Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Reverse (-)

41476099 .. 41479011

Gene Structure 2913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1338700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCCACGTGCGTGCCCATTCCTCTGTTCCTTTTTAATTTTTGGTCAACAACGGCTACCGACGCCTCTCCTAACTAACATTGGTCAGCCCTGTGCTCCTCGTGGATCGTCATCAATGGCTGCCAAAACTGAAAGTGGTGGTGGTGGTGGAAGGGAGATGAAGAAGGTGCTTAATGCAGTGAATGATCATTACGGAGGTGTGATCGTCCACGTCACTGAGCCCATGGAGCCTGCCACCTTCGTATCCTCTCTTACATCTTCAATTGCGCATTGGAAGCTGCAGGGAAAGAATGGTATTTGGATCAAAATGCCAATAGAGCGAGTCAATCTTGTTGAAGCTGCGGTCAAGGAAGGATTCTGGTACCACCATGCAGAGCCTGATTATTTGATGCTTGTGTATTGGATTCCTCAGTCCCCTCATACTCTTCCCACAAATGCAACACACCGTGTAGGAATTGGTGCCTTTCTTATCAATCAAAACAGAGAGGTGCTAGTAGTCCAAGAAAAGGGTGGACAATATCGTGGGACAGGTCTGTGGAAGCTCCCTACTGGAGCCGTTGATGAGGGAGAAGATATTTTTGCAGCTGCTGTCCGAGAAGTGAAGGAAGAAACAGGAATTGACTCGGAGTTTGTGGAAGTTCTTGCATTCAGAGAGAGTCACAAGTCATTCTTTGAGAAGTCAGATTTATTCTTTTTGTGCATGCTACGGCCCCTCTCTTTTGACATCCAGAAGCAGGAACAAGAGATAGAAGCAGCCAAGTGGATGCCATATGAGGAATATGCAGCACAACCATTTGTCCAAAAGTACGAGCTTCTAAAGTACATGCATGACATATGCAAAGCGAAGATAGATGGCAAGTATTCGGGATTCTCTCCTCTACCCAGTAGAAGTTATTCTCTTCACAAGAGCTACTTGTACTTGAATAGCAGTAAGGCACCCAAGAGAAGGAGTAAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

320

Amino Acids

35.98

Weight (kDa)

