Nudix hydrolase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650 |
| fragaria_vesca | FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 |
| malus_domestica | MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1 |
| prunus_persica | Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1 |
| pyrus_communis | pycom10g28840 |
| rosa_chinensis | RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551 |
| rosa_laevigata | RLG00000030874 RLG00000030875 |
| rosa_multiflora | Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00075650 Rroxscaffold_1G00075660 |
| rosa_rugosa | Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800 |
| rosa_samantha | Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900 |
| rosa_wichuraiana | Rw5G000440 Rw5G000450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 759 |
| AarI | CACCTGC | 1 cut(s) | 1825 |
| Acc36I | ACCTGC | 1 cut(s) | 1825 |
| AccB1I | GGYRCC | 5 cut(s) | 77, 311, 362, 1507, 1736 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2003 |
| AccBSI | CCGCTC | 1 cut(s) | 2380 |
| AccI | GTMKAC | 2 cut(s) | 222, 662 |
| AccII | CGCG | 2 cut(s) | 186, 434 |
| AclWI | GGATC | 3 cut(s) | 62, 75, 692 |
| AcsI | RAATTY | 2 cut(s) | 1469, 1791 |
| AcvI | CACGTG | 1 cut(s) | 413 |
| AcyI | GRCGYC | 1 cut(s) | 312 |
| AfaI | GTAC | 7 cut(s) | 209, 713, 896, 944, 1780, 1849, 1908 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 87, 295, 402, 433, 588, 1823, 2003 |
| AflIII | ACRYGT | 1 cut(s) | 1695 |
| AgsI | TTSAA | 7 cut(s) | 1036, 1066, 1280, 1462, 1644, 1950, 2420 |
| AjnI | CCWGG | 3 cut(s) | 192, 398, 1526 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1620, 1652 |
| Alw21I | GWGCWC | 1 cut(s) | 1606 |
| Alw26I | GTCTC | 5 cut(s) | 168, 1389, 1766, 1875, 1919 |
| AlwI | GGATC | 3 cut(s) | 62, 75, 692 |
| AoxI | GGCC | 7 cut(s) | 3, 485, 576, 1039, 1524, 1646, 1831 |
| ApeKI | GCWGC | 7 cut(s) | 862, 865, 1145, 1448, 1674, 1690, 2090 |
| ApoI | RAATTY | 2 cut(s) | 1469, 1791 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1218 |
| AspLEI | GCGC | 3 cut(s) | 186, 314, 1176 |
| AsuC2I | CCSGG | 1 cut(s) | 514 |
| AsuHPI | GGTGA | 6 cut(s) | 461, 532, 679, 860, 1142, 1806 |
| AvaII | GGWCC | 8 cut(s) | 90, 393, 528, 1069, 1161, 1493, 1539, 2079 |
| BamHI | GGATCC | 1 cut(s) | 67 |
| BanI | GGYRCC | 5 cut(s) | 77, 311, 362, 1507, 1736 |
| BanII | GRGCYC | 2 cut(s) | 1261, 1606 |
| BauI | CACGAG | 1 cut(s) | 1388 |
| BbrPI | CACGTG | 1 cut(s) | 413 |
| BbsI | GAAGAC | 3 cut(s) | 252, 261, 1593 |
| Bbv12I | GWGCWC | 1 cut(s) | 1606 |
| BbvCI | CCTCAGC | 1 cut(s) | 1287 |
| BbvI | GCAGC | 7 cut(s) | 849, 877, 1157, 1460, 1686, 1702, 2102 |
