Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Forward (+)

55477346 .. 55478649

Gene Structure 1304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0384400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAGTCATGACACTGTAGAATTGGGGTTTGGTTTCGTACAAAGAGTTGTGTCGCTTGGTATCAACTACGGCCAACTCGGCGACAATTTGCTACAACCACAGCAAGTAATGAGCCTGTTAAGGTCCAACAATATCACAAAAACAAGAATTTACGACACCAATCCGCAGATACTAACTGCATTCGCAAATTCGGATATTGAGCTCATTGTGACAGTGGAAAACGAAATGCTAAGCCAATTAACCAACCCCCAAGCAGCCCTTCAATGGGTTACTACACACATCAAGCCTTATTTTCTCTCCACGAAAATCACAGGCATTATGATAGGGAACGAGATTGATGCAACGGATTTGCTAGCTAGCCTTGTACCGGCCATGTCCAGCATTCAAAAGGCCCTATCTCAGTTAGGCCTTGATTCACACATCAAGCTGTCATCGCCTTTTTCTTTTTCGGTGATGGAAGAGTCTTATCCACCTTCTGCTGGCAGTTTCAAAAGCGAGGTCTCGGGTGTGATGTCACAATTGTTACAGTTTTTGTCAAGCACAAAGGCGCCGTTTTTGGATCAATGCAGATCCTTACTTTGCGTGCAAGGGCAACTCGAAAGATATTCCTCTAGACTGATAGTAATGCCGAGGTTAGGGTCGCGGAGACAGGGTGGCAAATCAAAAGGGGATGCTGGTGGACTTGGTGCAAGTTTGGAGAATGCTGCTATATACAATGGGAACTTGTTGAAGAGGCAATTGGCCAAGGAAGGTACACCTTTGAAGCCTACGCTTGACGTCTATGTTTTTGCTCTTTTCAACAAGAACAAGAAACCTGGACCAACTTCGGAGAGGAATTTCGATCTGTTTCACCCTGATGGAACTGTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

290

Amino Acids

31.67

Weight (kDa)

