Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Reverse (-)

47688402 .. 47691054

Gene Structure 2653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1361300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCCGCTGAAGGTGAAACTAGTTCAGAAAGTCTTGTTCTAAGTGGTATGCATGACCATTACGGAGGTGTCATCGTCCACATCAACGACAATGATCCCATGGATCCTGCCACCTTCCTTTCATTGCTTACCTCTTCTATTGCCCACTGGAAGCTTCAGGGGAAAAAGGGTGTTTGGATCAAGTTGCCTATAGAACGAGTCAATCTTGTTGAAGTTGCAGTCAAGGAAGGATTCTGGTACCATCATGCAGAGCCTATGTATTTGATGCTCGTGTATTGGATTCCCCAATCGCCTCACACCCTTCCTTCCAATGCCACCCACCGTGTCGGAATTGGCGCTTTCGTCCTCAACCCCAACACTAGACAGGTGCTAGCAGTCCAAGAAAAGAGCGGGGTTTTACAGGGGACAGGTGTGTGGAAGTTCCCTACTGGAGTTGTAGACGAGGGAGAAGATATCTGTGTAGCTGCTGTGAGAGAAGTCAAAGAAGAAACTGGAATTGACTCGGAGTTCGTCGAAGTTCTAGCATTCAGGCAAAGCCACAAGGCATTCTTTGAGAAGTCAGATTTATTTTTTGTGTGCATGATGCGACCCCTTTCCTATGACATCCAAACGCAGGAACATGAGATTGAAGCAGCCCAGTGGATACCATTTGATGAGTACGCAGCCCAACCGTTTGTCCAGAATAACGAGCTTCTGAAATACATCAGTGACATATGCAAAACAAAGATAGATGGGCAGTATTCAGGATTTTCTCCACTACTTGCATCAAGTTTTTATGACCAAAAGGCGAGCTACTTGTACTTGAATAATAGTAGTACGGCGCCCAAGAGAGACGGTGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

282

Amino Acids

31.51

Weight (kDa)