| BccI | CCATC | 4 cut(s) | 586, 931, 1198, 1232 |
| BceAI | ACGGC | 3 cut(s) | 157, 364, 469 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 352, 386 |
| BciT130I | CCWGG | 3 cut(s) | 194, 400, 1528 |
| BcnI | CCSGG | 1 cut(s) | 514 |
| BcoDI | GTCTC | 5 cut(s) | 168, 1389, 1766, 1875, 1919 |
| BfaI | CTAG | 2 cut(s) | 765, 1652 |
| BfmI | CTRYAG | 4 cut(s) | 863, 1446, 2205, 2216 |
| BfoI | RGCGCY | 1 cut(s) | 315 |
| BfuAI | ACCTGC | 1 cut(s) | 1825 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 437 |
| BglII | AGATCT | 1 cut(s) | 1304 |
| BmcAI | AGTACT | 1 cut(s) | 944 |
| Bme1390I | CCNGG | 4 cut(s) | 194, 400, 514, 1528 |
| Bme18I | GGWCC | 8 cut(s) | 90, 393, 528, 1069, 1161, 1493, 1539, 2079 |
| BmrFI | CCNGG | 4 cut(s) | 194, 400, 514, 1528 |
| BmrI | ACTGGG | 1 cut(s) | 427 |
| BmsI | GCATC | 8 cut(s) | 451, 849, 979, 1324, 1350, 2200, 2227, 2265 |
| BmuI | ACTGGG | 1 cut(s) | 427 |
| BpiI | GAAGAC | 3 cut(s) | 252, 261, 1593 |
| BpmI | CTGGAG | 2 cut(s) | 1194, 1557 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1287 |
| BpuEI | CTTGAG | 4 cut(s) | 801, 1367, 1385, 1996 |
| BpuMI | CCSGG | 1 cut(s) | 514 |
| BsaAI | YACGTR | 1 cut(s) | 413 |
| BsaHI | GRCGYC | 1 cut(s) | 312 |
| BsaI | GGTCTC | 3 cut(s) | 168, 1389, 1919 |
| BsaJI | CCNNGG | 7 cut(s) | 139, 294, 432, 910, 984, 1430, 1511 |
| BsaWI | WCCGGW | 1 cut(s) | 676 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 107, 137, 815, 845, 1620, 1650 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 87, 295, 402, 433, 588, 1823, 2003 |
| Bse118I | RCCGGY | 2 cut(s) | 74, 177 |
| Bse1I | ACTGG | 5 cut(s) | 422, 666, 1780, 2203, 2236 |
| Bse3DI | GCAATG | 3 cut(s) | 875, 1509, 2142 |
| BseBI | CCWGG | 3 cut(s) | 194, 400, 1528 |
| BseDI | CCNNGG | 7 cut(s) | 139, 294, 432, 910, 984, 1430, 1511 |
| BseGI | GGATG | 6 cut(s) | 597, 877, 994, 1209, 1255, 1315 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 87, 295, 402, 433, 588, 1823, 2003 |
| BseMI | GCAATG | 3 cut(s) | 875, 1509, 2142 |
| BseMII | CTCAG | 6 cut(s) | 71, 1278, 1443, 1911, 1956, 2414 |
| BseNI | ACTGG | 5 cut(s) | 422, 666, 1780, 2203, 2236 |
| BseRI | GAGGAG | 5 cut(s) | 253, 269, 538, 650, 1013 |
| BseXI | GCAGC | 7 cut(s) | 849, 877, 1157, 1460, 1686, 1702, 2102 |
| Bsh1236I | CGCG | 2 cut(s) | 186, 434 |
| Bsh1285I | CGRYCG | 3 cut(s) | 75, 172, 385 |
| BshFI | GGCC | 7 cut(s) | 5, 487, 578, 1041, 1526, 1648, 1833 |
| BshNI | GGYRCC | 5 cut(s) | 77, 311, 362, 1507, 1736 |
| BsiEI | CGRYCG | 3 cut(s) | 75, 172, 385 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1606 |
