccBSI	CCGCTC	2 cut(s)	420, 763
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	3 cut(s)	6, 420, 763
AclWI	GGATC	2 cut(s)	89, 185
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	449
AfaI	GTAC	5 cut(s)	68, 436, 731, 770, 827
AgsI	TTSAA	4 cut(s)	138, 212, 683, 832
AhlI	ACTAGT	1 cut(s)	797
AluBI	AGCT	5 cut(s)	14, 43, 494, 721, 819
AluI	AGCT	5 cut(s)	14, 43, 494, 721, 819
Alw21I	GWGCWC	1 cut(s)	402
AlwI	GGATC	2 cut(s)	89, 185
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	491, 494, 662, 692
ApoI	RAATTY	1 cut(s)	449
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
AsuHPI	GGTGA	2 cut(s)	49, 266
BaeI	ACNNNNGTAYC	2 cut(s)	426, 459
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	4 cut(s)	481, 503, 674, 679
BccI	CCATC	3 cut(s)	107, 197, 217
BcuI	ACTAGT	1 cut(s)	797
BfaI	CTAG	2 cut(s)	551, 798
BfmI	CTRYAG	2 cut(s)	216, 456
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	5 cut(s)	6, 492, 495, 663, 693
BlsI	GCNGC	5 cut(s)	7, 493, 496, 664, 694
BmcAI	AGTACT	1 cut(s)	770
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	2 cut(s)	288, 663
BmuI	ACTGGG	1 cut(s)	661
BpiI	GAAGAC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	384, 416
BpmI	CTGGAG	1 cut(s)	692
BpuEI	CTTGAG	1 cut(s)	176
Bsa29I	ATCGAT	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	784
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 690, 720, 752, 782
Bse1I	ACTGG	3 cut(s)	64, 526, 667
BseCI	ATCGAT	1 cut(s)	93
BseGI	GGATG	3 cut(s)	189, 633, 678
BseMII	CTCAG	2 cut(s)	61, 546
BseNI	ACTGG	3 cut(s)	64, 526, 667
BseRI	GAGGAG	5 cut(s)	224, 227, 230, 233, 368
BseXI	GCAGC	4 cut(s)	481, 503, 674, 679
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	785
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	2 cut(s)	94, 177
BspACI	CCGC	3 cut(s)	6, 420, 763
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	60, 545
BspDI	ATCGAT	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	89, 185
BspQI	GCTCTTC	1 cut(s)	809
BsrBI	CCGCTC	2 cut(s)	420, 763
BsrI	ACTGG	3 cut(s)	64, 526, 667
BssMI	GATC	2 cut(s)	94, 177
Bst6I	CTCTTC	2 cut(s)	339, 809
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	2 cut(s)	47, 532
BstF5I	GGATG	3 cut(s)	189, 633, 678
BstKTI	GATC	2 cut(s)	97, 180
BstMBI	GATC	2 cut(s)	94, 177
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 193
BstSFI	CTRYAG	2 cut(s)	216, 456
BstV1I	GCAGC	4 cut(s)	481, 503, 674, 679
BstV2I	GAAGAC	1 cut(s)	126
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	3 cut(s)	189, 633, 678
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	3 cut(s)	55, 225, 674
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	618
CaiI	CAGNNNCTG	1 cut(s)	497
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	5 cut(s)	67, 435, 730, 769, 826
CviQI	GTAC	5 cut(s)	67, 435, 730, 769, 826
DdeI	CTNAG	2 cut(s)	47, 532
DpnI	GATC	2 cut(s)	96, 179
DpnII	GATC	2 cut(s)	94, 177
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	339, 809
EarI	CTCTTC	2 cut(s)	339, 809
Eco32I	GATATC	1 cut(s)	484
EcoRV	GATATC	1 cut(s)	484
EcoT22I	ATGCAT	1 cut(s)	611
FaiI	YATR	6 cut(s)	330, 489, 607, 611, 690, 745
FalI	AAGNNNNNCTT	2 cut(s)	806, 838
FauI	CCCGC	1 cut(s)	756
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	5 cut(s)	6, 492, 495, 663, 693