8.45

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	19 - 189	4.6e-37	Glycosyl hydrolases family 17
Glyco_hydro_17	PF00332	225 - 288	1.5e-12	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	780
AccB1I	GGYRCC	1 cut(s)	547
AccII	CGCG	1 cut(s)	643
AciI	CCGC	2 cut(s)	164, 643
AclWI	GGATC	2 cut(s)	564, 567
AcoI	YGGCCR	3 cut(s)	70, 369, 741
AcsI	RAATTY	3 cut(s)	147, 187, 835
AcyI	GRCGYC	2 cut(s)	548, 777
AfaI	GTAC	3 cut(s)	39, 366, 754
AfiI	CCNNNNNNNGG	5 cut(s)	264, 265, 367, 479, 635
AgsI	TTSAA	6 cut(s)	263, 386, 490, 730, 763, 799
AjnI	CCWGG	1 cut(s)	814
AjuI	GAANNNNNNNTTGG	6 cut(s)	12, 44, 243, 275, 722, 754
AluBI	AGCT	3 cut(s)	202, 356, 427
AluI	AGCT	3 cut(s)	202, 356, 427
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	505, 640
AlwI	GGATC	2 cut(s)	564, 567
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	5 cut(s)	70, 369, 390, 406, 741
ApeKI	GCWGC	2 cut(s)	254, 704
ApoI	RAATTY	3 cut(s)	147, 187, 835
ArsI	GACNNNNNNTTYG	2 cut(s)	483, 515
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	3 cut(s)	123, 391, 818
AsuHPI	GGTGA	2 cut(s)	463, 842
AsuNHI	GCTAGC	2 cut(s)	352, 356
AvaI	CYCGRG	1 cut(s)	502
AvaII	GGWCC	2 cut(s)	123, 818
BalI	TGGCCA	1 cut(s)	743
BanI	GGYRCC	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	266, 691
BccI	CCATC	2 cut(s)	448, 851
BceAI	ACGGC	2 cut(s)	85, 535
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	1 cut(s)	816
BcoDI	GTCTC	2 cut(s)	505, 640
BfaI	CTAG	3 cut(s)	353, 357, 612
BfmI	CTRYAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	551
BglI	GCCNNNNNGGC	1 cut(s)	78
BisI	GCNGC	2 cut(s)	255, 705
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	2 cut(s)	256, 706
Bme1390I	CCNGG	1 cut(s)	816
Bme18I	GGWCC	2 cut(s)	123, 818
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	3 cut(s)	123, 391, 818
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	1 cut(s)	816
BmsI	GCATC	2 cut(s)	328, 661
BmtI	GCTAGC	2 cut(s)	356, 360
Bpu1102I	GCTNAGC	1 cut(s)	230
BsaHI	GRCGYC	2 cut(s)	548, 777
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	629, 744
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bsc4I	CCNNNNNNNGG	5 cut(s)	264, 265, 367, 479, 635
Bse118I	RCCGGY	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	816
BseDI	CCNNGG	2 cut(s)	629, 744
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	5 cut(s)	264, 265, 367, 479, 635
BseMII	CTCAG	1 cut(s)	413
BseXI	GCAGC	2 cut(s)	266, 691
Bsh1236I	CGCG	1 cut(s)	643
BshFI	GGCC	5 cut(s)	72, 371, 392, 408, 743
BshNI	GGYRCC	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	368
BslI	CCNNNNNNNGG	5 cut(s)	264, 265, 367, 479, 635
BsmAI	GTCTC	2 cut(s)	505, 640
BsmI	GAATGC	3 cut(s)	179, 381, 706
BsnI	GGCC	5 cut(s)	72, 371, 392, 408, 743
Bso31I	GGTCTC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	559, 569, 841
Bsp1720I	GCTNAGC	1 cut(s)	230
BspACI	CCGC	2 cut(s)	164, 643
BspANI	GGCC	5 cut(s)	72, 371, 392, 408, 743
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	643
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	549
BspOI	GCTAGC	2 cut(s)	356, 360
BspPI	GGATC	2 cut(s)	564, 567
BspT107I	GGYRCC	1 cut(s)	547
BspTNI	GGTCTC	1 cut(s)	505
BsrFI	RCCGGY	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	629, 744
BssMI	GATC	3 cut(s)	559, 569, 841
BssNI	GRCGYC	2 cut(s)	548, 777
BssT1I	CCWWGG	1 cut(s)	744
Bst2UI	CCWGG	1 cut(s)	816
Bst4CI	ACNGT	4 cut(s)	16, 214, 528, 865
Bst6I	CTCTTC	2 cut(s)	453, 725
BstACI	GRCGYC	2 cut(s)	548, 777
BstC8I	GCNNGC	4 cut(s)	354, 358, 481, 584
BstDEI	CTNAG	3 cut(s)	230, 399, 870
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	1 cut(s)	643
BstH2I	RGCGCY	1 cut(s)	551
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	3 cut(s)	562, 572, 844
BstMAI	GTCTC	2 cut(s)	505, 640
BstMBI	GATC	3 cut(s)	559, 569, 841
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 433
BstNI	CCWGG	1 cut(s)	816
BstSCI	CCNGG	1 cut(s)	814
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	643
BstV1I	GCAGC	2 cut(s)	266, 691
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BsuRI	GGCC	5 cut(s)	72, 371, 392, 408, 743
BtgZI	GCGATG	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	676
BtsIMutI	CAGTG	2 cut(s)	12, 219
Cac8I	GCNNGC	4 cut(s)	354, 358, 481, 584
CciI	TCATGA	1 cut(s)	7
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	3 cut(s)	123, 391, 818
Csp6I	GTAC	3 cut(s)	38, 365, 753
CviAII	CATG	2 cut(s)	8, 373
CviQI	GTAC	3 cut(s)	38, 365, 753
DdeI	CTNAG	3 cut(s)	230, 399, 870
DinI	GGCGCC	1 cut(s)	549
DpnI	GATC	3 cut(s)	561, 571, 843
DpnII	GATC	3 cut(s)	559, 569, 841
EaeI	YGGCCR	3 cut(s)	70, 369, 741
Eam1104I	CTCTTC	2 cut(s)	453, 725