| BsiSI | CCGG | 7 cut(s) | 75, 88, 178, 513, 582, 677, 2047 |
| BsiWI | CGTACG | 1 cut(s) | 207 |
| BslFI | GGGAC | 6 cut(s) | 529, 782, 1204, 1305, 1479, 2268 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 87, 295, 402, 433, 588, 1823, 2003 |
| BsmAI | GTCTC | 5 cut(s) | 168, 1389, 1766, 1875, 1919 |
| BsmBI | CGTCTC | 1 cut(s) | 1875 |
| BsmFI | GGGAC | 6 cut(s) | 529, 782, 1204, 1305, 1479, 2268 |
| BsnI | GGCC | 7 cut(s) | 5, 487, 578, 1041, 1526, 1648, 1833 |
| Bso31I | GGTCTC | 3 cut(s) | 168, 1389, 1919 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1261, 1606 |
| Bsp143I | GATC | 5 cut(s) | 67, 369, 697, 1304, 2185 |
| BspANI | GGCC | 7 cut(s) | 5, 487, 578, 1041, 1526, 1648, 1833 |
| BspCNI | CTCAG | 6 cut(s) | 70, 1279, 1444, 1910, 1957, 2413 |
| BspFNI | CGCG | 2 cut(s) | 186, 434 |
| BspHI | TCATGA | 2 cut(s) | 1335, 1396 |
| BspMAI | CTGCAG | 2 cut(s) | 867, 1450 |
| BspMI | ACCTGC | 1 cut(s) | 1825 |
| BspPI | GGATC | 3 cut(s) | 62, 75, 692 |
| BspQI | GCTCTTC | 1 cut(s) | 602 |
| BspT107I | GGYRCC | 5 cut(s) | 77, 311, 362, 1507, 1736 |
| BspTNI | GGTCTC | 3 cut(s) | 168, 1389, 1919 |
| BsrBI | CCGCTC | 1 cut(s) | 2380 |
| BsrDI | GCAATG | 3 cut(s) | 875, 1509, 2142 |
| BsrFI | RCCGGY | 2 cut(s) | 74, 177 |
| BsrI | ACTGG | 5 cut(s) | 422, 666, 1780, 2203, 2236 |
| BssAI | RCCGGY | 2 cut(s) | 74, 177 |
| BssECI | CCNNGG | 7 cut(s) | 139, 294, 432, 910, 984, 1430, 1511 |
| BssMI | GATC | 5 cut(s) | 67, 369, 697, 1304, 2185 |
| BssNAI | GTATAC | 1 cut(s) | 223 |
| BssNI | GRCGYC | 1 cut(s) | 312 |
| BssSI | CACGAG | 1 cut(s) | 1388 |
| BssT1I | CCWWGG | 3 cut(s) | 294, 910, 1511 |
| Bst1107I | GTATAC | 1 cut(s) | 223 |
| Bst2BI | CACGAG | 1 cut(s) | 1388 |
| Bst2UI | CCWGG | 3 cut(s) | 194, 400, 1528 |
| Bst6I | CTCTTC | 5 cut(s) | 602, 831, 912, 1966, 2254 |
| BstACI | GRCGYC | 1 cut(s) | 312 |
| BstBAI | YACGTR | 1 cut(s) | 413 |
| BstC8I | GCNNGC | 7 cut(s) | 576, 643, 1353, 1557, 1716, 2177, 2394 |
| BstDEI | CTNAG | 7 cut(s) | 57, 1287, 1452, 1897, 1965, 2400, 2438 |
| BstDSI | CCRYGG | 2 cut(s) | 139, 432 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 293 |
| BstF5I | GGATG | 6 cut(s) | 597, 877, 994, 1209, 1255, 1315 |
| BstFNI | CGCG | 2 cut(s) | 186, 434 |
| BstH2I | RGCGCY | 1 cut(s) | 315 |
| BstHHI | GCGC | 3 cut(s) | 186, 314, 1176 |
| BstKTI | GATC | 5 cut(s) | 70, 372, 700, 1307, 2188 |
| BstMAI | GTCTC | 5 cut(s) | 168, 1389, 1766, 1875, 1919 |
| BstMBI | GATC | 5 cut(s) | 67, 369, 697, 1304, 2185 |
| BstMCI | CGRYCG | 3 cut(s) | 75, 172, 385 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 84, 360, 437, 727, 1556, 2071, 2210 |