FokI	GGATG	3 cut(s)	176, 620, 685
Fsp4HI	GCNGC	5 cut(s)	6, 492, 495, 663, 693
FspBI	CTAG	2 cut(s)	551, 798
GluI	GCNGC	5 cut(s)	6, 492, 495, 663, 693
GsuI	CTGGAG	1 cut(s)	692
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	785
HincII	GTYRAC	2 cut(s)	85, 229
HindII	GTYRAC	2 cut(s)	85, 229
HinfI	GANTC	5 cut(s)	198, 264, 313, 357, 530
HpaII	CCGG	1 cut(s)	785
HphI	GGTGA	2 cut(s)	49, 266
Hpy166II	GTNNAC	2 cut(s)	85, 229
Hpy188I	TCNGA	5 cut(s)	362, 535, 560, 592, 808
Hpy188III	TCNNGA	3 cut(s)	637, 709, 774
Hpy8I	GTNNAC	2 cut(s)	85, 229
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	124, 160, 330
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	7 cut(s)	143, 218, 371, 491, 609, 616, 747
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 193
HpyF3I	CTNAG	2 cut(s)	47, 532
HpySE526I	ACGT	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	94, 177
LguI	GCTCTTC	1 cut(s)	809
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	4 cut(s)	481, 503, 674, 679
LweI	GCATC	2 cut(s)	288, 663
MaeI	CTAG	2 cut(s)	551, 798
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	787
MalI	GATC	2 cut(s)	96, 179
MbiI	CCGCTC	2 cut(s)	420, 763
MboI	GATC	2 cut(s)	94, 177
MboII	GAAGA	7 cut(s)	126, 326, 491, 527, 695, 795, 826
MfeI	CAATTG	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	6 cut(s)	138, 182, 307, 363, 449, 525
MlyI	GAGTC	3 cut(s)	207, 366, 524
MmeI	TCCRAC	1 cut(s)	340
Mph1103I	ATGCAT	1 cut(s)	611
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	785
MunI	CAATTG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	11, 193
NdeII	GATC	2 cut(s)	94, 177
NsiI	ATGCAT	1 cut(s)	611
PciSI	GCTCTTC	1 cut(s)	809
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 99
PfeI	GAWTC	2 cut(s)	264, 313
PkrI	GCNGC	5 cut(s)	7, 493, 496, 664, 694
PleI	GAGTC	3 cut(s)	206, 365, 524
PpsI	GAGTC	3 cut(s)	206, 365, 524
PstI	CTGCAG	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	497
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	5 cut(s)	68, 436, 731, 770, 827
RsaNI	GTAC	5 cut(s)	67, 435, 730, 769, 826
SalI	GTCGAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	809
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	5 cut(s)	6, 492, 495, 663, 693
Sau3AI	GATC	2 cut(s)	94, 177
ScaI	AGTACT	1 cut(s)	770
SchI	GAGTC	3 cut(s)	207, 366, 524
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	2 cut(s)	288, 663
SfcI	CTRYAG	2 cut(s)	216, 456
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SpeI	ACTAGT	1 cut(s)	797
Sse9I	AATT	6 cut(s)	138, 182, 307, 363, 449, 525
SsiI	CCGC	3 cut(s)	6, 420, 763
SspMI	CTAG	2 cut(s)	551, 798
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	5 cut(s)	84, 93, 102, 429, 468
TasI	AATT	6 cut(s)	138, 182, 307, 363, 449, 525
TatI	WGTACW	3 cut(s)	729, 768, 825
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	264, 313
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	3 cut(s)	55, 225, 674
TseI	GCWGC	4 cut(s)	491, 494, 662, 692
TspDTI	ATGAA	3 cut(s)	111, 241, 753
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	3 cut(s)	55, 225, 674
XapI	RAATTY	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	2 cut(s)	551, 798
ZrmI	AGTACT	1 cut(s)	770
Zsp2I	ATGCAT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.