5.17

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	14 - 94	3.5e-30	Nudix hydrolase domain
NUDIX	PF00293	107 - 227	2.1e-24	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	2 cut(s)	237, 820
AccBSI	CCGCTC	1 cut(s)	390
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	2 cut(s)	6, 390
AclWI	GGATC	4 cut(s)	89, 98, 111, 185
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	30, 140
AcyI	GRCGYC	1 cut(s)	821
AfaI	GTAC	4 cut(s)	239, 659, 800, 817
AfiI	CCNNNNNNNGG	1 cut(s)	613
AgsI	TTSAA	3 cut(s)	212, 629, 805
AhlI	ACTAGT	1 cut(s)	20
AluBI	AGCT	4 cut(s)	154, 464, 691, 792
AluI	AGCT	4 cut(s)	154, 464, 691, 792
Alw26I	GTCTC	1 cut(s)	825
AlwI	GGATC	4 cut(s)	89, 98, 111, 185
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	464, 632, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
Asp718I	GGTACC	1 cut(s)	237
AspLEI	GCGC	2 cut(s)	338, 823
AsuHPI	GGTGA	1 cut(s)	26
AsuNHI	GCTAGC	1 cut(s)	370
BamHI	GGATCC	1 cut(s)	103
BanI	GGYRCC	2 cut(s)	237, 820
BauI	CACGAG	1 cut(s)	269
BbvI	GCAGC	3 cut(s)	451, 644, 674
BccI	CCATC	2 cut(s)	249, 725
BceAI	ACGGC	1 cut(s)	834
BciVI	GTATCC	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	825
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	4 cut(s)	21, 360, 371, 521
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	2 cut(s)	339, 824
BfuI	GTATCC	1 cut(s)	636
BisI	GCNGC	4 cut(s)	6, 465, 633, 663
BlsI	GCNGC	4 cut(s)	7, 466, 634, 664
BmiI	GGNNCC	3 cut(s)	105, 239, 822
BmrI	ACTGGG	1 cut(s)	631
BmsI	GCATC	3 cut(s)	255, 573, 773
BmtI	GCTAGC	1 cut(s)	374
BmuI	ACTGGG	1 cut(s)	631
BpmI	CTGGAG	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	821
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse1I	ACTGG	4 cut(s)	152, 433, 496, 637
Bse3DI	GCAATG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	603
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseMI	GCAATG	1 cut(s)	122
BseNI	ACTGG	4 cut(s)	152, 433, 496, 637
BseXI	GCAGC	3 cut(s)	451, 644, 674
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	237, 820
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	613
BsmAI	GTCTC	1 cut(s)	825
BsmBI	CGTCTC	1 cut(s)	825
BsmFI	GGGAC	1 cut(s)	418
BsmI	GAATGC	2 cut(s)	524, 545
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	94, 103, 177
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	2 cut(s)	6, 390
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	3 cut(s)	105, 239, 822
BspOI	GCTAGC	1 cut(s)	374
BspPI	GGATC	4 cut(s)	89, 98, 111, 185
BspT107I	GGYRCC	2 cut(s)	237, 820
BsrBI	CCGCTC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	4 cut(s)	152, 433, 496, 637
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	94, 103, 177
BssNI	GRCGYC	1 cut(s)	821
BssSI	CACGAG	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	269
Bst4CI	ACNGT	3 cut(s)	323, 672, 836
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	821
BstC8I	GCNNGC	2 cut(s)	372, 790
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	603
BstH2I	RGCGCY	2 cut(s)	339, 824
BstHHI	GCGC	2 cut(s)	338, 823
BstKTI	GATC	3 cut(s)	97, 106, 180
BstMAI	GTCTC	1 cut(s)	825
BstMBI	GATC	3 cut(s)	94, 103, 177
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	451, 644, 674
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	636
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	603
BtsIMutI	CAGTG	3 cut(s)	145, 644, 712
Cac8I	GCNNGC	2 cut(s)	372, 790
CfoI	GCGC	2 cut(s)	338, 823
Csp6I	GTAC	4 cut(s)	238, 658, 799, 816
CviAII	CATG	5 cut(s)	53, 100, 245, 580, 620
CviJI	RGCY	9 cut(s)	5, 154, 253, 464, 537, 635, 665, 691, 792
CviKI_1	RGCY	9 cut(s)	5, 154, 253, 464, 537, 635, 665, 691, 792
CviQI	GTAC	4 cut(s)	238, 658, 799, 816
DdeI	CTNAG	1 cut(s)	41
DinI	GGCGCC	1 cut(s)	822
DpnI	GATC	3 cut(s)	96, 105, 179
DpnII	GATC	3 cut(s)	94, 103, 177