| BstNI | CCWGG | 3 cut(s) | 194, 400, 1528 |
| BstNSI | RCATGY | 3 cut(s) | 1699, 1718, 2179 |
| BstSCI | CCNGG | 4 cut(s) | 192, 398, 512, 1526 |
| BstSFI | CTRYAG | 4 cut(s) | 863, 1446, 2205, 2216 |
| BstUI | CGCG | 2 cut(s) | 186, 434 |
| BstV1I | GCAGC | 7 cut(s) | 849, 877, 1157, 1460, 1686, 1702, 2102 |
| BstV2I | GAAGAC | 3 cut(s) | 252, 261, 1593 |
| BstX2I | RGATCY | 3 cut(s) | 67, 697, 1304 |
| BstYI | RGATCY | 3 cut(s) | 67, 697, 1304 |
| BstZ17I | GTATAC | 1 cut(s) | 223 |
| BsuRI | GGCC | 7 cut(s) | 5, 487, 578, 1041, 1526, 1648, 1833 |
| BtgI | CCRYGG | 2 cut(s) | 139, 432 |
| BtgZI | GCGATG | 1 cut(s) | 2250 |
| BtsCI | GGATG | 6 cut(s) | 597, 877, 994, 1209, 1255, 1315 |
| BtsI | GCAGTG | 3 cut(s) | 619, 1839, 2067 |
| BtsIMutI | CAGTG | 5 cut(s) | 619, 1839, 2031, 2067, 2109 |
| BveI | ACCTGC | 1 cut(s) | 1825 |
| Cac8I | GCNNGC | 7 cut(s) | 576, 643, 1353, 1557, 1716, 2177, 2394 |
| CciI | TCATGA | 2 cut(s) | 1335, 1396 |
| CfoI | GCGC | 3 cut(s) | 186, 314, 1176 |
| Cfr10I | RCCGGY | 2 cut(s) | 74, 177 |
| Cfr42I | CCGCGG | 1 cut(s) | 435 |
| CseI | GACGC | 1 cut(s) | 673 |
| Csp6I | GTAC | 7 cut(s) | 208, 712, 895, 943, 1779, 1848, 1907 |
| CviAII | CATG | 7 cut(s) | 1165, 1336, 1397, 1696, 1715, 1751, 2176 |
| CviQI | GTAC | 7 cut(s) | 208, 712, 895, 943, 1779, 1848, 1907 |
| DdeI | CTNAG | 7 cut(s) | 57, 1287, 1452, 1897, 1965, 2400, 2438 |
| DinI | GGCGCC | 1 cut(s) | 313 |
| DpnI | GATC | 5 cut(s) | 69, 371, 699, 1306, 2187 |
| DpnII | GATC | 5 cut(s) | 67, 369, 697, 1304, 2185 |
| Eam1104I | CTCTTC | 5 cut(s) | 602, 831, 912, 1966, 2254 |
| EarI | CTCTTC | 5 cut(s) | 602, 831, 912, 1966, 2254 |
| EciI | GGCGGA | 2 cut(s) | 455, 471 |
| Ecl136II | GAGCTC | 1 cut(s) | 1604 |
| Eco130I | CCWWGG | 3 cut(s) | 294, 910, 1511 |
| Eco147I | AGGCCT | 2 cut(s) | 578, 1648 |
| Eco24I | GRGCYC | 2 cut(s) | 1261, 1606 |
| Eco31I | GGTCTC | 3 cut(s) | 168, 1389, 1919 |
| Eco32I | GATATC | 1 cut(s) | 1341 |
| Eco47I | GGWCC | 8 cut(s) | 90, 393, 528, 1069, 1161, 1493, 1539, 2079 |
| Eco53kI | GAGCTC | 1 cut(s) | 1604 |
| Eco72I | CACGTG | 1 cut(s) | 413 |
| EcoICRI | GAGCTC | 1 cut(s) | 1604 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 293 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1039, 1539 |
| EcoRII | CCWGG | 3 cut(s) | 192, 398, 1526 |
| EcoRV | GATATC | 1 cut(s) | 1341 |
| EcoT14I | CCWWGG | 3 cut(s) | 294, 910, 1511 |
| EcoT38I | GRGCYC | 2 cut(s) | 1261, 1606 |
| EgeI | GGCGCC | 1 cut(s) | 313 |
| EheI | GGCGCC | 1 cut(s) | 313 |
| ErhI | CCWWGG | 3 cut(s) | 294, 910, 1511 |
| Esp3I | CGTCTC | 1 cut(s) | 1875 |