EarI	CTCTTC	2 cut(s)	453, 725
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	744
Eco147I	AGGCCT	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	505
Eco47I	GGWCC	2 cut(s)	123, 818
Eco53kI	GAGCTC	1 cut(s)	202
Eco88I	CYCGRG	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	744
EcoT38I	GRGCYC	1 cut(s)	204
EgeI	GGCGCC	1 cut(s)	549
EheI	GGCGCC	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	2 cut(s)	11, 376
FaiI	YATR	6 cut(s)	9, 320, 374, 710, 712, 783
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FatI	CATG	2 cut(s)	7, 372
Fnu4HI	GCNGC	2 cut(s)	255, 705
FokI	GGATG	1 cut(s)	683
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	255, 705
FspBI	CTAG	3 cut(s)	353, 357, 612
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	2 cut(s)	255, 705
HaeII	RGCGCY	1 cut(s)	551
HaeIII	GGCC	5 cut(s)	72, 371, 392, 408, 743
HapII	CCGG	1 cut(s)	368
HhaI	GCGC	1 cut(s)	550
Hin1I	GRCGYC	2 cut(s)	548, 777
Hin1II	CATG	2 cut(s)	11, 376
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HinfI	GANTC	3 cut(s)	4, 413, 461
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	2 cut(s)	463, 842
Hpy166II	GTNNAC	2 cut(s)	680, 755
Hpy188I	TCNGA	2 cut(s)	193, 829
Hpy188III	TCNNGA	2 cut(s)	8, 612
Hpy8I	GTNNAC	2 cut(s)	680, 755
HpyAV	CCTTC	3 cut(s)	269, 483, 743
HpyCH4III	ACNGT	4 cut(s)	16, 214, 528, 865
HpyCH4IV	ACGT	1 cut(s)	777
HpyCH4V	TGCA	5 cut(s)	179, 341, 567, 586, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 433
HpyF3I	CTNAG	3 cut(s)	230, 399, 870
HpySE526I	ACGT	1 cut(s)	777
Hsp92I	GRCGYC	2 cut(s)	548, 777
Hsp92II	CATG	2 cut(s)	11, 376
HspAI	GCGC	1 cut(s)	548
KasI	GGCGCC	1 cut(s)	547
Kzo9I	GATC	3 cut(s)	559, 569, 841
Lsp1109I	GCAGC	2 cut(s)	266, 691
LweI	GCATC	2 cut(s)	328, 661
MaeI	CTAG	3 cut(s)	353, 357, 612
MaeII	ACGT	1 cut(s)	777
MaeIII	GTNAC	4 cut(s)	208, 268, 513, 522
MalI	GATC	3 cut(s)	561, 571, 843
MboI	GATC	3 cut(s)	559, 569, 841
MboII	GAAGA	2 cut(s)	470, 742
MfeI	CAATTG	2 cut(s)	518, 737
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	743
MluCI	AATT	8 cut(s)	20, 85, 147, 187, 236, 518, 737, 835
MluNI	TGGCCA	1 cut(s)	743
Mly113I	GGCGCC	1 cut(s)	548
MlyI	GAGTC	2 cut(s)	13, 470
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	490, 619, 624, 726, 825
Mox20I	TGGCCA	1 cut(s)	743
MscI	TGGCCA	1 cut(s)	743
MseI	TTAA	2 cut(s)	119, 239
MslI	CAYNNNNRTG	1 cut(s)	855
Msp20I	TGGCCA	1 cut(s)	743
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	816
MunI	CAATTG	2 cut(s)	518, 737
Mva1269I	GAATGC	3 cut(s)	179, 381, 706
MvaI	CCWGG	1 cut(s)	816
MvnI	CGCG	1 cut(s)	643
MwoI	GCNNNNNNNGC	2 cut(s)	78, 433
NarI	GGCGCC	1 cut(s)	548
NdeII	GATC	3 cut(s)	559, 569, 841
NheI	GCTAGC	2 cut(s)	352, 356
NlaIII	CATG	2 cut(s)	11, 376
NlaIV	GGNNCC	1 cut(s)	549
NmeAIII	GCCGAG	2 cut(s)	57, 654
NmuCI	GTSAC	2 cut(s)	208, 513
PagI	TCATGA	1 cut(s)	7
PceI	AGGCCT	1 cut(s)	408
PctI	GAATGC	3 cut(s)	179, 381, 706
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	256, 706
PleI	GAGTC	2 cut(s)	12, 469
PluTI	GGCGCC	1 cut(s)	551
PpsI	GAGTC	2 cut(s)	12, 469
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	814
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	3 cut(s)	123, 391, 818
PsuI	RGATCY	1 cut(s)	569
RsaI	GTAC	3 cut(s)	39, 366, 754
RsaNI	GTAC	3 cut(s)	38, 365, 753
RseI	CAYNNNNRTG	1 cut(s)	855
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	119, 239
SatI	GCNGC	2 cut(s)	255, 705
Sau3AI	GATC	3 cut(s)	559, 569, 841
Sau96I	GGNCC	3 cut(s)	123, 391, 818
SchI	GAGTC	2 cut(s)	13, 470
ScrFI	CCNGG	1 cut(s)	816
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	2 cut(s)	328, 661
SfcI	CTRYAG	1 cut(s)	15
SfoI	GGCGCC	1 cut(s)	549
SinI	GGWCC	2 cut(s)	123, 818
SmiMI	CAYNNNNRTG	1 cut(s)	855
Sse9I	AATT	8 cut(s)	20, 85, 147, 187, 236, 518, 737, 835
SseBI	AGGCCT	1 cut(s)	408
SsiI	CCGC	2 cut(s)	164, 643
SspDI	GGCGCC	1 cut(s)	547
SspMI	CTAG	3 cut(s)	353, 357, 612
SstI	GAGCTC	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	814
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	4 cut(s)	16, 214, 528, 865
TaiI	ACGT	1 cut(s)	780
TaqI	TCGA	2 cut(s)	597, 840
TasI	AATT	8 cut(s)	20, 85, 147, 187, 236, 518, 737, 835
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	119, 239
Tru9I	TTAA	2 cut(s)	119, 239
TscAI	CASTG	2 cut(s)	19, 219
TseFI	GTSAC	2 cut(s)	208, 513
TseI	GCWGC	2 cut(s)	254, 704
Tsp45I	GTSAC	2 cut(s)	208, 513
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	2 cut(s)	19, 219
VpaK11BI	GGWCC	2 cut(s)	123, 818
XapI	RAATTY	3 cut(s)	147, 187, 835
XbaI	TCTAGA	1 cut(s)	611
XspI	CTAG	3 cut(s)	353, 357, 612
ZraI	GACGTC	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.