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	30, 140
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	99
EcoT22I	ATGCAT	1 cut(s)	54
EgeI	GGCGCC	1 cut(s)	822
EheI	GGCGCC	1 cut(s)	822
ErhI	CCWWGG	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	825
FaeI	CATG	5 cut(s)	56, 103, 248, 583, 623
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	5 cut(s)	52, 99, 244, 579, 619
FauI	CCCGC	1 cut(s)	383
FauNDI	CATATG	1 cut(s)	713
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	4 cut(s)	6, 465, 633, 663
FokI	GGATG	1 cut(s)	590
Fsp4HI	GCNGC	4 cut(s)	6, 465, 633, 663
FspBI	CTAG	4 cut(s)	21, 360, 371, 521
GlaI	GCGC	2 cut(s)	337, 822
GluI	GCNGC	4 cut(s)	6, 465, 633, 663
GsuI	CTGGAG	1 cut(s)	450
HaeII	RGCGCY	2 cut(s)	339, 824
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	2 cut(s)	338, 823
Hin1I	GRCGYC	1 cut(s)	821
Hin1II	CATG	5 cut(s)	56, 103, 248, 583, 623
Hin6I	GCGC	2 cut(s)	336, 821
HinP1I	GCGC	2 cut(s)	336, 821
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	4 cut(s)	198, 231, 280, 500
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	79, 439
Hpy188I	TCNGA	5 cut(s)	28, 329, 505, 562, 696
Hpy188III	TCNNGA	2 cut(s)	679, 744
Hpy8I	GTNNAC	2 cut(s)	79, 439
Hpy99I	CGWCG	1 cut(s)	515
HpyAV	CCTTC	5 cut(s)	5, 124, 221, 311, 315
HpyCH4III	ACNGT	3 cut(s)	323, 672, 836
HpyCH4V	TGCA	6 cut(s)	52, 218, 248, 579, 717, 764
HpyF3I	CTNAG	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	821
Hsp92II	CATG	5 cut(s)	56, 103, 248, 583, 623
HspAI	GCGC	2 cut(s)	336, 821
KasI	GGCGCC	1 cut(s)	820
KpnI	GGTACC	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	94, 103, 177
Lsp1109I	GCAGC	3 cut(s)	451, 644, 674
LweI	GCATC	3 cut(s)	255, 573, 773
MaeI	CTAG	4 cut(s)	21, 360, 371, 521
MaeIII	GTNAC	1 cut(s)	707
MalI	GATC	3 cut(s)	96, 105, 179
MbiI	CCGCTC	1 cut(s)	390
MboI	GATC	3 cut(s)	94, 103, 177
MboII	GAAGA	3 cut(s)	126, 461, 497
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	2 cut(s)	330, 495
Mly113I	GGCGCC	1 cut(s)	821
MlyI	GAGTC	2 cut(s)	207, 494
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	5 cut(s)	59, 142, 303, 356, 436
Mph1103I	ATGCAT	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	8
Mva1269I	GAATGC	2 cut(s)	524, 545
NarI	GGCGCC	1 cut(s)	821
NcoI	CCATGG	1 cut(s)	99
NdeI	CATATG	1 cut(s)	713
NdeII	GATC	3 cut(s)	94, 103, 177
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	5 cut(s)	56, 103, 248, 583, 623
NlaIV	GGNNCC	3 cut(s)	105, 239, 822
NmuCI	GTSAC	1 cut(s)	707
NsiI	ATGCAT	1 cut(s)	54
PctI	GAATGC	2 cut(s)	524, 545
PfeI	GAWTC	2 cut(s)	231, 280
PkrI	GCNGC	4 cut(s)	7, 466, 634, 664
PleI	GAGTC	2 cut(s)	206, 494
PluTI	GGCGCC	1 cut(s)	824
PpsI	GAGTC	2 cut(s)	206, 494
PspN4I	GGNNCC	3 cut(s)	105, 239, 822
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	4 cut(s)	239, 659, 800, 817
RsaNI	GTAC	4 cut(s)	238, 658, 799, 816
SatI	GCNGC	4 cut(s)	6, 465, 633, 663
Sau3AI	GATC	3 cut(s)	94, 103, 177
SchI	GAGTC	2 cut(s)	207, 494
SfaNI	GCATC	3 cut(s)	255, 573, 773
SfcI	CTRYAG	1 cut(s)	189
SfoI	GGCGCC	1 cut(s)	822
SpeI	ACTAGT	1 cut(s)	20
Sse9I	AATT	2 cut(s)	330, 495
SsiI	CCGC	2 cut(s)	6, 390
SspDI	GGCGCC	1 cut(s)	820
SspMI	CTAG	4 cut(s)	21, 360, 371, 521
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	323, 672, 836
TaqI	TCGA	1 cut(s)	513
TasI	AATT	2 cut(s)	330, 495
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	231, 280
TscAI	CASTG	3 cut(s)	152, 644, 712
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	3 cut(s)	464, 632, 662
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	1 cut(s)	111
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	3 cut(s)	152, 644, 712
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	4 cut(s)	21, 360, 371, 521
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.