| FaeI | CATG | 7 cut(s) | 1168, 1339, 1400, 1699, 1718, 1754, 2179 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 909, 941, 2058, 2090 |
| FaqI | GGGAC | 6 cut(s) | 529, 782, 1204, 1305, 1479, 2268 |
| FatI | CATG | 7 cut(s) | 1164, 1335, 1396, 1695, 1714, 1750, 2175 |
| FauI | CCCGC | 1 cut(s) | 111 |
| FblI | GTMKAC | 2 cut(s) | 222, 662 |
| FokI | GGATG | 6 cut(s) | 604, 864, 1001, 1216, 1262, 1302 |
| FriOI | GRGCYC | 2 cut(s) | 1261, 1606 |
| FspBI | CTAG | 2 cut(s) | 765, 1652 |
| GlaI | GCGC | 3 cut(s) | 185, 313, 1175 |
| GsuI | CTGGAG | 2 cut(s) | 1194, 1557 |
| HaeII | RGCGCY | 1 cut(s) | 315 |
| HaeIII | GGCC | 7 cut(s) | 5, 487, 578, 1041, 1526, 1648, 1833 |
| HapII | CCGG | 7 cut(s) | 75, 88, 178, 513, 582, 677, 2047 |
| HgaI | GACGC | 1 cut(s) | 673 |
| HhaI | GCGC | 3 cut(s) | 186, 314, 1176 |
| Hin1I | GRCGYC | 1 cut(s) | 312 |
| Hin1II | CATG | 7 cut(s) | 1168, 1339, 1400, 1699, 1718, 1754, 2179 |
| Hin6I | GCGC | 3 cut(s) | 184, 312, 1174 |
| HinP1I | GCGC | 3 cut(s) | 184, 312, 1174 |
| HincII | GTYRAC | 2 cut(s) | 663, 1104 |
| HindII | GTYRAC | 2 cut(s) | 663, 1104 |
| HindIII | AAGCTT | 3 cut(s) | 2052, 2072, 2340 |
| HinfI | GANTC | 7 cut(s) | 152, 164, 260, 500, 1192, 1811, 2304 |
| HpaI | GTTAAC | 1 cut(s) | 1104 |
| HpaII | CCGG | 7 cut(s) | 75, 88, 178, 513, 582, 677, 2047 |
| HphI | GGTGA | 6 cut(s) | 461, 532, 679, 860, 1142, 1806 |
| Hpy166II | GTNNAC | 6 cut(s) | 139, 223, 663, 1072, 1104, 2296 |
| Hpy8I | GTNNAC | 6 cut(s) | 139, 223, 663, 1072, 1104, 2296 |
| HpyAV | CCTTC | 9 cut(s) | 16, 730, 821, 1030, 1516, 1650, 1718, 1845, 2291 |
| HpyCH4IV | ACGT | 3 cut(s) | 412, 473, 1181 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 84, 360, 437, 727, 1556, 2071, 2210 |
| HpyF3I | CTNAG | 7 cut(s) | 57, 1287, 1452, 1897, 1965, 2400, 2438 |
| HpySE526I | ACGT | 3 cut(s) | 412, 473, 1181 |
| Hsp92I | GRCGYC | 1 cut(s) | 312 |
| Hsp92II | CATG | 7 cut(s) | 1168, 1339, 1400, 1699, 1718, 1754, 2179 |
| HspAI | GCGC | 3 cut(s) | 184, 312, 1174 |
| KasI | GGCGCC | 1 cut(s) | 311 |
| KspAI | GTTAAC | 1 cut(s) | 1104 |
| KspI | CCGCGG | 1 cut(s) | 435 |
| Kzo9I | GATC | 5 cut(s) | 67, 369, 697, 1304, 2185 |
| LguI | GCTCTTC | 1 cut(s) | 602 |
| Lsp1109I | GCAGC | 7 cut(s) | 849, 877, 1157, 1460, 1686, 1702, 2102 |
| LweI | GCATC | 8 cut(s) | 451, 849, 979, 1324, 1350, 2200, 2227, 2265 |
| MaeI | CTAG | 2 cut(s) | 765, 1652 |
| MaeII | ACGT | 3 cut(s) | 412, 473, 1181 |
| MaeIII | GTNAC | 9 cut(s) | 408, 413, 449, 685, 979, 1130, 1434, 1666, 1918 |
| MalI | GATC | 5 cut(s) | 69, 371, 699, 1306, 2187 |
| MbiI | CCGCTC | 1 cut(s) | 2380 |
| MboI | GATC | 5 cut(s) | 67, 369, 697, 1304, 2185 |