8.45

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	57 - 135	3.9e-30	Nudix hydrolase domain
NUDIX	PF00293	148 - 265	7.2e-26	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	267
Acc65I	GGTACC	1 cut(s)	360
AccB1I	GGYRCC	3 cut(s)	360, 458, 934
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	2 cut(s)	112, 308
AcvI	CACGTG	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	62
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	4 cut(s)	362, 806, 821, 917
AfiI	CCNNNNNNNGG	3 cut(s)	505, 733, 945
AgsI	TTSAA	3 cut(s)	261, 335, 922
AjiI	CACGTC	1 cut(s)	211
AleI	CACNNNNGTG	1 cut(s)	10
AluBI	AGCT	6 cut(s)	277, 338, 541, 584, 811, 909
AluI	AGCT	6 cut(s)	277, 338, 541, 584, 811, 909
Alw21I	GWGCWC	1 cut(s)	97
AlwI	GGATC	2 cut(s)	112, 308
AlwNI	CAGNNNCTG	2 cut(s)	377, 587
AoxI	GGCC	1 cut(s)	707
ApeKI	GCWGC	7 cut(s)	119, 277, 338, 581, 584, 752, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	611, 643
Asp700I	GAANNNNTTC	1 cut(s)	892
Asp718I	GGTACC	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	708
BaeGI	GKGCMC	1 cut(s)	17
BaeI	ACNNNNGTAYC	2 cut(s)	225, 258
BanI	GGYRCC	3 cut(s)	360, 458, 934
BanII	GRGCYC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	99
BbrPI	CACGTG	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	7 cut(s)	106, 264, 325, 571, 593, 764, 794
BccI	CCATC	1 cut(s)	845
BceAI	ACGGC	3 cut(s)	68, 539, 722
BciVI	GTATCC	1 cut(s)	253
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	253
BisI	GCNGC	7 cut(s)	120, 278, 339, 582, 585, 753, 783
BlsI	GCNGC	7 cut(s)	121, 279, 340, 583, 586, 754, 784
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	708
BmiI	GGNNCC	6 cut(s)	228, 362, 460, 553, 710, 936
BmrI	ACTGGG	1 cut(s)	876
BmsI	GCATC	2 cut(s)	378, 753
BmuI	ACTGGG	1 cut(s)	876
BpmI	CTGGAG	1 cut(s)	570
BsaAI	YACGTR	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	3 cut(s)	505, 733, 945
Bse1I	ACTGG	2 cut(s)	553, 882
Bse8I	GATNNNNATC	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	723, 768
BseJI	GATNNNNATC	1 cut(s)	109
BseLI	CCNNNNNNNGG	3 cut(s)	505, 733, 945
BseMII	CTCAG	2 cut(s)	207, 422
BseNI	ACTGG	2 cut(s)	553, 882
BseRI	GAGGAG	2 cut(s)	87, 864
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	7 cut(s)	106, 264, 325, 571, 593, 764, 794
BshFI	GGCC	1 cut(s)	709
BshNI	GGYRCC	3 cut(s)	360, 458, 934
BsiHKAI	GWGCWC	1 cut(s)	97
BslFI	GGGAC	2 cut(s)	397, 538
BslI	CCNNNNNNNGG	3 cut(s)	505, 733, 945
BsmFI	GGGAC	2 cut(s)	397, 538
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	1 cut(s)	709
Bsp1286I	GDGCHC	3 cut(s)	17, 97, 222
Bsp143I	GATC	4 cut(s)	104, 184, 201, 300
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	709
BspCNI	CTCAG	2 cut(s)	208, 421
BspLI	GGNNCC	6 cut(s)	228, 362, 460, 553, 710, 936
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	2 cut(s)	112, 308
BspT107I	GGYRCC	3 cut(s)	360, 458, 934
BsrI	ACTGG	2 cut(s)	553, 882
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	4 cut(s)	104, 184, 201, 300
BssNI	GRCGYC	1 cut(s)	62
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	446, 957
Bst6I	CTCTTC	2 cut(s)	429, 903
BstACI	GRCGYC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	13, 231, 701
BstDEI	CTNAG	2 cut(s)	216, 408
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	723, 768
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	4 cut(s)	107, 187, 204, 303
BstMBI	GATC	4 cut(s)	104, 184, 201, 300
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 226, 274, 316
BstNSI	RCATGY	2 cut(s)	703, 826
BstSFI	CTRYAG	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	7 cut(s)	106, 264, 325, 571, 593, 764, 794
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	709
BtgI	CCRYGG	1 cut(s)	222
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	723, 768
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	183, 213
Cac8I	GCNNGC	3 cut(s)	13, 231, 701
CaiI	CAGNNNCTG	2 cut(s)	377, 587
CfoI	GCGC	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	708
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	4 cut(s)	361, 805, 820, 916
CviAII	CATG	5 cut(s)	223, 368, 700, 823, 827
CviQI	GTAC	4 cut(s)	361, 805, 820, 916
DdeI	CTNAG	2 cut(s)	216, 408
DpnI	GATC	4 cut(s)	106, 186, 203, 302
DpnII	GATC	4 cut(s)	104, 184, 201, 300
DraIII	CACNNNGTG	1 cut(s)	446
Eam1104I	CTCTTC	2 cut(s)	429, 903
EarI	CTCTTC	2 cut(s)	429, 903
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	222
Eco72I	CACGTG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	828