| MfeI | CAATTG | 1 cut(s) | 1275 |
| MflI | RGATCY | 3 cut(s) | 67, 697, 1304 |
| MhlI | GDGCHC | 2 cut(s) | 1261, 1606 |
| Mly113I | GGCGCC | 1 cut(s) | 312 |
| MlyI | GAGTC | 5 cut(s) | 173, 254, 509, 1186, 2298 |
| MmeI | TCCRAC | 7 cut(s) | 95, 192, 725, 1882, 1984, 2149, 2342 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1218 |
| MseI | TTAA | 8 cut(s) | 26, 773, 798, 971, 1083, 1103, 1797, 2327 |
| MslI | CAYNNNNRTG | 1 cut(s) | 882 |
| MspA1I | CMGCKG | 4 cut(s) | 434, 534, 1451, 2093 |
| MspI | CCGG | 7 cut(s) | 75, 88, 178, 513, 582, 677, 2047 |
| MspR9I | CCNGG | 4 cut(s) | 194, 400, 514, 1528 |
| MunI | CAATTG | 1 cut(s) | 1275 |
| MvaI | CCWGG | 3 cut(s) | 194, 400, 1528 |
| MvnI | CGCG | 2 cut(s) | 186, 434 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 84, 360, 437, 727, 1556, 2071, 2210 |
| NarI | GGCGCC | 1 cut(s) | 312 |
| NciI | CCSGG | 1 cut(s) | 514 |
| NdeII | GATC | 5 cut(s) | 67, 369, 697, 1304, 2185 |
| NlaIII | CATG | 7 cut(s) | 1168, 1339, 1400, 1699, 1718, 1754, 2179 |
| NmeAIII | GCCGAG | 2 cut(s) | 452, 513 |
| NmuCI | GTSAC | 6 cut(s) | 408, 413, 449, 685, 1130, 1666 |
| NspI | RCATGY | 3 cut(s) | 1699, 1718, 2179 |
| PaeI | GCATGC | 2 cut(s) | 1718, 2179 |
| PagI | TCATGA | 2 cut(s) | 1335, 1396 |
| PaqCI | CACCTGC | 1 cut(s) | 1825 |
| PceI | AGGCCT | 2 cut(s) | 578, 1648 |
| PciI | ACATGT | 1 cut(s) | 1695 |
| PciSI | GCTCTTC | 1 cut(s) | 602 |
| PcsI | WCGNNNNNNNCGW | 9 cut(s) | 91, 141, 147, 216, 246, 249, 255, 339, 378 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1218 |
| PfeI | GAWTC | 2 cut(s) | 152, 1811 |
| Pfl23II | CGTACG | 1 cut(s) | 207 |
| PflFI | GACNNNGTC | 1 cut(s) | 1165 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2003 |
| PleI | GAGTC | 5 cut(s) | 172, 254, 508, 1186, 2298 |
| PluTI | GGCGCC | 1 cut(s) | 315 |
| PmaCI | CACGTG | 1 cut(s) | 413 |
| PmlI | CACGTG | 1 cut(s) | 413 |
| PpsI | GAGTC | 5 cut(s) | 172, 254, 508, 1186, 2298 |
| Ppu21I | YACGTR | 1 cut(s) | 413 |
| PpuMI | RGGWCCY | 1 cut(s) | 1539 |
| PscI | ACATGT | 1 cut(s) | 1695 |
| PsiI | TTATAA | 1 cut(s) | 759 |
| Psp124BI | GAGCTC | 1 cut(s) | 1606 |
| Psp5II | RGGWCCY | 1 cut(s) | 1539 |
| Psp6I | CCWGG | 3 cut(s) | 192, 398, 1526 |
| PspCI | CACGTG | 1 cut(s) | 413 |
| PspGI | CCWGG | 3 cut(s) | 192, 398, 1526 |
| PspLI | CGTACG | 1 cut(s) | 207 |
| PspPPI | RGGWCCY | 1 cut(s) | 1539 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1419, 1451 |
| PstI | CTGCAG | 2 cut(s) | 867, 1450 |
| PsuI | RGATCY | 3 cut(s) | 67, 697, 1304 |
| PsyI | GACNNNGTC | 1 cut(s) | 1165 |
| PvuII | CAGCTG | 2 cut(s) | 1451, 2093 |
| RsaI | GTAC | 7 cut(s) | 209, 713, 896, 944, 1780, 1849, 1908 |
| RsaNI | GTAC | 7 cut(s) | 208, 712, 895, 943, 1779, 1848, 1907 |
| RseI | CAYNNNNRTG | 1 cut(s) | 882 |
| SacI | GAGCTC | 1 cut(s) | 1606 |
| SacII | CCGCGG | 1 cut(s) | 435 |
| SalI | GTCGAC | 1 cut(s) | 661 |
| SapI | GCTCTTC | 1 cut(s) | 602 |
| SaqAI | TTAA | 8 cut(s) | 26, 773, 798, 971, 1083, 1103, 1797, 2327 |
| Sau3AI | GATC | 5 cut(s) | 67, 369, 697, 1304, 2185 |
| ScaI | AGTACT | 1 cut(s) | 944 |
| SchI | GAGTC | 5 cut(s) | 173, 254, 509, 1186, 2298 |
| ScrFI | CCNGG | 4 cut(s) | 194, 400, 514, 1528 |
| SduI | GDGCHC | 2 cut(s) | 1261, 1606 |
| SfaNI | GCATC | 8 cut(s) | 451, 849, 979, 1324, 1350, 2200, 2227, 2265 |
| SfcI | CTRYAG | 4 cut(s) | 863, 1446, 2205, 2216 |
| SfoI | GGCGCC | 1 cut(s) | 313 |
| Sfr303I | CCGCGG | 1 cut(s) | 435 |
| SgrBI | CCGCGG | 1 cut(s) | 435 |
| SinI | GGWCC | 8 cut(s) | 90, 393, 528, 1069, 1161, 1493, 1539, 2079 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 882 |
| SmlI | CTYRAG | 4 cut(s) | 816, 1346, 1364, 1975 |
| SmoI | CTYRAG | 4 cut(s) | 816, 1346, 1364, 1975 |
| SphI | GCATGC | 2 cut(s) | 1718, 2179 |
| SseBI | AGGCCT | 2 cut(s) | 578, 1648 |
| SspDI | GGCGCC | 1 cut(s) | 311 |
| SspI | AATATT | 1 cut(s) | 1096 |
| SspMI | CTAG | 2 cut(s) | 765, 1652 |
| SstI | GAGCTC | 1 cut(s) | 1606 |
| StuI | AGGCCT | 2 cut(s) | 578, 1648 |
| StyD4I | CCNGG | 4 cut(s) | 192, 398, 512, 1526 |
| StyI | CCWWGG | 3 cut(s) | 294, 910, 1511 |
| TaiI | ACGT | 3 cut(s) | 415, 476, 1184 |
| TaqI | TCGA | 6 cut(s) | 330, 470, 662, 855, 1476, 2452 |
| TaqII | GACCGA | 1 cut(s) | 186 |
| TatI | WGTACW | 1 cut(s) | 942 |
| TfiI | GAWTC | 2 cut(s) | 152, 1811 |
| Tru1I | TTAA | 8 cut(s) | 26, 773, 798, 971, 1083, 1103, 1797, 2327 |
| Tru9I | TTAA | 8 cut(s) | 26, 773, 798, 971, 1083, 1103, 1797, 2327 |
| TscAI | CASTG | 5 cut(s) | 619, 1846, 2031, 2067, 2109 |
| TseFI | GTSAC | 6 cut(s) | 408, 413, 449, 685, 1130, 1666 |
| TseI | GCWGC | 7 cut(s) | 862, 865, 1145, 1448, 1674, 1690, 2090 |
| Tsp45I | GTSAC | 6 cut(s) | 408, 413, 449, 685, 1130, 1666 |
| TspRI | CASTG | 5 cut(s) | 619, 1846, 2031, 2067, 2109 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1165 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2003 |
| VpaK11BI | GGWCC | 8 cut(s) | 90, 393, 528, 1069, 1161, 1493, 1539, 2079 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 293 |
| XapI | RAATTY | 2 cut(s) | 1469, 1791 |
| XceI | RCATGY | 3 cut(s) | 1699, 1718, 2179 |
| XmiI | GTMKAC | 2 cut(s) | 222, 662 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1218 |
| XspI | CTAG | 2 cut(s) | 765, 1652 |
| ZrmI | AGTACT | 1 cut(s) | 944 |