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	5 cut(s)	226, 371, 703, 826, 830
FalI	AAGNNNNNCTT	4 cut(s)	653, 685, 896, 928
FaqI	GGGAC	2 cut(s)	397, 538
FatI	CATG	5 cut(s)	222, 367, 699, 822, 826
FauNDI	CATATG	2 cut(s)	769, 833
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	7 cut(s)	120, 278, 339, 582, 585, 753, 783
FokI	GGATG	2 cut(s)	710, 775
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	7 cut(s)	120, 278, 339, 582, 585, 753, 783
FspBI	CTAG	1 cut(s)	491
FspI	TGCGCA	1 cut(s)	267
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	7 cut(s)	120, 278, 339, 582, 585, 753, 783
GsuI	CTGGAG	1 cut(s)	570
HaeIII	GGCC	1 cut(s)	709
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	268
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	5 cut(s)	226, 371, 703, 826, 830
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	47
HindII	GTYRAC	1 cut(s)	47
HinfI	GANTC	6 cut(s)	321, 354, 403, 620, 655, 867
Hpy166II	GTNNAC	4 cut(s)	47, 208, 512, 953
Hpy188I	TCNGA	4 cut(s)	593, 625, 650, 682
Hpy188III	TCNNGA	2 cut(s)	727, 864
Hpy8I	GTNNAC	4 cut(s)	47, 208, 512, 953
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	6 cut(s)	144, 157, 247, 344, 595, 939
HpyCH4III	ACNGT	2 cut(s)	446, 957
HpyCH4IV	ACGT	2 cut(s)	7, 210
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 226, 274, 316
HpyF3I	CTNAG	2 cut(s)	216, 408
HpySE526I	ACGT	2 cut(s)	7, 210
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	5 cut(s)	226, 371, 703, 826, 830
HspAI	GCGC	1 cut(s)	266
KpnI	GGTACC	1 cut(s)	364
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	104, 184, 201, 300
LmnI	GCTCC	4 cut(s)	100, 226, 546, 551
Lsp1109I	GCAGC	7 cut(s)	106, 264, 325, 571, 593, 764, 794
LweI	GCATC	2 cut(s)	378, 753
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	2 cut(s)	7, 210
MaeIII	GTNAC	2 cut(s)	211, 656
MalI	GATC	4 cut(s)	106, 186, 203, 302
MboI	GATC	4 cut(s)	104, 184, 201, 300
MboII	GAAGA	7 cut(s)	172, 249, 416, 581, 617, 856, 890
MfeI	CAATTG	1 cut(s)	261
MhlI	GDGCHC	3 cut(s)	17, 97, 222
MluCI	AATT	4 cut(s)	36, 261, 453, 615
MlyI	GAGTC	3 cut(s)	330, 614, 664
Mph1103I	ATGCAT	1 cut(s)	828
MroXI	GAANNNNTTC	1 cut(s)	892
MseI	TTAA	2 cut(s)	35, 171
MslI	CAYNNNNRTG	1 cut(s)	10
MspA1I	CMGCKG	1 cut(s)	584
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	644
MwoI	GCNNNNNNNGC	4 cut(s)	61, 226, 274, 316
NcoI	CCATGG	1 cut(s)	222
NdeI	CATATG	2 cut(s)	769, 833
NdeII	GATC	4 cut(s)	104, 184, 201, 300
NlaIII	CATG	5 cut(s)	226, 371, 703, 826, 830
NlaIV	GGNNCC	6 cut(s)	228, 362, 460, 553, 710, 936
NmuCI	GTSAC	2 cut(s)	211, 656
NsbI	TGCGCA	1 cut(s)	267
NsiI	ATGCAT	1 cut(s)	828
NspI	RCATGY	2 cut(s)	703, 826
OliI	CACNNNNGTG	1 cut(s)	10
PaeI	GCATGC	1 cut(s)	703
PctI	GAATGC	1 cut(s)	644
PdmI	GAANNNNTTC	1 cut(s)	892
PfeI	GAWTC	3 cut(s)	354, 403, 867
PkrI	GCNGC	7 cut(s)	121, 279, 340, 583, 586, 754, 784
PleI	GAGTC	3 cut(s)	329, 614, 663
PmaCI	CACGTG	1 cut(s)	8
PmlI	CACGTG	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	329, 614, 663
Ppu21I	YACGTR	1 cut(s)	8
PspCI	CACGTG	1 cut(s)	8
PspN4I	GGNNCC	6 cut(s)	228, 362, 460, 553, 710, 936
PspPI	GGNCC	1 cut(s)	708
PstI	CTGCAG	1 cut(s)	282
PstNI	CAGNNNCTG	2 cut(s)	377, 587
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	4 cut(s)	362, 806, 821, 917
RsaNI	GTAC	4 cut(s)	361, 805, 820, 916
RseI	CAYNNNNRTG	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	35, 171
SatI	GCNGC	7 cut(s)	120, 278, 339, 582, 585, 753, 783
Sau3AI	GATC	4 cut(s)	104, 184, 201, 300
Sau96I	GGNCC	1 cut(s)	708
SchI	GAGTC	3 cut(s)	330, 614, 664
SduI	GDGCHC	3 cut(s)	17, 97, 222
SfaNI	GCATC	2 cut(s)	378, 753
SfcI	CTRYAG	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	10
SphI	GCATGC	1 cut(s)	703
Sse9I	AATT	4 cut(s)	36, 261, 453, 615
SsiI	CCGC	1 cut(s)	341
SspMI	CTAG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	446, 957
TaiI	ACGT	2 cut(s)	10, 213
TasI	AATT	4 cut(s)	36, 261, 453, 615
TatI	WGTACW	2 cut(s)	819, 915
TfiI	GAWTC	3 cut(s)	354, 403, 867
Tru1I	TTAA	2 cut(s)	35, 171
Tru9I	TTAA	2 cut(s)	35, 171
TscAI	CASTG	2 cut(s)	183, 220
TseFI	GTSAC	2 cut(s)	211, 656
TseI	GCWGC	7 cut(s)	119, 277, 338, 581, 584, 752, 782
Tsp45I	GTSAC	2 cut(s)	211, 656
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	2 cut(s)	183, 220
XceI	RCATGY	2 cut(s)	703, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	892
XspI	CTAG	1 cut(s)	491
Zsp2I	ATGCAT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.